TCONS_00047355 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047355
Unique NameTCONS_00047355
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length344

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047355 ID=TCONS_00047355|Name=TCONS_00047355|organism=Clytia hemisphaerica|type=transcript|length=344bp
AGTAAAATGAATGATATAGAATAATGAATGGGGATGAATATGTTGCACTA
TCGCCATCAACACATATGGTTCCATGTTCTCCTTTCTTAAGAACTTATGA
AGCCTCACCAGCACCTTGTGTTCCTGATGTTGATCGAAATGCTACACGAA
GACTTTATACCACAACTCAAGATTCGCAAGGTGGAACAATTTCACCGATG
AGATTTTCTCAACCATATTCACAAAGCTCACAAAATGATGCACAGCAGAT
ACCAGCTACACCTTGCattgatcaaaaacaaaaatcagtacaaaagaaaa
tttccttAGCCATGCCAAAGTACTATTAAAGTAATCAAAAAGGC
Run BLAST on NCBI

protein sequence of TCONS_00047355-protein

>TCONS_00047355-protein ID=TCONS_00047355-protein|Name=TCONS_00047355-protein|organism=Clytia hemisphaerica|type=polypeptide|length=101bp
MNGDEYVALSPSTHMVPCSPFLRTYEASPAPCVPDVDRNATRRLYTTTQD
SQGGTISPMRFSQPYSQSSQNDAQQIPATPCIDQKQKSVQKKISLAMPKY
Y
Run BLAST on NCBI

transcript from alignment at scaffold_126:195946..196853-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047355 ID=TCONS_00047355|Name=TCONS_00047355|organism=Clytia hemisphaerica|type=transcript|length=908bp|location=Sequence derived from alignment at scaffold_126:195946..196853- (Clytia hemisphaerica)
AGTAAAATGAATGATATAGAATAATGAATGGGGATGAATATGTTGCACTA
TCGCCATCAACACATATGGTTCCATGTTCTCCTTTCTTAAGAACTTATGA
AGCCTCACCAGCACCTTGTGTTCCTGATGTTGATCGAAATGCTACACGAA
GACTTTATACCACAACTCAAGGTTTACGAAATTTCCTCTTCTAATAAGAC
AGTTTCATTATAGTCATTATAAAAAACCATGGTCTGGTGATGTATTTTTT
TAGCTTTATTATCAAATTTTCTAAATAAATAAATATTTTTGTTTAAATAA
TAGGCAAGTTGCGATTTGCAAACTTTTTGACCAAGTTACCATATTTTCGA
CTCCTTGGGATTGGTTTATTTTCCAGTCACTCTATCAAAAACTATGCAAA
ACAAATCTATTTACGTACGAAAGCTCTAACTGTTAACAATAAAGAGAAAA
AAAGTCTTCCAGACTGGGTTTTTTTATAATGACTATGGTTTCGGACATTA
GACTGGATTCATTTGCAGTGGTTTTACAGATTTATCGATGTTTGCTTTTG
TGTTTACTTTTCTCTTGGAACCTCAAATGATTATATTTCAGATTCGCAAG
GTGGAACAATTTCACCGATGAGATTTTCTCAACCATATTCACAAAGCTCA
CAAAATGATGCACAGCAGATACCAGCTACACCTTGCATTGATCAAAAACA
AAAATCAGTACAAAAGAAAATTTCCTTAGGTTAGTAACATGTGAATGAAT
GATTTTTTTTATTTCAGCAATTATAACTATTTTGCTTAATTTCCCTTTTT
TTAATAAAAGAACTGCTGTTGCTGCTGTTCCCTTCGAGGAGTTCTAATTC
CTCAAATCTCTTTTTTTTTCCAGCCATGCCAAAGTACTATTAAAGTAATC
AAAAAGGC

Coding sequence (CDS) from alignment at scaffold_126:195946..196853-

>TCONS_00047355 ID=TCONS_00047355|Name=TCONS_00047355|organism=Clytia hemisphaerica|type=CDS|length=918bp|location=Sequence derived from alignment at scaffold_126:195946..196853- (Clytia hemisphaerica)
CCATGCCAAAGTACTATTAAATTCGCAAGGTGGAACAATTTCACCGATGA
GATTTTCTCAACCATATTCACAAAGCTCACAAAATGATGCACAGCAGATA
CCAGCTACACCTTGCATTGATCAAAAACAAAAATCAGTACAAAAGAAAAT
TTCCTTAGATGAATGGGGATGAATATGTTGCACTATCGCCATCAACACAT
ATGGTTCCATGTTCTCCTTTCTTAAGAACTTATGAAGCCTCACCAGCACC
TTGTGTTCCTGATGTTGATCGAAATGCTACACGAAGACTTTATACCACAA
CTCAAGCCATGCCAAAGTACTATTAAATTCGCAAGGTGGAACAATTTCAC
CGATGAGATTTTCTCAACCATATTCACAAAGCTCACAAAATGATGCACAG
CAGATACCAGCTACACCTTGCATTGATCAAAAACAAAAATCAGTACAAAA
GAAAATTTCCTTAGATGAATGGGGATGAATATGTTGCACTATCGCCATCA
ACACATATGGTTCCATGTTCTCCTTTCTTAAGAACTTATGAAGCCTCACC
AGCACCTTGTGTTCCTGATGTTGATCGAAATGCTACACGAAGACTTTATA
CCACAACTCAAGCCATGCCAAAGTACTATTAAATTCGCAAGGTGGAACAA
TTTCACCGATGAGATTTTCTCAACCATATTCACAAAGCTCACAAAATGAT
GCACAGCAGATACCAGCTACACCTTGCATTGATCAAAAACAAAAATCAGT
ACAAAAGAAAATTTCCTTAGATGAATGGGGATGAATATGTTGCACTATCG
CCATCAACACATATGGTTCCATGTTCTCCTTTCTTAAGAACTTATGAAGC
CTCACCAGCACCTTGTGTTCCTGATGTTGATCGAAATGCTACACGAAGAC
TTTATACCACAACTCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030165XLOC_030165Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047355-proteinTCONS_00047355-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047355-exon-scaffold_126-1575043694:196683..196853TCONS_00047355-exon-scaffold_126-1575043694:196683..196853Clytia hemisphaericaexon
TCONS_00047355-exon-scaffold_126-1575043694:196125..196262TCONS_00047355-exon-scaffold_126-1575043694:196125..196262Clytia hemisphaericaexon
TCONS_00047355-exon-scaffold_126-1575043694:195946..195980TCONS_00047355-exon-scaffold_126-1575043694:195946..195980Clytia hemisphaericaexon
TCONS_00047355-exon-scaffold_126-1510915933:196683..196853TCONS_00047355-exon-scaffold_126-1510915933:196683..196853Clytia hemisphaericaexon
TCONS_00047355-exon-scaffold_126-1510915933:196125..196262TCONS_00047355-exon-scaffold_126-1510915933:196125..196262Clytia hemisphaericaexon
TCONS_00047355-exon-scaffold_126-1510915933:195946..195980TCONS_00047355-exon-scaffold_126-1510915933:195946..195980Clytia hemisphaericaexon
TCONS_00047355-exon-scaffold_126-1491911889:196683..196853TCONS_00047355-exon-scaffold_126-1491911889:196683..196853Clytia hemisphaericaexon
TCONS_00047355-exon-scaffold_126-1491911889:196125..196262TCONS_00047355-exon-scaffold_126-1491911889:196125..196262Clytia hemisphaericaexon
TCONS_00047355-exon-scaffold_126-1491911889:195946..195980TCONS_00047355-exon-scaffold_126-1491911889:195946..195980Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_126supercontigscaffold_126:195946..196853 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
50.7198	44.847	13.0923	8.73325	14.5303	12.8823	17.907	15.499	31.4465	22.2188	21.2999	22.7528	21.6725	18.1509	25.9651	27.3841	31.1704	40.2391	20.1139	18.4167	33.2854	31.9752	94.0112	76.9776	36.1157	31.7287	85.4022	75.7607	44.336	52.8981
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047355 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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