TCONS_00047343 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047343
Unique NameTCONS_00047343
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1459

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047343 ID=TCONS_00047343|Name=TCONS_00047343|organism=Clytia hemisphaerica|type=transcript|length=1459bp
AATACATAAGGCAAtggcatttttcaaaataaataaagcaACTGTAgaac
tagaaaaagagataaagCACTGTGAATTGAAAGATTTGTCGATCGATTTC
ACCCAAAAGGTTGGAGAGGGTGCTTATGCATCAGTATATAAGCACAATAT
AAGGAACAGTGATGCTGctatcaaattattcaaaaaacctATATCATTAA
AAAAACTCTTGGTTACCTCTGTAAAGATGAACAAATTAACTCATGAAAAT
GTTGTTAGATTTCTCGCATATTCCGTCAAGCCCTCTGCTATAGTATTTGA
ATTGTGTGAAGTTAAAGCCTCCGACGACACACTCGTCCACAATGTAGCAG
AGTTAATTGATttatttaatgaaaatgaaTATTTCAACCTAAAGGAAAGG
CTAGACATCGTCTTACAATCCGCTAAAGGGCTTAGCTACCTTCACAATAA
TTCGATCATCCACAAGGATTTTAAACCAAATAATTGTTTAGTTACTGGTG
ATCTAGACAATATCAAAGTTAAAGTGGCCGATTTCGACGATATTTTTGAT
ATCAAAAATACAGTAACATCAACTCTGACAAGTAATTGTAACCAAAAGAA
ACAAGGAATAACTCTAGCATATTCGGCGCCAGATTTATTATTGGAAAATA
AAACTCCGTCAGTGGAAAGTGATGTTTACTCCTTTGCTATATCAACCTAT
GCAATCCTTGGAAATGTTGATGGGATGCCTTGGTAATGCATACACTAAAG
AGCGGAAAACGACCACTCGTTGATACCCTGCATAATGTTTATAAAGACTC
TGAGTTGGTGAATGAAGTTGCTGATATGGTTAAACAAGCTTGGAATGATC
AAATCAATACACGCCCCACTATGCAAAAGaaatCAATTGAAGTAATCGAA
ACAATTGATGATAAAGCACCTACAACTACGGTAGTTGTAACAGAGCCCCC
TGTGAGGCCGAAGAGAGAAAAGAGAGAAGAGGTTGACAAATTGAATAAAT
TGAAGGCCTTAGAATACATTACGAAAGAAGAAGACCCTGAATATATCGAA
AAGTTGTTTATAGGTCATTCAATAGGTTTTGGTGTGTTTGCCAAAAGAAA
CATCAAAAAGGGGGAATTTGTAGCCTCCTATGAAGGAGAAAGAATCACTC
ATGCTGAAGGCTCAAAGCGACTACAAGAAGATACCGATCGAAGCTACTTG
TACTTTGTAGCgcacaaaagagaaaaattttgCATTGATGCATCAAAAGT
CGACAGACTCGGACGTTACATCAACGATTCCAAGAACCATAATTGTGTGG
TTAAGACCATTGAAAACAGCAGCGGAGTTCTATGTGTAGCAATATTTGCC
GCAAGTGATATAGCCGAGGGAAGGGAGTTTCGATATGACTACAATGATTG
TAACTTATTCTGGAGAAAGCAGGTATTTGAGGCATTGCTACTAAATTAAG
Ttgattttt
Run BLAST on NCBI

transcript from alignment at scaffold_126:45837..48975-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047343 ID=TCONS_00047343|Name=TCONS_00047343|organism=Clytia hemisphaerica|type=transcript|length=3139bp|location=Sequence derived from alignment at scaffold_126:45837..48975- (Clytia hemisphaerica)
AATACATAAGGCAATGGCATTTTTCAAAATAAATAAAGCAACTGTAGAAC
TAGAAAAAGAGATAAAGCACTGTGAATTGAAAGATTTGTCGATCGATTTC
ACCCAAAAGGTTGGAGAGGGTGCTTATGCATCAGTATATAAGCACAATAT
AAGGAACAGTGATGCTGCTATCAAATTATTCAAAAAACCTATATCATTAA
AAAAACTCTTGGTTACCTCTGTAAAGATGAACAAATTAACTCATGAAAAT
GTTGTTAGATTTCTCGCATATTCCGTCAAGCCCTCTGCTATAGTATTTGA
ATTGTGTGAAGTTAAAGCCTCCGACGACACACTCGTCCACAATGTAGCAG
AGTTAATTGATTTATTTAATGAAAATGAATATTTCAACCTAAAGGAAAGG
CTAGACATCGTCTTACAATCCGCTAAAGGGCTTAGCTACCTTCACAATAA
TTCGATCATCCACAAGGATTTTAAACCAAATAATTGTTTAGTTACTGGTG
ATCTAGACAATATCAAAGTTAAAGTGGCCGATTTCGACGATATTTTTGAT
ATCAAAAATACAGTAACATCAACTCTGACAAGTAATTGTAACCAAAAGAA
ACAAGGAATAACTCTAGCATATTCGGCGCCAGATTTATTATTGGAAAATA
AAACTCCGTCAGTGGAAAGTGATGTTTACTCCTTTGCTATATCAACCTAT
GCAATCCTTGGAAATGTTGATGGGATGCCTTGGTAATGCATACACTAAAG
AGCGGAAAACGACCACTCGTTGATACCCTGCATAATGTTTATAAAGACTC
TGAGTTGGTGAATGAAGTTGCTGATATGGTTAAACAAGCTTGGAATGATC
AAATCAATACACGCCCCACTATGCAAAAGGTGATATTGGATTATTTTATA
AAAGAATGTGTGCGATTTTGATATACCTTTTCTAACATTGCTTTTGTTTT
GTTTGCTATAACTTTTTCCATACAAGCTATCCATCAATGATGATTTTTTT
TAAACTTTAGGTGGTCAGTTCTTTGGAAGAAATTATAAGAAAGGTATCCC
AAACTAATTTCTTTTTAATTCTACTAATTTTGGTAACAAAGTCGCACTAT
ACTCGGATTTTTTACCTATCTATCGTTTATCTAGTGCATCCATAAAAATG
CGGTACCTTAATAAGGTAACATTCAAGCTTGTAGACATTGCTTTCTACTC
AAAATGTTCCGCTTTTGTGTGGGCGCAGTGGCAATCAGTGCTATAACAAA
GTTAAAAAATGAAGGCTTCCTCGGAGTTTTCTTTCTTTCTCCTAACTTTT
TTGTAAGTAAGATTCCACTTCATTGTTATGTCTTAATTGATCTGAATTCT
ATTAAAAAAGTAGATAACATCTTTTTCAGTAGGCTTTTATTACCAGTGCA
ATGAAAAATTTATACCTTTTTTGGCATTTTTTTTCATAGAAATCAATTGA
AGTAATCGAAACAATTGATGATAAAGCACCTACAACTACGGTAGTTGTAA
CAGAGCCCCCTGTAAGATTTTTTTGTAAATTTTACAAATTCTTATAAATT
AATATTAGACCGATGAGTTTTATTAGCCATTCTCTCAACAATAAGATAAG
GGTTCGAAAAAAATCATAAAATATTATAAAACATATCATAAAACATTCAA
GTCCTCTTCTCTTCCGTGGACGGAGTGGAAGCTTCCAATCTACTGTATGT
TTGTTACTGTCTGTTGTAATTTTTATACATTATTTATTGTTTCATTTTAC
TAGGTGAGGCCGAAGAGAGAAAAGAGAGAAGAGGTTGACAAATTGAATAA
ATTGAAGGCCTTAGAATACATTACGAAAGAAGAAGACCCTGAATATATCG
AAAAGTTGTTTATAGGTCATTCAATAGGTAATAAGTACCGTTGGTTTGTT
TAATGTTTTGCGCTGTTTACATTATTTTTAGTTTTTAGCATAATGGATTG
AAAAGTATTACTTATTAATGATTTTTATTAACGGTTTTTAAAAAGGATAC
CGAGATGAATGGACCTAACTACCGGAATTGACTTATTTTCAAAGAGATCA
TATACGAATTAGATTGATTTTTTTCCAGGTTTTGGTGTGTTTGCCAAAAG
AAACATCAAAAAGGGGGAATTTGTAGCCTCCTATGAAGGAGAAAGAATCA
CTCATGCTGAAGGCTCAAAGCGACTACAAGAAGATACCGATCGAAGCTAC
TTGTACTTTGTAGCGCACAAAAGAGAAAAATTTTGGTAAAGGTTTCTAAA
GTATATCCCAAAACAAAAAGAATTGGCAGTTGACACATTTTGCTTTCCTG
CTCCTAAAAATATAAAATGTTACGAAGATAAGTGATGCCTCCTTGGAAAG
ATAATTAAAAGTGGGTAGTTATTAAAAATTAAAATTTGTCAAAAAGTTTG
AAAATGTAGTGAAACAAACAGATTTTTGTCTAGCAATCCTAAGAACTTGA
AATTTAGTAGAAAAAATATTTCAATGGAGCTGATCAGTATACATTACTTT
CCTTGAATGTTATAGAGGTAGAGGGATCAAAAAGTTCAAAATCGGATTGA
AATTGGGGAAAAATCGGGAACCTAGGCCTACTTTGAGGAGATATTTCGAT
ACCCAGAAGGGTTCTGGTAAACACCTGTTACTTTTATATCTCATAATTAT
CCCTTCTAAACTATCTTTCCAATGAGGTATCACTTGCTATTGTGGCAATT
CCATTCAGAATTTCTGACAAAAACTAGAAAACAAAAAAGTGCCAACTGGC
AATTCTTTTGGGATAAAATTTTAGTGCTATTTAGATCATCTTGTTTTCTT
AAGATAAATTTTCTACATTTTTAGATTTTTCTTTCTTTTACATCATCAAC
TTGCTAAGGCATAGAAATACCATTCTTAACTTATAGACAACTATTTTTTT
GCGCTCTTATAGCATTGATGCATCAAAAGTCGACAGACTCGGACGTTACA
TCAACGATTCCAAGAACCATAATTGTGTGGTTAAGACCATTGAAAACAGC
AGCGGAGTTCTATGTGTAGCAATATTTGCCGCAAGTGATATAGCCGAGGG
AAGGGAGTTTCGATATGACTACAATGATTGTAACTTATTCTGGAGAAAGC
AGGTATTTGAGGCATTGCTACTAAATTAAGTTGATTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030158XLOC_030158Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047343-exon-scaffold_126-1575043694:48097..48975TCONS_00047343-exon-scaffold_126-1575043694:48097..48975Clytia hemisphaericaexon
TCONS_00047343-exon-scaffold_126-1575043694:47465..47536TCONS_00047343-exon-scaffold_126-1575043694:47465..47536Clytia hemisphaericaexon
TCONS_00047343-exon-scaffold_126-1575043694:47099..47222TCONS_00047343-exon-scaffold_126-1575043694:47099..47222Clytia hemisphaericaexon
TCONS_00047343-exon-scaffold_126-1575043694:46741..46897TCONS_00047343-exon-scaffold_126-1575043694:46741..46897Clytia hemisphaericaexon
TCONS_00047343-exon-scaffold_126-1575043694:45837..46063TCONS_00047343-exon-scaffold_126-1575043694:45837..46063Clytia hemisphaericaexon
TCONS_00047343-exon-scaffold_126-1510915933:48097..48975TCONS_00047343-exon-scaffold_126-1510915933:48097..48975Clytia hemisphaericaexon
TCONS_00047343-exon-scaffold_126-1510915933:47465..47536TCONS_00047343-exon-scaffold_126-1510915933:47465..47536Clytia hemisphaericaexon
TCONS_00047343-exon-scaffold_126-1510915933:47099..47222TCONS_00047343-exon-scaffold_126-1510915933:47099..47222Clytia hemisphaericaexon
TCONS_00047343-exon-scaffold_126-1510915933:46741..46897TCONS_00047343-exon-scaffold_126-1510915933:46741..46897Clytia hemisphaericaexon
TCONS_00047343-exon-scaffold_126-1510915933:45837..46063TCONS_00047343-exon-scaffold_126-1510915933:45837..46063Clytia hemisphaericaexon
TCONS_00047343-exon-scaffold_126-1491911889:48097..48975TCONS_00047343-exon-scaffold_126-1491911889:48097..48975Clytia hemisphaericaexon
TCONS_00047343-exon-scaffold_126-1491911889:47465..47536TCONS_00047343-exon-scaffold_126-1491911889:47465..47536Clytia hemisphaericaexon
TCONS_00047343-exon-scaffold_126-1491911889:47099..47222TCONS_00047343-exon-scaffold_126-1491911889:47099..47222Clytia hemisphaericaexon
TCONS_00047343-exon-scaffold_126-1491911889:46741..46897TCONS_00047343-exon-scaffold_126-1491911889:46741..46897Clytia hemisphaericaexon
TCONS_00047343-exon-scaffold_126-1491911889:45837..46063TCONS_00047343-exon-scaffold_126-1491911889:45837..46063Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_126supercontigscaffold_126:45837..48975 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0.826938	0	1.21211e-08	0	0	0.428673	0.0186151	0	0.0518859	0	0	0	0	0	0	0	0.0591716	0.3352	0	0	0	0.031502	0.0320956
Blast
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BLAST of TCONS_00047343 vs. Swiss-Prot (Human)
Match: BRAF (Serine/threonine-protein kinase B-raf OS=Homo sapiens GN=BRAF PE=1 SV=4)

HSP 1 Score: 95.9005 bits (237), Expect = 7.620e-21
Identity = 68/219 (31.05%), Postives = 114/219 (52.05%), Query Frame = 2 
Query:   74 ELKDLSIDFTQKVGEGAYASVYKHNIRNSDAAIKLF----KKPISLKKLLVTSVKMNKLTHENVVRFLAYSVKPS-AIVFELCEVKASDDTLVHNVAELIDLFNENEYFNLKERLDIVLQSAKGLSYLHNNSIIHKDFKPNNCLVTGDLDNIKVKVADFDDIFDIKNTVTSTLTSNCNQKKQGITLAYSAPDLL-LENKTP-SVESDVYSFAISTYAIL 709
            E+ D  I   Q++G G++ +VYK    + D A+K+       P  L+        + K  H N++ F+ YS KP  AIV + CE      +L H++  +I+       F + + +DI  Q+A+G+ YLH  SIIH+D K NN  +  DL    VK+ DF        TV S  + +   ++   ++ + AP+++ +++K P S +SDVY+F I  Y ++
Sbjct:  451 EIPDGQITVGQRIGSGSFGTVYKGKW-HGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTKPQLAIVTQWCE----GSSLYHHL-HIIET-----KFEMIKLIDIARQTAQGMDYLHAKSIIHRDLKSNNIFLHEDL---TVKIGDFG-----LATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELM 650
The following BLAST results are available for this feature:
BLAST of TCONS_00047343 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
BRAF7.620e-2131.05Serine/threonine-protein kinase B-raf OS=Homo sapi... [more]
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