TCONS_00047359 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047359
Unique NameTCONS_00047359
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length663

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047359 ID=TCONS_00047359|Name=TCONS_00047359|organism=Clytia hemisphaerica|type=transcript|length=663bp
ATCCCAAACCGTGATCTATAGGTACATAGGAAGCTAAAAAACCATGGTTC
ACAAAGTTCCGTTCAAGGTgggtttttggccattttttcctggACTAATA
TACACCATCAGTTGCAGAAAAAAGATTTCAGTATTGGTATATGACTGACA
AAGGAAAGACCAGTTCAATGAAATCAGAAGCATTGGTCACAATCGATGaA
ACACTTCAAGGCATTGGCTTTCTAATCAAAtgtaaaaagttgaatttaga
GAAGGCTAATGTCACATATAAAATCGATTCTACAAGAACGCAATCGCGAG
GATATATCTTTGTCTACATTGGTGACTTAGATGCTAAAGAAATTGCAGAT
ACTCCGTCTGACGAAAGTTATGCTCCAAAAGGATCCATTAACAGCAAGCT
GAAAGCTGCCAGCAACAATCCATCCATCCCACCAACTAAATCAACATCAA
CCGTTACAAGACCTCCACcaaatcaaaatgttaaaacatCCTCAATAACG
AGTAAGCCATCTCCAAGACCAGCAACACATATTGTGGATGATAATACAAG
ACCATCAGCTTCAAGTACAAATTTGCCAGCTTTTGGTAGTGAGAAGCCGG
GTGTCTCTACTATTTCTACTACTAGTAGCGGTATAAATGACGCATATGCA
ACTGTTATACGGT
Run BLAST on NCBI

transcript from alignment at scaffold_126:242205..245098-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047359 ID=TCONS_00047359|Name=TCONS_00047359|organism=Clytia hemisphaerica|type=transcript|length=2894bp|location=Sequence derived from alignment at scaffold_126:242205..245098- (Clytia hemisphaerica)
ATCCCAAACCGTGATCTATAGGTACATAGGAAGCTAAAAAACCATGGTTC
ACAAAGTTCCGTTCAAGGTGGGTTTTTGGCCATTTTTTCCTGGACTAATA
TACACCATCAGTTGCAGAAAAAAGGTTCTTTACTTGAACATCTTTTATTC
ACAAGTAGGCCCATCCCACTTTTAGGCCCCTCATCTTATCACATTTTGAT
CTTATTAAAACTCACTTGCCCTACACATTTGAGATTTTCTGTTTAAAAGC
TCTGACGTTAAACATTTCTCCCTACCACGGTAAGATTGGCAAGATTCCTT
CCAACTGGAACTAAATGTAAATAGATGAAAACTAACTGATATTATTTGTG
TAGATTTCAGTATTGGTATAAAACTAACTGATGTTATTTGTGTAGATTTC
AGTATTAATATAAAACTGACTGATATTATTTGTGTAGATTTCAGTATTGG
TATAAAACTAACTGATGTTATTTGTGTAGATTTCAGTATTGGTATAAAAC
TAACTGATATTATTTGTGTAGATTTCAGTATTAATATAAAACTGACTGAT
ATTATTTGTGTAGATTTCAGTATTAATATAAAACTAACTGATGTTATTTG
TGTAGATTTCAGTATTGGTATAAAACTAACTGATGTTATTTGTGTAGATT
TCAGTATTGGTATAAAACTAACTGATATTATTTGTGTAGATTTCAGTATT
GGTATATGACTAACTGATGTTATTTGTGTAGATTTCAGTATTGGTATATG
ACTAACTGATGTTATTTGTGTAGATTTCAGTATTGGTATAAAACTAACTG
ATATTATTTGTGTAGATTTCAGTATTAATATAAAACTAACTGATGTTATT
TGTGTAGATTTCAGTATTAATATAAAACTGACTGATGTTATTTGTGTAGA
TTTCAGTATTGGTATAAAACTAACTGATGTTATTTGTGTAGATTTCAGTA
TTGGTATAAAACTAACTGATATTATTTGTGTAGATTTCAGTATTGGTATA
TGACTAACTGATGTTATTTGTGTAGATTTCAGTATTGGTATATGACTAAC
TGATGTTATTTGTGTAGATTTCAGTATTGGTATAAAACTAACTGATATTA
TTTGTGTAGATTTCAGTATTAATATAAAACTAACTTATGTTATTTGTGTA
GATTTCAGTATTGGTATAAAACTAACTGATATTATTTGTGTAGATTTCAG
TATTAATATAAAACTAACTTATGTTATTTGTGTAGATTTCAGTATTAATA
TAAAACTGACTGATATTATTTGTGTAGATTTCAGTATTGGTATATGACTG
ACAAAGGAAAGACCAGTTCAATGAAATCAGAAGCATTGGTCACAATCGAT
GGTAAGTTTGTTTCAGATTTTCTGCCATTTTTGGTTTGCGTGCATTTAAC
CTCAGAAAACTTTAATCCTTTGAATACCTATGCAATTTCTAAGTCCATTC
GCTTCAATTGAGCACAAATTCTTGTTCTGTTTGCAATTTTCCAACTAATG
TTTCGATTCTAACGTATTATATTAAAAAGAATTAATTTGGAGCCTTCTGA
ATTTGATTTTATTAATCACTTGTATCGAAAATTACAGCACACTAGAAACG
TCAGAGAAAAAAACAGCAAAAATAGGGTTTTTCGAATTCAGCACTTTTAA
TGCAATGTGAAAAATAATCATCTCTGAAAGCGGGAAGCATCAAAGTTCTT
CTATCCCTGTCTATACCAAAAATGAAGTTTCTACCGTAGTATCAAAGCAT
AAAAAGTTCTTTTTTCCTTTTTCATTTTTCTTCTTCATTTTCTAAAATTC
TTGAAATTGTTTATCTCAAAAATTTTAGTGCTCAGAATTATCGTTTCAAC
GATGTATAATTTGTTTGTTGAAACATCGTTTGGAAATGGCAACCAAAACA
AAATTAGTGCACATACATAAAGCAAATGGGCTTAAAAATTGCCTTAAAAG
TAAAAGATACATTGGTTCATGTTGATTCAAACTAGAAAAAGGAATTCCAT
ACCACCCAGTTATAAGAACCCCCTTTCTTTGAGGGTGCCTCAAGGAATGA
GGAGGTGGTCAAACTATGATGATGTGGGATTGTAATGAGCAATTTTTTTG
TCTTTAGAAACACTTCAAGGCATTGGCTTTCTAATCAAATGTAAAAAGTT
GAATTTAGAGAAGGCTAATGTCACATATAAAATCGATTCTACAAGGTAAC
AATATTTTAGTGTGGATAATTTCCATTGTGTCAGTTTAGTTTGAAACGAG
TTCACTAGTTACTTCAATTTAAATATCAAACAAACAAAGTTTATTATTTC
GGGAAGCTCCATTCCATTATTCTTTTCATACTTTTCTTAACATCACCTGG
CAAGGTGTTAATCTCCCTGTTCCTGTAGAAAACGATTCTACCCTCTTTAT
TTTAGAACGCAATCGCGAGGATATATCTTTGTCTACATTGGTGACTTAGA
TGCTAAAGAAATTGCAGATACTCCGTCTGACGAAAGTTATGCTCCAAAAG
GTTACCAATTATTTGCTAATTTTTTTAATAGATTGCTATTGTTTCTTTTT
TTGTAAATTTTTGTAAAGTGATTCTCTTTAAGTCTAATTCAACTGATCTT
TATTAGCTACAGGATCCATTAACAGCAAGCTGAAAGCTGCCAGCAACAAT
CCATCCATCCCACCAACTAAATCAACATCAACCGTTACAAGACCTCCACC
AAATCAAAATGTTAAAACATCCTCAATAACGAGTAAGCCATCTCCAAGAC
CAGCAACACATATTGTGGATGATAATACAAGACCATCAGCTTCAAGTACA
AATTTGCCAGCTTTTGGTAGTGAGAAGCCGGGTGTCTCTACTATTTCTAC
TACTAGTAGCGGTATAAATGACGCATATGCAACTGTTATACGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030167XLOC_030167Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047359-exon-scaffold_126-1575043694:244975..245098TCONS_00047359-exon-scaffold_126-1575043694:244975..245098Clytia hemisphaericaexon
TCONS_00047359-exon-scaffold_126-1575043694:243748..243821TCONS_00047359-exon-scaffold_126-1575043694:243748..243821Clytia hemisphaericaexon
TCONS_00047359-exon-scaffold_126-1575043694:242904..242991TCONS_00047359-exon-scaffold_126-1575043694:242904..242991Clytia hemisphaericaexon
TCONS_00047359-exon-scaffold_126-1575043694:242599..242693TCONS_00047359-exon-scaffold_126-1575043694:242599..242693Clytia hemisphaericaexon
TCONS_00047359-exon-scaffold_126-1575043694:242205..242486TCONS_00047359-exon-scaffold_126-1575043694:242205..242486Clytia hemisphaericaexon
TCONS_00047359-exon-scaffold_126-1510915933:244975..245098TCONS_00047359-exon-scaffold_126-1510915933:244975..245098Clytia hemisphaericaexon
TCONS_00047359-exon-scaffold_126-1510915933:243748..243821TCONS_00047359-exon-scaffold_126-1510915933:243748..243821Clytia hemisphaericaexon
TCONS_00047359-exon-scaffold_126-1510915933:242904..242991TCONS_00047359-exon-scaffold_126-1510915933:242904..242991Clytia hemisphaericaexon
TCONS_00047359-exon-scaffold_126-1510915933:242599..242693TCONS_00047359-exon-scaffold_126-1510915933:242599..242693Clytia hemisphaericaexon
TCONS_00047359-exon-scaffold_126-1510915933:242205..242486TCONS_00047359-exon-scaffold_126-1510915933:242205..242486Clytia hemisphaericaexon
TCONS_00047359-exon-scaffold_126-1491911889:244975..245098TCONS_00047359-exon-scaffold_126-1491911889:244975..245098Clytia hemisphaericaexon
TCONS_00047359-exon-scaffold_126-1491911889:243748..243821TCONS_00047359-exon-scaffold_126-1491911889:243748..243821Clytia hemisphaericaexon
TCONS_00047359-exon-scaffold_126-1491911889:242904..242991TCONS_00047359-exon-scaffold_126-1491911889:242904..242991Clytia hemisphaericaexon
TCONS_00047359-exon-scaffold_126-1491911889:242599..242693TCONS_00047359-exon-scaffold_126-1491911889:242599..242693Clytia hemisphaericaexon
TCONS_00047359-exon-scaffold_126-1491911889:242205..242486TCONS_00047359-exon-scaffold_126-1491911889:242205..242486Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_126supercontigscaffold_126:242205..245098 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.413536	1.425	1.38507	0	0	0.966123	0	2.28121	1.91905	1.14632	1.7557	1.73973	0.582854	1.30841	1.24711	0.695101	1.41393	1.53574	1.57376	0.451658	0.609133	1.18379	2.0326	2.94551	1.39398	2.34422	1.14703	1.69695	3.08545	0.794213
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047359 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top