TCONS_00047367 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047367
Unique NameTCONS_00047367
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length262

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047367 ID=TCONS_00047367|Name=TCONS_00047367|organism=Clytia hemisphaerica|type=transcript|length=262bp
ggaGCTTTCTCTTTATTTCTTCGTTTTGGGGTTTCGCATTATAGTTCGCA
TAGTGAAATCGGCAGAGAGTACATCTCATCGtcactttataagaacaaca
aatttatttatttttctttatgacCATAGCAACgagtaaaaatcaaattt
gaaaacattattcAAGGTTCTTGTCGGCCAAATCAGGGATTGCTAAATCA
GCAATATTCACAGTAGTGCGCATGCGCATGAATCAGCACTACAAGCTGGC
GTGCGAAGACTG
Run BLAST on NCBI

transcript from alignment at scaffold_126:141112..141373

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047367 ID=TCONS_00047367|Name=TCONS_00047367|organism=Clytia hemisphaerica|type=transcript|length=262bp|location=Sequence derived from alignment at scaffold_126:141112..141373 (Clytia hemisphaerica)
CAGTCTTCGCACGCCAGCTTGTAGTGCTGATTCATGCGCATGCGCACTAC
TGTGAATATTGCTGATTTAGCAATCCCTGATTTGGCCGACAAGAACCTTg
aataatgttttcaaatttgatttttactcGTTGCTATGgtcataaagaaa
aataaataaatttgttgttcttataaagtgaCGATGAGATGTACTCTCTG
CCGATTTCACTATGCGAACTATAATGCGAAACCCCAAAACGAAGAAATAA
AGAGAAAGCtcc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030175XLOC_030175Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047367-exon-scaffold_126-1491911889:141112..141373TCONS_00047367-exon-scaffold_126-1491911889:141112..141373Clytia hemisphaericaexon
TCONS_00047367-exon-scaffold_126-1510915933:141112..141373TCONS_00047367-exon-scaffold_126-1510915933:141112..141373Clytia hemisphaericaexon
TCONS_00047367-exon-scaffold_126-1575043694:141112..141373TCONS_00047367-exon-scaffold_126-1575043694:141112..141373Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_126supercontigscaffold_126:141112..141373 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.27398	0	2.16369	0.705612	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.708571	0	0	0	0	0	0	0	0	0	0.720329
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047367 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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