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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047370 ID=TCONS_00047370|Name=TCONS_00047370|organism=Clytia hemisphaerica|type=transcript|length=1210bp
AAACTATTTAGTtattttcaatacttgaagtttcgtgtttacacattcat
cagttgattagaaatcGAAGCAGGGAACTTCAAGTATTAAGCTGTCCTTA
TTTTAGAGCTATTTAATGGCTTGATGAGgaatatttgcaaaaaaattact
tctcaagactttttcttcaaattttgtcattctgTGAAAATGTCAATGGA
TGCTGGTAAGAATGCAGCAGCAATCGAGGCTGTCAATAGATTTGTgacaa
ccaatcaaaatattggGATAGGAAGTGGATCTACCATTGTGTTTGCTGTC
AAGAGATTGGCCGAGAGAGTTGCAGCTGAAAACCTGAAAGTTAAATGTAT
ACCAACATCATTTCAAGCTAAACAATTGATCACCGAAAACaatttgtttt
tgagtgatCTTGAACAATCTCCAAAATTAGATATTGCTATTGATGGAGCA
GATGAAGTTGATGTGAATGGTAATTGCATCAAAGGTGGAGGTGGTTGCTT
GACTCAAGAAAAAATCGTGGCATCTTGTGCAAAAACATTTGTCATCATTG
CAGATTCAACAAAGAATTCCTTAAAATTAGGTGAGAAGTGGACAAAAGGT
GTCCCCGTAGAAGTAATTCCAATGGCATACAAAGTTGTCATGTTGAAATT
TGAGCAGATGGGCCTAAAGCCTGTTTTAAGAATGGCAAAATCTAAAGCTG
GACCATTAGTAACTGATAATGGGAACTTTATTATTGATTTTGGGTTTGAT
GAGGTAAGCAATTGGAAAGAATTGAATGAGAAAATCATAAATATTCCAGG
GGTTGTTGAGACTGGACTTTTCATTAATATGCATCACTGTGCTATATTTG
GTAATCAAGATGGTACTATAACAACTGTATAAATCATTAGTTACTAGTTA
CTAGTTCTATGTGATTACCTTGCAATTGCTGTTTTTCTTAAATGGATTGA
TTTTGTACCTTTTTTATGTATATTTTCTTCTAAATTGAGGAATTTTATTT
CCAAGACATTGATTTTGTTGGGagctttatgttttttttctatcgttact
tactttttctattcaaaatatattataataGTGAATTACCCATCTCATTC
TTCATAGGTGGGTAGGAAATGCTGCTGGAGAGGGGTATCTTCTTCAGGTA
GGGTAGCACTTTGGGATTTTAGTCAAATTCAGGGCTATGTTTGCAACTTT
Tggcaagaat Run BLAST on NCBI protein sequence of TCONS_00047370-protein >TCONS_00047370-protein ID=TCONS_00047370-protein|Name=TCONS_00047370-protein|organism=Clytia hemisphaerica|type=polypeptide|length=252bp
MRNICKKITSQDFFFKFCHSVKMSMDAGKNAAAIEAVNRFVTTNQNIGIG
SGSTIVFAVKRLAERVAAENLKVKCIPTSFQAKQLITENNLFLSDLEQSP
KLDIAIDGADEVDVNGNCIKGGGGCLTQEKIVASCAKTFVIIADSTKNSL
KLGEKWTKGVPVEVIPMAYKVVMLKFEQMGLKPVLRMAKSKAGPLVTDNG
NFIIDFGFDEVSNWKELNEKIINIPGVVETGLFINMHHCAIFGNQDGTIT
TV Run BLAST on NCBI transcript from alignment at scaffold_126:197986..199195 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047370 ID=TCONS_00047370|Name=TCONS_00047370|organism=Clytia hemisphaerica|type=transcript|length=1210bp|location=Sequence derived from alignment at scaffold_126:197986..199195 (Clytia hemisphaerica)
attcttgccAAAAGTTGCAAACATAGCCCTGAATTTGACTAAAATCCCAA
AGTGCTACCCTACCTGAAGAAGATACCCCTCTCCAGCAGCATTTCCTACC
CACCTATGAAGAATGAGATGGGTAATTCACtattataatatattttgaat
agaaaaagtaagtaacgatagaaaaaaaacataaagctCCCAACAAAATC
AATGTCTTGGAAATAAAATTCCTCAATTTAGAAGAAAATATACATAAAAA
AGGTACAAAATCAATCCATTTAAGAAAAACAGCAATTGCAAGGTAATCAC
ATAGAACTAGTAACTAGTAACTAATGATTTATACAGTTGTTATAGTACCA
TCTTGATTACCAAATATAGCACAGTGATGCATATTAATGAAAAGTCCAGT
CTCAACAACCCCTGGAATATTTATGATTTTCTCATTCAATTCTTTCCAAT
TGCTTACCTCATCAAACCCAAAATCAATAATAAAGTTCCCATTATCAGTT
ACTAATGGTCCAGCTTTAGATTTTGCCATTCTTAAAACAGGCTTTAGGCC
CATCTGCTCAAATTTCAACATGACAACTTTGTATGCCATTGGAATTACTT
CTACGGGGACACCTTTTGTCCACTTCTCACCTAATTTTAAGGAATTCTTT
GTTGAATCTGCAATGATGACAAATGTTTTTGCACAAGATGCCACGATTTT
TTCTTGAGTCAAGCAACCACCTCCACCTTTGATGCAATTACCATTCACAT
CAACTTCATCTGCTCCATCAATAGCAATATCTAATTTTGGAGATTGTTCA
AGatcactcaaaaacaaattGTTTTCGGTGATCAATTGTTTAGCTTGAAA
TGATGTTGGTATACATTTAACTTTCAGGTTTTCAGCTGCAACTCTCTCGG
CCAATCTCTTGACAGCAAACACAATGGTAGATCCACTTCCTATCccaata
ttttgattggttgtcACAAATCTATTGACAGCCTCGATTGCTGCTGCATT
CTTACCAGCATCCATTGACATTTTCAcagaatgacaaaatttgaagaaaa
agtcttgagaagtaatttttttgcaaatattcCTCATCAAGCCATTAAAT
AGCTCTAAAATAAGGACAGCTTAATACTTGAAGTTCCCTGCTTCgatttc
taatcaactgatgaatgtgtaaacacgaaacttcaagtattgaaaataAC
TAAATAGTTT Coding sequence (CDS) from alignment at scaffold_126:197986..199195 >TCONS_00047370 ID=TCONS_00047370|Name=TCONS_00047370|organism=Clytia hemisphaerica|type=CDS|length=759bp|location=Sequence derived from alignment at scaffold_126:197986..199195 (Clytia hemisphaerica)
TTATACAGTTGTTATAGTACCATCTTGATTACCAAATATAGCACAGTGAT
GCATATTAATGAAAAGTCCAGTCTCAACAACCCCTGGAATATTTATGATT
TTCTCATTCAATTCTTTCCAATTGCTTACCTCATCAAACCCAAAATCAAT
AATAAAGTTCCCATTATCAGTTACTAATGGTCCAGCTTTAGATTTTGCCA
TTCTTAAAACAGGCTTTAGGCCCATCTGCTCAAATTTCAACATGACAACT
TTGTATGCCATTGGAATTACTTCTACGGGGACACCTTTTGTCCACTTCTC
ACCTAATTTTAAGGAATTCTTTGTTGAATCTGCAATGATGACAAATGTTT
TTGCACAAGATGCCACGATTTTTTCTTGAGTCAAGCAACCACCTCCACCT
TTGATGCAATTACCATTCACATCAACTTCATCTGCTCCATCAATAGCAAT
ATCTAATTTTGGAGATTGTTCAAGatcactcaaaaacaaattGTTTTCGG
TGATCAATTGTTTAGCTTGAAATGATGTTGGTATACATTTAACTTTCAGG
TTTTCAGCTGCAACTCTCTCGGCCAATCTCTTGACAGCAAACACAATGGT
AGATCCACTTCCTATCccaatattttgattggttgtcACAAATCTATTGA
CAGCCTCGATTGCTGCTGCATTCTTACCAGCATCCATTGACATTTTCAca
gaatgacaaaatttgaagaaaaagtcttgagaagtaatttttttgcaaat
attcCTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047370-exon-scaffold_126-1491911889:197986..199195 | TCONS_00047370-exon-scaffold_126-1491911889:197986..199195 | Clytia hemisphaerica | exon |
| TCONS_00047370-exon-scaffold_126-1510915933:197986..199195 | TCONS_00047370-exon-scaffold_126-1510915933:197986..199195 | Clytia hemisphaerica | exon |
| TCONS_00047370-exon-scaffold_126-1575043694:197986..199195 | TCONS_00047370-exon-scaffold_126-1575043694:197986..199195 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_126 | supercontig | scaffold_126:197986..199195 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR004788 | Ribose5P_isomerase_typA |
| IPR020672 | Ribose5P_isomerase_typA_subgr |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0009052 | pentose-phosphate shunt, non-oxidative branch |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004751 | ribose-5-phosphate isomerase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0009052 |
pentose-phosphate shunt, non-oxidative branch |
| molecular_function |
GO:0004751 |
ribose-5-phosphate isomerase activity |
Blast
BLAST of TCONS_00047370 vs. Swiss-Prot (Human)
Match: RPIA (Ribose-5-phosphate isomerase OS=Homo sapiens GN=RPIA PE=1 SV=3) HSP 1 Score: 258.84 bits (660), Expect = 1.385e-82 Identity = 133/222 (59.91%), Postives = 160/222 (72.07%), Query Frame = 1
Query: 208 KNAAAIEAVNRFVTTNQNIGIGSGSTIVFAVKRLAERVAAENLKVKCIPTSFQAKQLITENNLFLSDLEQSPKLDIAIDGADEVDVNGNCIKGGGGCLTQEKIVASCAKTFVIIADSTKNSLKLGEKWTKGVPVEVIPMAYKVVMLKFEQ-MGLKPVLRMAKSKAGPLVTDNGNFIIDFGFDEVSNWKELNEKIINIPGVVETGLFINMHHCAIFGNQDGTI 870
K A AV V NQ +GIGSGSTIV AV+R+AERV ENL + CIPTSFQA+QLI + L LSDL++ P++D+AIDGADEVD + N IKGGGGCLTQEKIVA A F++IAD K+S LG++W KG+P+EVIPMAY V Q G LRMA +KAGP+VTDNGNFI+D+ FD V W E+N I IPGVV+TGLFINM FG QDG++
Sbjct: 82 KKLAGRAAVENHVRNNQVLGIGSGSTIVHAVQRIAERVKQENLNLVCIPTSFQARQLILQYGLTLSDLDRHPEIDLAIDGADEVDADLNLIKGGGGCLTQEKIVAGYASRFIVIADFRKDSKNLGDQWHKGIPIEVIPMAYVPVSRAVSQKFGGVVELRMAVNKAGPVVTDNGNFILDWKFDRVHKWSEVNTAIKMIPGVVDTGLFINMAERVYFGMQDGSV 303
The following BLAST results are available for this feature:
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