Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047360 ID=TCONS_00047360|Name=TCONS_00047360|organism=Clytia hemisphaerica|type=transcript|length=1388bpRun BLAST on NCBI protein sequence of TCONS_00047360-protein >TCONS_00047360-protein ID=TCONS_00047360-protein|Name=TCONS_00047360-protein|organism=Clytia hemisphaerica|type=polypeptide|length=388bp MPGKAKKFPCPNPLFLEWLEEWKTEAEERGNNSKWTYIKAMNSLKKYPLPRun BLAST on NCBI transcript from alignment at scaffold_126:245783..252220- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00047360 ID=TCONS_00047360|Name=TCONS_00047360|organism=Clytia hemisphaerica|type=transcript|length=6438bp|location=Sequence derived from alignment at scaffold_126:245783..252220- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_126:245783..252220- >TCONS_00047360 ID=TCONS_00047360|Name=TCONS_00047360|organism=Clytia hemisphaerica|type=CDS|length=10503bp|location=Sequence derived from alignment at scaffold_126:245783..252220- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00047360 vs. Swiss-Prot (Human)
Match: MUS81 (Crossover junction endonuclease MUS81 OS=Homo sapiens GN=MUS81 PE=1 SV=3) HSP 1 Score: 100.138 bits (248), Expect = 2.031e-22 Identity = 83/250 (33.20%), Postives = 127/250 (50.80%), Query Frame = 3 Query: 177 GKAKKFP-CPNPLFXXXXXXXXXXXXXRGNNSKWTYIKAMNSLKKYPLPLHSGQEARILENIGETIAKKLDKRIEEHLRDGGSREDLHRVEIEVXXXXXXXXXXXXXXXXXFAQVPNSPNMKSPGRAYIPRFRSGPYALLITLYQESKKPTYVGFLTKIE-LQNLAQPLCDASFTVPDPGSQYTAWSSMGNLLKKGLVLKWSNPAKFNITSTGAELAERLLTGTDEMFQPEGSHEGLAGNTSMFSPPQPP 920 G+ + P CPNPLF+ WL EW+ EA +++ + KA+ SL++YPLPL SG+EA+IL++ G+ + + LD+R++ H GG H + + + + +D VP P G +Y P SG +L+ LY+E P FLTK E LQ AQ + PGS W ++ +LL + LVL+ PA++++T G ELA++L EGL+ P +PP Sbjct: 8 GRKRPLPACPNPLFVRWLTEWRDEATRSRRRTRFVFQKALRSLRRYPLPLRSGKEAKILQHFGDGLCRMLDERLQRHRTSGGD----HAPDSPSGENSPAPQGRLAEVQDSSMPVPAQPKAGGSG-SYWPARHSGARVILLVLYREHLNPNGHHFLTKEELLQRCAQKSPRVA-----PGSA-RPWPALRSLLHRNLVLRTHQPARYSLTPEGLELAQKL-----------AESEGLSLLNVGIGPKEPP 235 The following BLAST results are available for this feature:
BLAST of TCONS_00047360 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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