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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047358 ID=TCONS_00047358|Name=TCONS_00047358|organism=Clytia hemisphaerica|type=transcript|length=1687bpRun BLAST on NCBI protein sequence of TCONS_00047358-protein >TCONS_00047358-protein ID=TCONS_00047358-protein|Name=TCONS_00047358-protein|organism=Clytia hemisphaerica|type=polypeptide|length=476bp MTDKGKTSSMKSEALVTIDETLQGIGFLIKCKKLNLEKANVTYKIDSTRTRun BLAST on NCBI transcript from alignment at scaffold_126:233842..245098- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00047358 ID=TCONS_00047358|Name=TCONS_00047358|organism=Clytia hemisphaerica|type=transcript|length=11257bp|location=Sequence derived from alignment at scaffold_126:233842..245098- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_126:233842..245098- >TCONS_00047358 ID=TCONS_00047358|Name=TCONS_00047358|organism=Clytia hemisphaerica|type=CDS|length=21465bp|location=Sequence derived from alignment at scaffold_126:233842..245098- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00047358 vs. Swiss-Prot (Human)
Match: MUS81 (Crossover junction endonuclease MUS81 OS=Homo sapiens GN=MUS81 PE=1 SV=3) HSP 1 Score: 238.039 bits (606), Expect = 4.425e-70 Identity = 125/297 (42.09%), Postives = 183/297 (61.62%), Query Frame = 3
Query: 690 FTLYPGMFNVVLLVDNAETVGGGRRKKEMAENLLKIGVKMEVRKLQLGDFLWIAKEKCGKQ----RELVLDFILERKRMDDLASSIVDGRFKEQKFRLKSCGLKKLIYLVEKYGSSEHFVVPETTLKQAVMNTQVVDGLFIKETTSIQDSVQYLRLMTNQLTRMYKDKILHGVSM-----EDVKTIKSNHPFSDVIALEEQHLIQFDEFSSQTDKNKVLTCREMFVKQLMQMKGVSAERAVAIVNLYPTPSCLMDALDQLPTNEQKMNIVTDLPFGKARKKIGLPISR---QLYAHY 1544
L PG + V+L VD ET GGG R E+ L ++ V VRKL +GDF+W+A+E + ELVLD I+ERKR+DDL SSI+DGRF+EQKFRLK CGL++ +YLVE++GS + +PE+TL QAV NTQV+DG F+K T I++S YL L+T L R+Y+ L + + S +P L+ F +F++ KNK + RE+F +QLMQ++GVS E+A A+V+ Y TP+ L+ A D T +++ +++ + G+ ++ +G +SR QLY Y
Sbjct: 260 LELRPGEYRVLLCVDIGETRGGGHRP-ELLRELQRLHVTHTVRKLHVGDFVWVAQETNPRDPANPGELVLDHIVERKRLDDLCSSIIDGRFREQKFRLKRCGLERRVYLVEEHGSVHNLSLPESTLLQAVTNTQVIDGFFVKRTADIKESAAYLALLTRGLQRLYQGHTLRSRPWGTPGNPESGAMTSPNPLCS--------LLTFSDFNAGAIKNKAQSVREVFARQLMQVRGVSGEKAAALVDRYSTPASLLAAYDACATPKEQETLLSTIKCGRLQRNLGPALSRTLSQLYCSY 547 The following BLAST results are available for this feature:
BLAST of TCONS_00047358 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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