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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047377 ID=TCONS_00047377|Name=TCONS_00047377|organism=Clytia hemisphaerica|type=transcript|length=2183bpRun BLAST on NCBI transcript from alignment at scaffold_127:66519..75514+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00047377 ID=TCONS_00047377|Name=TCONS_00047377|organism=Clytia hemisphaerica|type=transcript|length=8996bp|location=Sequence derived from alignment at scaffold_127:66519..75514+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00047377 vs. Swiss-Prot (Human)
Match: DCA11 (DDB1- and CUL4-associated factor 11 OS=Homo sapiens GN=DCAF11 PE=1 SV=1) HSP 1 Score: 399.823 bits (1026), Expect = 9.397e-130 Identity = 201/471 (42.68%), Postives = 281/471 (59.66%), Query Frame = 3
Query: 69 DLGEIISFLLVSGQVRLVRSSGIGAFEVDMPAFGFGGDSSDDETGHLNTAPLSPRGDTAPDTSNIEKSRLKN---ILLNETGYNYQYPKNITNRILKRQHGALLGRDSFNSADRLQIYSKFLPNKCDIVEKFRSKVFCGTYSNDGSVFMSACQDQHIRLYDTTNDNFKLFRDIKAKDVGWSVVDTAYSPDQNYIIYSSWSEFIHLCNVYGDHETHLALDLRPDTTQFCAFSVSFSHDSKEIVAGGSDCGLYIYERGCDQRILKITAHEEDVNSVAFADDSSNILISGSDDGLCKVWDRRALNEQTPEPVGIFAGHVNGITYVSSKNDGVHFISNSKDQSIKLWDIRHFSSEETVREARSIVANQSWDYRWPAAPRRSQRLKKSPGKDAVMTYRGHRVLHTLLRAKFSPXH---KSFPFSA----------------TIEEESRKGCGDDVPWPPCLAYFVESKVLSHLHYW 1415
DL +++++LL GQVRLV+ G + ++ G L +P D PDT +E + +K + + G K+ R+L ++ L R SF+ ++ ++ S FLPN + + K FCG YS DG +FMSACQDQ IRLYD F+ F+ IKA+DVGWSV+D A++PD N+ +YSSWS++IH+CN+YG+ +TH ALDLRPD +F FS++ S D +E++ G +D LY+++R ++R L+I +HE+DVN+VAFAD SS IL SG DD +CKVWDRR + E P+PVG AGH +GIT++ SK D + ISNSKDQ+IKLWDIR FSS E + +R Q+WDYRW P+++ R K PG ++MTYRGH VLHTL+R +FSP H + F +S + + K C DV W P V S +L W
Sbjct: 41 DLAQVLAYLLRRGQVRLVQGGGAANLQFIQALLDSEEENDRAWDGRLGDR-YNPPVDATPDTRELEFNEIKTQVELATGQLGLRRAAQKHSFPRMLHQRERGLCHRGSFSLGEQSRVISHFLPNDLGFTDSYSQKAFCGIYSKDGQIFMSACQDQTIRLYDCRYGRFRKFKSIKARDVGWSVLDVAFTPDGNHFLYSSWSDYIHICNIYGEGDTHTALDLRPDERRFAVFSIAVSSDGREVLGGANDGCLYVFDREQNRRTLQIESHEDDVNAVAFADISSQILFSGGDDAICKVWDRRTMREDDPKPVGALAGHQDGITFIDSKGDARYLISNSKDQTIKLWDIRRFSSREGMEASRQAATQQNWDYRWQQVPKKAWRKLKLPGDSSLMTYRGHGVLHTLIRCRFSPIHSTGQQFIYSGCSTGKVVVYDLLSGHIVKKLTNHKACVRDVSWHPFEEKIVSSSWDGNLRLW 510 HSP 2 Score: 130.954 bits (328), Expect = 6.249e-32 Identity = 59/118 (50.00%), Postives = 84/118 (71.19%), Query Frame = 1
Query: 1306 AQRLKKSPGKDAVMTYRGHRVLHTLLRAKFSPIFTTGQKYIYAGCASGNVVIYDVLTGEIVEKLKGVHNQCVRDVSWHPYQNTIMSSSWDFSIGRWDFHRTDVQEQKDNDDEESTTLP 1659
A R K PG ++MTYRGH VLHTL+R +FSPI +TGQ++IY+GC++G VV+YD+L+G IV+KL H CVRDVSWHP++ I+SSSWD ++ W + + + + + EE + P
Sbjct: 416 AWRKLKLPGDSSLMTYRGHGVLHTLIRCRFSPIHSTGQQFIYSGCSTGKVVVYDLLSGHIVKKLTN-HKACVRDVSWHPFEEKIVSSSWDGNLRLWQYRQAEYFQDDMPESEECASAP 532 The following BLAST results are available for this feature:
BLAST of TCONS_00047377 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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