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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047344 ID=TCONS_00047344|Name=TCONS_00047344|organism=Clytia hemisphaerica|type=transcript|length=1817bp
CTGGAGTCGAACGATCAGGAACGCAAAAAAGGCAAAAGCAGTCAGCAGTG
TTTATCCAACAACTTTATCATGCAACTTATTGGTTTCACCAGGTCTTGTT
TTGTTATCCTTGCTCGTTAGTATGTACTTACCTCTTTGTGGTTTTTGCCT
TCACAGCTTAGGTGCAGAAATATGATCTTCTCAAAACCAATCGACAGAGT
GGTAAATTTTTGTGGGGCTCAAATCATAGCATGTCTGTTGATCTTAGCAG
CGTGCAGCGTGCATTGGgcagatttttattttgatgggCATTATTACAAA
ATTGGGTTATGGAAAGTTTGTACTGTAAAGGCAGACGAATGCAACTCCTT
TGACATGTGGCTTGAAGAAGACGAGAAACTCCCGAGTTGGTTAAGCCAAA
TCCGCATATTGATTTGCTTCGCAACAGTATCAGCAGTAGTTGGTCTTCTA
ACGTCCTTGATGGGGATTTTCTATTGGAAAATCAAATGCGTTTACACTTC
ACTTCTACACTTTATATCTACCGGACTTCTGGTTGGAGTGtgtttcattt
tttacaaaaataaccACTTCGGGCAATAtgtaaaagtgaaaaatctCTCA
TCGTTTTATGTAGCAATGATCACAGCTGCATTGACTTTTTTACTTGCAGT
CTTTGGAATAATGGCTGATTTTTGTAGTAGCTGTTGAgttagccaatttt
ttttttataaacttttgttTTACTGGTACGTGCAGCGTGCATTGGgcaga
tttttattttgatgggCATTATTACAAAATTGGCTTATGGAAAGTTTGTC
CTGTAAAGGCAGACGAATGCAACTCCTTTGACATGTGGCTTGAAGAAGAC
GAGAAACTCCCGAGTTGGTTAATCCAAATCCGCATATTGATTTGCTTCAC
AACAGTATCAGCAGTAGTTGGTCTTCTAACATCCTTGATGGGGATTTtct
attagaaaatcaaatgcGTTTACACTTCACTTCTACACTTTATATCTACC
GAACTTCTGGTTGGAGTGtgtttcattttttacaaaaataaccACTTCGG
GCAATAtgtaaaagtgaaaaatctCTCATCGTTTTATGTAGCAATGATCA
CAGCTGCATTGACTTTTTTACTTGCAGTCTTTGGAATAATGGCTGATTTT
TGTAGTAGCTGTTGAgttagccaatttttttttgttataaacttttGTTT
TACTGGTAGTTAGGCTGATGATATTAACATACCAGTTTAGCGTCAGCCGC
CTGCATGTCTTGAAAGTGCCTAcaagaaaatttcattatttaaaaaattt
tcattattctaTATTTCTTCACAACATACAACCTCCATCTTCGTTAATAT
CAGTTATCTCAATGCATGACCCTTTTCCAGGGGTAAACATGGGCATAAAC
AAAGAATTCTACAACTGCAATGTCTGGCAGTGTGAATCCCGCCCATCTAT
CCAGATTTCTTCAGGCAGTTTTGCACACCTTTGTTTTTTGTTCGGGAGGT
AAATAaacctatttttgctttagttTGCTTAGAGAAAGGTagtttttcgg
atttttctCAGCTTCTGTCGTATAGAATTTTAAATCTCTAGCATGTTCTT
ACTTTCCATGATACAAGAGCAcacagaaaatttcatttcaaacaaaactg
ggcatcaaaagttataaacCAAAAGCTGACTTTTCCTAAGCAAACTCAGC
TTAAACGGGATTTTTACCTCCCAAAATTTTTATACACAATTTGGTGGAGT
GCGGACCTTTCCGAGTGAAATTTTGATTACGGGAATGGTGTTTTTGCCAT
ATCTAGCACCACTGCAG Run BLAST on NCBI protein sequence of TCONS_00047344-protein >TCONS_00047344-protein ID=TCONS_00047344-protein|Name=TCONS_00047344-protein|organism=Clytia hemisphaerica|type=polypeptide|length=171bp
MIFSKPIDRVVNFCGAQIIACLLILAACSVHWADFYFDGHYYKIGLWKVC
TVKADECNSFDMWLEEDEKLPSWLSQIRILICFATVSAVVGLLTSLMGIF
YWKIKCVYTSLLHFISTGLLVGVCFIFYKNNHFGQYVKVKNLSSFYVAMI
TAALTFLLAVFGIMADFCSSC Run BLAST on NCBI transcript from alignment at scaffold_126:49770..56151- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047344 ID=TCONS_00047344|Name=TCONS_00047344|organism=Clytia hemisphaerica|type=transcript|length=6382bp|location=Sequence derived from alignment at scaffold_126:49770..56151- (Clytia hemisphaerica)
CTGGAGTCGAACGATCAGGAACGCAAAAAAGGCAAAAGCAGTCAGCAGTG
TTTATCCAACAACTTTATCATGCAACTTATTGGTTTCACCAGGTCTTGTT
TTGTTATCCTTGCTCGTTAGTATGTACTTACCTCTTTGTGGTTTTTGCCT
TCACAGCTTAGGTGTAAGTTATTTGATAATGTTCACTCCCTGTTTTGTTT
TTTGAGGGGGATCCTACCTTTTTGTTTTGTGGGACAATATACAATAGACC
TAACTCTTGATACAAAAACTACGGAAAAACGCATATTTGGACTTTGTACC
CTATGCTTCACACAAGCACTTAAGCCAAAGTCTCGCAAAGGCGAGACAAA
AATCAGTTTTTTGAAGTTTGCAAAAAAACGTCACATATTTGTGGCCTATT
TTCGCAACTATAGATGCTTTCATTGAGCGTCCCGTCAGCACCTTGGACTG
ACTACCCGAATTCCCCTCACATGGCATGGGTTGACCTGGGCGAAGGTTCA
TTCACTTGCCAAGTGAACTGCTGCGAGTGGGAATCAAACCTGCCGGCGCA
CCACGACCCTCGACATGGCCCGAGAATTCGGGCCATGTTCGGGCCATGTC
AGAAGATTCCATATTTAAATTGATTCAACATGTCCAGTCAAACAAAATCG
TACAAAATAAGATTTGTCTGTTTTGTTTATATCGCTCAAAAAAACTTTAC
GAGCCTTCCCCCCGTGGACACGCTTCAGTTTAAAACCAGGACCAGTTTAC
TAGCAAATATTTCCACCCTAACAGTTACATCAATATGCCTTCTTACCTGT
CTTTAAAAATATAAATAAAAGTAATCACTGAAAAGGACGCGAAAAAAAAA
GACATAAGTGTGAGAACAGAGTAATCATCCTCGTTAGAAAAAGTACCATT
AGAAGTCATAAAAAATCAACCTGAATAAATGCAATTGAAATTCCAGAGAN
NAGGAGGCTGAGTTTTAAACGAATCGTCAAGTTGAAACAAACGATAAATG
TATCAAGGTCTGTTTTATTTACCCCCTGGTGACTTAACAAAAAAGACTTA
ACTCGATGTTACAATCCAATTATTGAAAGTTTGTCTCAGCCTTTTCTCAA
CTTCAGTTGAGCTAGAATCTGAGAATGTCTGTGTGTGTGTGTGTGTTTGT
TACAGTACCAAACCGAGGACTTGTTTATGATTTTGGCGGCCTATTCGAGG
ACTTTTTAGAGACCGAGGACCTACGCACACGTCCTCGAAATCTATTTGTC
TGAAACCTCGTAAACGAGGTATTTAAGGCTAGAAAAGGCTTCTCTTTGAA
AATTTAAAAAAAAAATTGATGTCCTCGAAAAAACATTTTGGACATGTGAA
GTGCGGAGGGGTCTAAATCAGTTTTCACTTTTAAAACTTCCAGATGGTAC
AGAGCAATCTCCTTTACATCCGTAATTATTGTTACAACGGAAGGACAGCC
AGTTAATTAATTATCGAGAAAACAATTTTCCTTTACGCATGTCACAAACG
CGCTTTTGAGAATGTCCTCACTTTCGTATTTGAGACACATATGTCCTCAC
TTCCAACTTTAAGGCGCGTTTTTCCTCACCTTTTTTTACCGAAGTTGATC
TTAGACCAATGAGCAAGATGAATGATAATAGATCGGAAGAATGATTGACA
GATTGAACTTCTTCACCCGCGGGCGTTCACGGGCGAATTAGAGGGTGGTT
TATGTTGCGACTCGGCCGAGAGCCTAGGGGTCGGCCTTTCCACGGCACCG
AATTCAAAAATGGTAGCGTAGTCGTGAATCTCAATTTAAATGAACACCAC
GTTGTTTATTTAAACTAATGCTGGACGTTCAAAAGCTCTTAACAAAATTT
CTTTTATTTGAAGGCAATTCTGTGATTGTTTTTGTCTTATCTGGCAAATG
AGGTTAGTAGGTTTTGAAATCGAGCATTTTATCATGTTGTCATTTTGTTA
GTCAGTGATGACTGCTCTCCTGGAAGTTTTACAAGATGAACTAGGTAGGT
TTGATCGCCACCAGAATAGTTTCAATTTGACCCTGGAATGGCTATTTTAG
GGCCCGTTTACATGGATTTTCGGTACTGTGTGAGATCTAGACCGTTCTGA
GTCTCTGTCTTGTTTACATGAGTGTCTCAGTACGGGCTGGATTTTCAATT
TCGGTTTGGGGTTGTCATAGTACTTTTAGCGGGCCGAATGATTACCACAG
ACTTCAAAAATGAAAATCTATCCTGTCGTTTAGAAAGCTCTAGAAAAAGC
TGCTCCAGTAATTTTTTTTTGAGTTCTGTGATAATCAACCCTATAAAAAA
TGCTACGACCACCCCGAACTGAAATCTTTTAGCGTTTACATGGATCTTCT
GGACTGTACTGAAATTTCGGTATGGTGATTTTGACCGTTCCGAAAGTTTG
GGCGTGCTGAAATCTCAGACCGGTCTGGCATATAAACGATATGAGACTTC
AGATTGTAGACCGTACCGAAAAAATCTCAGTATATGCCCGTACCGAAAAT
CCATGTAAACGGGCCCTTAGACTCAACTGGCAAACCTTGTTTTTACCCCA
AAAACTAGTACGAAAGTAAAAAAGCAATGCTAATAGTCATTGTATGATTG
CTTTCAATCTTTCCTAGCATCAATAATTAAAAATTCAATTACTCAAATTA
AAATATTTATTGAAAAAACTCTGAATGACACTTTTTCATGCGAAAAGCTA
CTTTCACTTTCCCAGACCCAATCAATCGAATTTGTCGAACCATCGAACTA
ATCGAACTTCATCGAACGATTAAAGTTTAAAGATTAAAGATTAAATTTCC
ATTTTTTTTCAAATATTGTACGTGTTCGATTAAGTTCGATCACTAATTTT
GGTATGATTAGTTTGACAACCTAATTTGTTCGATTAGTTCGCACCATTAA
ATGTTCAATTTTAAAGTAAAAATCGGATTGTAAAATCGGGAAAGCTACTC
CCAATATCGGAAACATTTTTCCCAAACCAGTGCTAACATTGCGTCAGCAA
CTCGCACCCGGTCGTGTGTTAGCAGTCGTGTGGACTAAATATTGTCGGGT
CGGTAAACTGAATATCCAGGAGACTATTTTCAGCCTCGAGTTCCTTATAA
ACGTGTTCCTTATAAAAAAAAAACGTGTACCCTGGATATCCAAGTTCTGA
CAAAGTTTTGAAATTCAGAAGTCTAGAAGTCTAAAAACCCAGGGTCGACA
AATCTTCAGCTGCGTGCAATCATTTTTTTAATAGGGCACATGTGCTGCAT
TCAAAATTTTGAACATCAAATTGAGTTAGGTGAACCAGTCAGTGAACACA
TATTATATACACAATGATATTTTATATATGCACCTTCACTTTGCTAATAT
CCAATTGTATGCAATGCAAAAGTATTGGGTTCAGTGTTGAACTATTTTTT
GTACAACAGACTGCTTAAATCGTAATTTTTATGTTCGGTTGAAAAATTTT
ACGTTTTCTATACCGGCAATGAAAAAGTTTGTGTAATTTACGATGCGCGA
TCCAACCATTCACAATGCAGGATGCACGATCCATGCATTATCTATGTTAA
TTATTCTAATTATGCATGAATAAATTTTTATAAATAGCTACAAACATCAT
ACAACAATACCGGCAAAGAAACAAAAAAGAGAGGAAAAAGATTCATCATT
AAATTAGAATGATTAACATAACTTATATGATAGCAAGAGAAAGAAAACGT
TTGCTAATGTTGCATCACTCGCTTAATTGAAAGAAACTGCTTTGACGTCA
TACAAAAGTTTTGACGCAAGTAAATTATTAAAAGACAAACTCATCTTAGC
CTACTTTGTGTATACAGTAGTTTTTCTCTTTTTCTCTCCTCTTGGGTAAA
ACATGGTTGCAAAGAATTTACAATTCATTTGTAAGAAAACAAGAGAGCCA
TTCGTTGAACATTTTTTGCTGCACAGTGGACCGCTAAAATTGTAATTTTT
ATGTTTTTGGTAGAAAACTCATGTTTTTAACAGCTTTAATTTTTACGGTA
GTTATACCTTTACATTATAAATACTACATCATTTTATAATATTCCATAGC
CAGGGGGGGGTCGGTAGTAAAATCTCAGACATAATGACGTTTACTACGGT
GGTGGTGTGACGAAAAATCGAAAAAAAATTTTACTACCCANNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATCAGTCCGAA
AAGCAACTAAAAAATAGGTGGTCTCTATGACAAATTGTCCCAAAAGCTTT
TACTACCAGGGTAGTAAAATACCTCTTCCGACAAGAGTCTGGGTGGTGGT
ATGTAAAAATTCGTAAAAATCCTTTTACTACTCATATATGTCTGAGATTT
TACTACCGACCCCCCCCTGCCATAGCACATGAAGTATTGAGTTGAGTGTT
GAAGCATCTTTGGCATAGCTGGTCCCTTGACTTTTAATTTTTATGTTTGG
CATGTATCAGGGTATCGTGTTAAGTTTTTTGAAATGATACTTTTCAAAGA
CAGTCTGTAAAAGCTTGACTTTGACTTCAACCCGGACCCAAGAAAAAGTC
GACCCTTTTACAGACCGTCCTTTTCGAAGGTTTTTTTTAATGACTGTCTA
TAAATTTTATAACAAAAGCAAGGTTGTATTTTTTGGCTCTCTCAAGAGAC
CTGTCATAACTTGACTCATTTTATTTAGGCAGAAATATGATCTTCTCAAA
ACCAATCGACAGAGTGGTAAATTTTTGTGGGGCTCAAATCATAGCATGTC
TGTTGATCTTAGCAGCGTGCAGCGTGCATTGGGCAGATTTTTATTTTGAT
GGGCATTATTACAAAATTGGGTTATGGAAAGTTTGTACTGTAAAGGCAGA
CGAATGCAACTCCTTTGACATGTGGCTTGAAGAAGACGAGAAACTCCCGA
GTTGGTTAAGCCAAATCCGCATATTGATTTGCTTCGCAACAGTATCAGCA
GTAGTTGGTCTTCTAACGTCCTTGATGGGGATTTTCTATTGGAAAATCAA
ATGCGTTTACACTTCACTTCTACACTTTATATCTACCGGACTTCTGGTTG
GAGTGTGTTTCATTTTTTACAAAAATAACCACTTCGGGCAATATGTAAAA
GTGAAAAATCTCTCATCGTTTTATGTAGCAATGATCACAGCTGCATTGAC
TTTTTTACTTGCAGTCTTTGGAATAATGGCTGATTTTTGTAGTAGCTGTT
GAGTTAGCCAATTTTTTTTTTATAAACTTTTGTTTTACTGGTACGTGCAG
CGTGCATTGGGCAGATTTTTATTTTGATGGGCATTATTACAAAATTGGCT
TATGGAAAGTTTGTCCTGTAAAGGCAGACGAATGCAACTCCTTTGACATG
TGGCTTGAAGAAGACGAGAAACTCCCGAGTTGGTTAATCCAAATCCGCAT
ATTGATTTGCTTCACAACAGTATCAGCAGTAGTTGGTCTTCTAACATCCT
TGATGGGGATTTTCTATTAGAAAATCAAATGCGTTTACACTTCACTTCTA
CACTTTATATCTACCGAACTTCTGGTTGGAGTGTGTTTCATTTTTTACAA
AAATAACCACTTCGGGCAATATGTAAAAGTGAAAAATCTCTCATCGTTTT
ATGTAGCAATGATCACAGCTGCATTGACTTTTTTACTTGCAGTCTTTGGA
ATAATGGCTGATTTTTGTAGTAGCTGTTGAGTTAGCCAATTTTTTTTTGT
TATAAACTTTTGTTTTACTGGTAGTTAGGCTGATGATATTAACATACCAG
TTTAGCGTCAGCCGCCTGCATGTCTTGAAAGTGCCTACAAGAAAATTTCA
TTATTTAAAAAATTTTCATTATTCTATATTTCTTCACAACATACAACCTC
CATCTTCGTTAATATCAGTTATCTCAATGCATGACCCTTTTCCAGGGGTA
AACATGGGCATAAACAAAGAATTCTACAACTGCAATGTCTGGCAGTGTGA
ATCCCGCCCATCTATCCAGATTTCTTCAGGCAGTTTTGCACACCTTTGTT
TTTTGTTCGGGAGGTAAATAAACCTATTTTTGCTTTAGTTTGCTTAGAGA
AAGGTAGTTTTTCGGATTTTTCTCAGCTTCTGTCGTATAGAATTTTAAAT
CTCTAGCATGTTCTTACTTTCCATGATACAAGAGCACACAGAAAATTTCA
TTTCAAACAAAACTGGGCATCAAAAGTTATAAACCAAAAGCTGACTTTTC
CTAAGCAAACTCAGCTTAAACGGGATTTTTACCTCCCAAAATTTTTATAC
ACAATTTGGTGGAGTGCGGACCTTTCCGAGTGAAATTTTGATTACGGGAA
TGGTGTTTTTGCCATATCTAGCACCACTGCAG Coding sequence (CDS) from alignment at scaffold_126:49770..56151- >TCONS_00047344 ID=TCONS_00047344|Name=TCONS_00047344|organism=Clytia hemisphaerica|type=CDS|length=516bp|location=Sequence derived from alignment at scaffold_126:49770..56151- (Clytia hemisphaerica)
ATGATCTTCTCAAAACCAATCGACAGAGTGGTAAATTTTTGTGGGGCTCA
AATCATAGCATGTCTGTTGATCTTAGCAGCGTGCAGCGTGCATTGGGCAG
ATTTTTATTTTGATGGGCATTATTACAAAATTGGGTTATGGAAAGTTTGT
ACTGTAAAGGCAGACGAATGCAACTCCTTTGACATGTGGCTTGAAGAAGA
CGAGAAACTCCCGAGTTGGTTAAGCCAAATCCGCATATTGATTTGCTTCG
CAACAGTATCAGCAGTAGTTGGTCTTCTAACGTCCTTGATGGGGATTTTC
TATTGGAAAATCAAATGCGTTTACACTTCACTTCTACACTTTATATCTAC
CGGACTTCTGGTTGGAGTGTGTTTCATTTTTTACAAAAATAACCACTTCG
GGCAATATGTAAAAGTGAAAAATCTCTCATCGTTTTATGTAGCAATGATC
ACAGCTGCATTGACTTTTTTACTTGCAGTCTTTGGAATAATGGCTGATTT
TTGTAGTAGCTGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047344-exon-scaffold_126-1575043694:55989..56151 | TCONS_00047344-exon-scaffold_126-1575043694:55989..56151 | Clytia hemisphaerica | exon |
| TCONS_00047344-exon-scaffold_126-1575043694:49770..51423 | TCONS_00047344-exon-scaffold_126-1575043694:49770..51423 | Clytia hemisphaerica | exon |
| TCONS_00047344-exon-scaffold_126-1510915933:55989..56151 | TCONS_00047344-exon-scaffold_126-1510915933:55989..56151 | Clytia hemisphaerica | exon |
| TCONS_00047344-exon-scaffold_126-1510915933:49770..51423 | TCONS_00047344-exon-scaffold_126-1510915933:49770..51423 | Clytia hemisphaerica | exon |
| TCONS_00047344-exon-scaffold_126-1491911889:55989..56151 | TCONS_00047344-exon-scaffold_126-1491911889:55989..56151 | Clytia hemisphaerica | exon |
| TCONS_00047344-exon-scaffold_126-1491911889:49770..51423 | TCONS_00047344-exon-scaffold_126-1491911889:49770..51423 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_126 | supercontig | scaffold_126:49770..56151 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR004031 | PMP22/EMP/MP20/Claudin |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
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