|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047362 ID=TCONS_00047362|Name=TCONS_00047362|organism=Clytia hemisphaerica|type=transcript|length=2196bp
CTCGAAAAAACATTTTGGACATGTGAAGTGCGGAGGGGTCTAAATCAGTT
TTCACTTTTAAAACTTCCAGATGGTACAGAGCAATCTCCTTTACATCCGT
AATTATTGTTACAACGGAAGGACAGCCAGTTAATTAATTATCGAGAAAAC
AATTTTCCTTTACGCATGTCACAAACGCGCTTTTGAGAATGTCCTCACTT
TCGTATTTGAGACACATATGTCCTCACTTCCAACTTTAAGGCGCGTTTTT
CCTCACCTTTTTTTACCGAAGTTGATCTTAGACCAATGAGCAAGATGAAT
GATAATAGATCGGAAGAATGATTGACAGATTGAACTTCTTCACCCGCGGG
CGTTCACGGGCGAATTAGAGGGTGGTTTATGTTGCGACTCGGCCGAGAGC
CTAGGGGTCGGCCTTTCCACGGCACCGAATTCAAAAATGGTAGCGTAGTC
GTGAATCTCAATTTAAATGAACACCACGTTGTTTATTTAAACTAATGCTG
GACGTTCAAAAGCTCttaacaaaatttcttttatttgaaggCAATTCTGT
GATTGTTTTTGTCTTATCTGGCAAATGAGGTTAGTAGGTTTTGAAATCGA
GCATTTTATCATGTTGTCATTTTGTTAGTCAGTGATGACTGCTCTCCTGG
AAGTTttacaagatgaactaggtaGGTTTGATCgccaccagaatagtttc
aatttgaccctggaatggctaTTTTAGGGCCCGTTTACATGGATTTTCGG
TACTGTGTGAGATCTAGACCGTTCTGAGTCTCTGTCTTGTTTACATGAGT
GTCTCAGTACGGGCTGGATTTTCAATTTCGGTTTGGGGTTGTCATAGTAC
TTTTAGCGGGCCGAATGATTACCacagacttcaaaaatgaaaatctatcC
TGTCGTTTAGAAAGCTCTAGAAAAAGCTGCtccagtaatttttttttgag
ttctGTGATAATCAACCCTATAAAAAATGCTACGACCACCCCGAACTGAA
ATCTTTTAGCGTTTACATGGATCTTCTGGACTGTACTGAAATTTCGGTAT
GGTGATTTTGACCGTTCCGAAAGTTTGGGCGTGCTGAAATCTCAGACCGG
TCTGGCATATAAACGATATGAGACTTCAGATTGTAGACCGTACCGAAAAA
ATCTCAGTATATGCCCGTACCGAAAATCCATGTAAACGGGCCCTTAGACT
CAACTGGCAAACCTTGTTTTTACCCCAAAAACTAGTACGAAAGTAAAAAA
GCAATGCTAATAGTCATTGTATGATTGCTTTCAATCTTTCCTAGCATCAA
TAATTAAAaattcaattactcaaattaaaatatttattgaaaaaactCTG
AATGACACTTTTTCATGCGAAAAGCTACTTTCACTTTCCCAGACCCAATC
AATCGAATTTGTCGAaccatcgaactaatcgaacttcatcgaacgattaa
agtttaaagattaaagattaaatttccattttttttcaaatattgtacgt
gttcgattaagttcgatcactAATTTTGGTATGATTAGTTTGACAACCTA
ATTTGTTCGATTAGTTCGCACCATTAAATGTtcaattttaaagtaaaaat
cgGATTGTAAAATCGGGAAAGCTACTCCCAATATCGGAAACATTTTTCCC
AAACCAGTGCTAACATTGCGTCAGCAACTCGCACCCGGTCGTGTGTTAGC
AGTCGTGTGGACTAAATATTGTCGGGTCGGTAAACTGAATATCCAGGAGa
ctattttcagcctcgagttccttataaacgtgttccttataaaaaaaaaa
cgtgtaccctggatatccaagttctgacaaagttttgaaattcagAAGTC
TAGAAGTCTAAAAACCCAGGGTCGACAAATCTTCAGCTGCGTGCAATCAT
TTTTTTAATAGGGCACATGTGCtgcattcaaaattttgaacatcAAATTG
AGTTAGGTGAACCAGTCAGTGAACACATATTATATACACAATGATATTTT
ATATATGCACCTTCACTTTGCTAATATCCAATTGTATGCAATGCAAAAGT
ATTGGGTTCAGTGTTGAACTATTTTTTGTACAACAGACTGCTTAAATCGT
AATTTTTATGTTCGGTTGAAAAATTTTACGTTTTCTATACCGGCAATGAA
AaagtttgtgtaatttacgatgcgcgatccaaccaTTCACAATGCa Run BLAST on NCBI transcript from alignment at scaffold_126:52633..54828 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047362 ID=TCONS_00047362|Name=TCONS_00047362|organism=Clytia hemisphaerica|type=transcript|length=2196bp|location=Sequence derived from alignment at scaffold_126:52633..54828 (Clytia hemisphaerica)
tGCATTGTGAAtggttggatcgcgcatcgtaaattacacaaacttTTTCA
TTGCCGGTATAGAAAACGTAAAATTTTTCAACCGAACATAAAAATTACGA
TTTAAGCAGTCTGTTGTACAAAAAATAGTTCAACACTGAACCCAATACTT
TTGCATTGCATACAATTGGATATTAGCAAAGTGAAGGTGCATATATAAAA
TATCATTGTGTATATAATATGTGTTCACTGACTGGTTCACCTAACTCAAT
TTgatgttcaaaattttgaatgcaGCACATGTGCCCTATTAAAAAAATGA
TTGCACGCAGCTGAAGATTTGTCGACCCTGGGTTTTTAGACTTCTAGACT
Tctgaatttcaaaactttgtcagaacttggatatccagggtacacgtttt
ttttttataaggaacacgtttataaggaactcgaggctgaaaatagtCTC
CTGGATATTCAGTTTACCGACCCGACAATATTTAGTCCACACGACTGCTA
ACACACGACCGGGTGCGAGTTGCTGACGCAATGTTAGCACTGGTTTGGGA
AAAATGTTTCCGATATTGGGAGTAGCTTTCCCGATTTTACAATCcgattt
ttactttaaaattgaACATTTAATGGTGCGAACTAATCGAACAAATTAGG
TTGTCAAACTAATCATACCAAAATTagtgatcgaacttaatcgaacacgt
acaatatttgaaaaaaaatggaaatttaatctttaatctttaaactttaa
tcgttcgatgaagttcgattagttcgatggtTCGACAAATTCGATTGATT
GGGTCTGGGAAAGTGAAAGTAGCTTTTCGCATGAAAAAGTGTCATTCAGa
gttttttcaataaatattttaatttgagtaattgaattTTTAATTATTGA
TGCTAGGAAAGATTGAAAGCAATCATACAATGACTATTAGCATTGCTTTT
TTACTTTCGTACTAGTTTTTGGGGTAAAAACAAGGTTTGCCAGTTGAGTC
TAAGGGCCCGTTTACATGGATTTTCGGTACGGGCATATACTGAGATTTTT
TCGGTACGGTCTACAATCTGAAGTCTCATATCGTTTATATGCCAGACCGG
TCTGAGATTTCAGCACGCCCAAACTTTCGGAACGGTCAAAATCACCATAC
CGAAATTTCAGTACAGTCCAGAAGATCCATGTAAACGCTAAAAGATTTCA
GTTCGGGGTGGTCGTAGCATTTTTTATAGGGTTGATTATCACagaactca
aaaaaaaattactggaGCAGCTTTTTCTAGAGCTTTCTAAACGACAGgat
agattttcatttttgaagtctgtGGTAATCATTCGGCCCGCTAAAAGTAC
TATGACAACCCCAAACCGAAATTGAAAATCCAGCCCGTACTGAGACACTC
ATGTAAACAAGACAGAGACTCAGAACGGTCTAGATCTCACACAGTACCGA
AAATCCATGTAAACGGGCCCTAAAAtagccattccagggtcaaattgaaa
ctattctggtggcGATCAAACCtacctagttcatcttgtaaAACTTCCAG
GAGAGCAGTCATCACTGACTAACAAAATGACAACATGATAAAATGCTCGA
TTTCAAAACCTACTAACCTCATTTGCCAGATAAGACAAAAACAATCACAG
AATTGccttcaaataaaagaaattttgttaaGAGCTTTTGAACGTCCAGC
ATTAGTTTAAATAAACAACGTGGTGTTCATTTAAATTGAGATTCACGACT
ACGCTACCATTTTTGAATTCGGTGCCGTGGAAAGGCCGACCCCTAGGCTC
TCGGCCGAGTCGCAACATAAACCACCCTCTAATTCGCCCGTGAACGCCCG
CGGGTGAAGAAGTTCAATCTGTCAATCATTCTTCCGATCTATTATCATTC
ATCTTGCTCATTGGTCTAAGATCAACTTCGGTAAAAAAAGGTGAGGAAAA
ACGCGCCTTAAAGTTGGAAGTGAGGACATATGTGTCTCAAATACGAAAGT
GAGGACATTCTCAAAAGCGCGTTTGTGACATGCGTAAAGGAAAATTGTTT
TCTCGATAATTAATTAACTGGCTGTCCTTCCGTTGTAACAATAATTACGG
ATGTAAAGGAGATTGCTCTGTACCATCTGGAAGTTTTAAAAGTGAAAACT
GATTTAGACCCCTCCGCACTTCACATGTCCAAAATGTTTTTTCGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047362-exon-scaffold_126-1491911889:52633..54828 | TCONS_00047362-exon-scaffold_126-1491911889:52633..54828 | Clytia hemisphaerica | exon |
| TCONS_00047362-exon-scaffold_126-1510915933:52633..54828 | TCONS_00047362-exon-scaffold_126-1510915933:52633..54828 | Clytia hemisphaerica | exon |
| TCONS_00047362-exon-scaffold_126-1575043694:52633..54828 | TCONS_00047362-exon-scaffold_126-1575043694:52633..54828 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_126 | supercontig | scaffold_126:52633..54828 . |
Blast
The following BLAST results are available for this feature:
|
