TCONS_00047361 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047361
Unique NameTCONS_00047361
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length523

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047361 ID=TCONS_00047361|Name=TCONS_00047361|organism=Clytia hemisphaerica|type=transcript|length=523bp
aaatttttataaatagCTACAAACATCATACAACAATACCggcaaagaaa
caaaaaagagaGGAAAAAGATTCATCATTAAATTAGAATGATTAACATAA
CTTATATGATAGCAAGAGAAAGAAAACGTTTGCTAATGTTGCATCACTCG
CTTAATTGAAAGAAACTGCTTTGACGTCATACAAAAGTTTTGACGCAAGT
AAATTATTAAAAGACAAACTCATCTTAGCCTACTTTGTGTATACAGtagt
ttttctctttttctctccTCTTGGGTAAAACATGGTTGCAAAGAATTTAC
AATTCATTTGTAAGAAAACAAGAGAGCCATTCGTTGAACATTTTTTGCTG
CACAGTGGACCGctaaaattgtaatttttatgtttttggtaGAAAACTCA
TGTTTTTAACAGCTTTAATTTTTACGGTAGTTATACCTTTACATTATAAA
TACTACATCATTTTATAATATTCCATAgccaggggggggtcggtagtaaa
atctcagacataatgacgtttac
Run BLAST on NCBI

transcript from alignment at scaffold_126:52058..52580

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047361 ID=TCONS_00047361|Name=TCONS_00047361|organism=Clytia hemisphaerica|type=transcript|length=523bp|location=Sequence derived from alignment at scaffold_126:52058..52580 (Clytia hemisphaerica)
gtaaacgtcattatgtctgagattttactaccgacccccccctggcTATG
GAATATTATAAAATGATGTAGTATTTATAATGTAAAGGTATAACTACCGT
AAAAATTAAAGCTGTTAAAAACATGAGTTTTCtaccaaaaacataaaaat
tacaattttagCGGTCCACTGTGCAGCAAAAAATGTTCAACGAATGGCTC
TCTTGTTTTCTTACAAATGAATTGTAAATTCTTTGCAACCATGTTTTACC
CAAGAggagagaaaaagagaaaaactaCTGTATACACAAAGTAGGCTAAG
ATGAGTTTGTCTTTTAATAATTTACTTGCGTCAAAACTTTTGTATGACGT
CAAAGCAGTTTCTTTCAATTAAGCGAGTGATGCAACATTAGCAAACGTTT
TCTTTCTCTTGCTATCATATAAGTTATGTTAATCATTCTAATTTAATGAT
GAATCTTTTTCCtctcttttttgtttctttgccGGTATTGTTGTATGATG
TTTGTAGctatttataaaaattt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030169XLOC_030169Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047361-exon-scaffold_126-1491911889:52058..52580TCONS_00047361-exon-scaffold_126-1491911889:52058..52580Clytia hemisphaericaexon
TCONS_00047361-exon-scaffold_126-1510915933:52058..52580TCONS_00047361-exon-scaffold_126-1510915933:52058..52580Clytia hemisphaericaexon
TCONS_00047361-exon-scaffold_126-1575043694:52058..52580TCONS_00047361-exon-scaffold_126-1575043694:52058..52580Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_126supercontigscaffold_126:52058..52580 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.128192	0.125407	1.06949	0.120519	0.290803	0	0.285925	0.473287	0.11487	0.226569	0.376703	0.156153	0	0	0.171558	0.0875156	0.121719	0	0.220803	0	0	0.118599	0	0.217194	0.310293	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047361 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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