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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047381 ID=TCONS_00047381|Name=TCONS_00047381|organism=Clytia hemisphaerica|type=transcript|length=741bp
CTCGATTTCATCCAATCAAAGAGATTTATGAAACCAGACGAAGCTCGGTT
TCATCAGCAGATCGATTTCAATTGAGCTAGATCTTACAAGAAAGTTTGCC
ACAAACAAATCTACCGGCTTTTGTACGTCAACGGAAATTGATCGCAATTC
AAACCCCAAATAATGAAGCTGATCTTTTTGACATTGCTTGTGTCCACCTT
GGAAGTGGTTTTGGTGGATGGTTATTTCAGTAACCTCAGCGAATTACATG
GAAGGAAAAGGAGCATGAGACAGttttacgaCCAATTAAGAAGAACGACC
GTCAACAACCAGCGTGACGCCCAACTCGAAAATATCTGCCGTCAAATCAC
CGTCATATGTCAACAACGCTTGCCTAGCAACAGCGATGACATCATCAAAC
AACATGGTAGCGACCAAAACAATATGGTAGAAGAAATTATGGCAAACGAT
TACAATATTGATGACGTCACTGATAACGAATTTGTCTTGGCAAAAGTTCC
AAAGTCACTGAGGAGTAAAGCTAACAACAAAAGACTTATAAAGAAACGCT
AATCGGCTCCAATCCAAAGATTCTAACACTTGACAGACATGACATCTTAA
ATTTTGAACCCTCttaaaatatcagcgtttttaCTATTTTCGTTGTTGTA
GAAAGATATTTTTCGATCATGTATTTAAACTTCTTTATCCTTTTCAATCT
AATTCAATTTGGTATTTGATGCGTGGGTCAAAATGGAGGCA Run BLAST on NCBI transcript from alignment at scaffold_127:82272..88839+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047381 ID=TCONS_00047381|Name=TCONS_00047381|organism=Clytia hemisphaerica|type=transcript|length=6568bp|location=Sequence derived from alignment at scaffold_127:82272..88839+ (Clytia hemisphaerica)
CTCGATTTCATCCAATCAAAGAGATTTATGAAACCAGACGAAGCTCGGTT
TCATCAGCAGATCGATTTCAATTGAGCTAGATCTTACAAGAAAGTTTGCC
ACAAACAAATCTACCGGCTTTTGTACGTCAACGGAAATTGATCGCAATTC
AAACCCCAAATAATGAAGCTGATCTTTTTGACATTGCTTGTGTCCACCTT
GGAAGTGGTTTTGGTGGATGGTTATTTCAGTAACCTCAGCGAATTACATG
GAAGGAAAAGGAGCATGAGACAGGTAAGCTTTTATTTTTCCAATCTTCCT
CATCGATAAACGATAAACTGAACTCATCTTTACTCCCGCAAGGTTGAAGG
CGATCTTAAAGCACTTTGCAAAAGAAAGTACGCAATCTTCAACGGAAGTA
TTATGAATACAGTACAGTATGTAATTTTAGATATGCTCTGAAAAGGAGAC
ATTATCTAAACTCAATGCAGTGTTTCTAAAGGtcttaatttgaaaataaa
cacCTTTGCACAGTATTTTTGTTAGCTAAGCCGTGTTTTACAAAGTGTTG
AGTCATCGCTCAAGTTTCAGATTAAAAGTTTAGGTCAAATTTTGTTCATA
CTTTAATAAAGAAGTCGATCTCAGAGAAATTCTAATAGACAGAGAAATCG
TTTGTTTTAGAGTGCAAGAAATCACATTTTGTGTTTTATCTTAAAAACTT
CTGATTTAATGAGGATATAATTATGGTTTAGCCTTTGAACTCCTTCATAG
GAGACCTAAGGCCTAGACAAAACATATTTTGTAAGATGGGAAAGTCTTGA
TTTGTAATATTCAACTCAATATTGCATCATCACTGTATTATTCTGTTGCA
GCTTCAAGTCAACTATTATTACTGTGATACATTGCTATTGGGTTTTCTAT
GCTCTATATCCCTCTATATCTTATTCTTCTCGCTATAGTTCTTGTCTTAT
ACTCCTTGTGTTTTCACAAGCTTTAAAAGTAGATTAGTGTCGGATTTTCA
TTGACACTTATAACTTACTTTCTTCAATTAAAATTCTGTTGACCtatttt
gtaacattttccCTGCTTCTGAATATCACTCCCTTTTTTATATTGTTGCC
TCGTGTTCGTGAGAGATAATCACCGAGTTGAAGCCACAGTTATTATGGTC
GGAAACTTTTGAAATGAGTTGTCATTTCGGTTTATGCAAGGCACCGggag
gttcaaaatttcaatcaacTACTTCTTGTGTAAATCAGAAATATGTTGAG
TATGGCTTTCGATCTGCATTGTAATGTTACCACCCCTATTTCACTGGTAN
ATAGACAGAGAAATCGTTTGTTTTAGAGTGCAAGAAATCACATTTTGTGT
TTTATCTTAAAAACTTCTGATTTAATGAGGATATAATTATGGTTTAGCCT
TTGAACTCCTTCATAGGAGACCTAAGGCCTAGACAAAACATATTTTGTAA
GATGGGAAAGTCTTGATTTGTAATATTCAACTCAATATTGCATCATCACT
GTATTATTCTGTTGCAGCTTCAAGTCAACTATTATTACTGTGATACATTG
CTATTGGGTTTTCTATGCTCTATATCCCTCTATATCTTATTCTTCTCGCT
ATAGTTCTTGTCTTATACTCCTTGTGTTTTCACAAGCTTTAAAAGTAGAT
TAGTGTCGGATTTTCATTGACACTTATAACTTACTTTCTTCAATTAAAAT
TCTGTTGACCtattttgtaacattttccCTGCTTCTGAATATCACTCCCT
TTTTTATATTGTTGCCTCGTGTTCGTGAGAGATAATCACCGAGTTGAAGC
CACAGTTATTATGGTCGGAAACTTTTGAAATGAGTTGTCATTTCGGTTTA
TGCAAGGCACCGggaggttcaaaatttcaatcaacTACTTCTTGTGTAAA
TCAGAAATATGTTGAGTATGGCTTTCGATCTGCATTGTTATGTTATGAAT
TGTACCACCCCTATTTCACCGGTACAACTTAGAACTTTCTGTTAATTTTC
CAAGGAAACGTCGGTTGCATTGAAATTTGAAcaagttagattttcatttc
tgCATGTTTGgatattggttgttttttttcaatctgtcattccaACAAAA
AATGTGAACATAACTTTTTCATAATGCTGTTACTTGTTGGTTGCGATAAG
AATCGCCCTCCTTGAAACAATGGTCCATAGTATCGACACatagataaaaa
ataaaccCTTTCCCTTTTTTTATCGTCAGTTAAGGTGAGAAGCTACGAGA
CCTCTATCATTCTATAGAAATATTTGTCGAGACCACGCCCCTGATATAAT
CAGTGTTAGAATTGTGGTTAGGGTTAGCTCCATCACGAAACATATTTCCT
TTATTTGATTATCCTGTTCCTTCCTTAgatattcttttatttattcCCGT
TTAGCCTGAGAAATTTATTATCCTAATTTACAGGATATCAATTTTTAATG
CAgcgtttttatattttattttgtgaAGAGCTACTCCTGAGAATCATTCT
AAACTGTTGGTATCATAGATCCCTTTCCCCAAATCGACATGAGTTCAGGA
CTTGTTTGACAAAGTTTCTTCCTTTTACGTGATTCCAAGGAATGATCTTA
AGGGGATAATTTTACAAgatgtaaaataaaaacaattgaatTCTTAGGCC
CTCTTAGGGATAAAAAGTTGTTCTACTTAACGAAAAATTATCCATTACTC
ACAACAAATTATGTGATCATATTCTCAATTCGAATCTTTTGGTCAAAACT
GAcccttttgtttttaaacattttttgggaTTTTGATTGAAATAAGAGGC
CGATCAGTGACCCATATTTACCAACTTTTTGAGTAAtgtaatattttcaa
agtcGTTTTTTATTCTTCCCTTCATAGCTCAGTTTATAAAAACTTCTGGA
TTTTTAGGAGGTTGAATAGCTATAGGAAATGAAAAGCTTTCTTCCAAAAT
ATACTTgaactttattttcaaaaacgcCCCTGTCTCGGTGActcgaaaaa
aataattgagATAAATGCTAATGGGGCTAATACCGGTGGGGATGAATagt
ttcttattcttttaatCTTATTTTCAACAGAAATGGAATTAATAAACATC
AAAGTTTTAATACCTCCTTAGACTGCCATGTCAGTAGGGTATCACGCGGA
AAAGGTGAGCGTGGGAGTTAGGGAAGCATAGGAAGAAAGTTGGCGGTGGC
AATTGCTGAAAGCTACTCTGTTCATCAGCAGCCTTTTACCAACTTTTTCT
CGCTCTCCTACGCACCTATTTTAACAAACACCCTCCGCCCTCAGACATTA
ACAGAATAGTTTATTAGTATACGCCTTCCTCaatgggtaaaaaaaatttt
tctagttatagtcaggcagctgaggtcacataaaaaagtgcagtagctac
ttaaacagttgttttcaatagataTGACCTTTCTGAACAAAAAATCATCA
ACCGGAAAATATTTACCGGACGCGTCCGGTAATTCGGTAaccaacataga
catattatataccaatcgacgcgttttttggcgtagattaagaaaaaggt
cagtaactatgtctgaaaatttgataataaaaagttaaaagcttccgaag
ttttgatgacgtcatatttacactttctttaagatcaattttctcgagtt
aagttagttgagaaatcatatatatccacttcaaagtcttctatatcgat
ttttgagagctttcgaatggcggtcttagatttcgattttgataagtttg
attttttgattttttttcgtctcggacaggtaaaattgacgttaccgACA
TAGAGGAAAATCGTTCtaactttttatagcaaaattttcagatatggtta
cGGACCATTTTCTTAACCTACGTTAAAAAACGCTTCGATCGGTATAGTAT
ATAATATGTTTATGTtggttctcaaaattttttcagtatGCCTATGGGCA
CGCATGACGTCACCAGGTTCTAAAATATTaccggacacgtccggtaatta
atttcaacaactccggttgatggtttctagatatctaggttgtatatttt
caattaaaagtggtttgggattgttcgcaccccgtccaatttttttgtga
cctcagctgcctgtctattaGGAAGATTAGTTTCTCACAGGTGAAAGTTT
TTAATTGCCAGTCTTTCCCACTGTGTCTATAGGGGAATGACTTGTGTCGA
AGATGTCATTATATAATATAGTGTCGTCCAAATGGTAACCTAACACAATG
TTGGTGCAAAGGTTAATCACTACTTATCAAGTTTTCACCATCATTGAGTC
AGGCCCATTCTAACGAAACTTGACCCAGTAATATTTAATATTCAACTTTG
AtgtcaacaaaaaaaatttttttcgaaggGTCACTGAGAGAGATGCTCCA
AAGCGTTCACGACTCGTTGAGATTTTATATCCGAAGTTGGTTTTTTACGA
CGAAAAACTTACAGTTTTGAAGCCGtgtataaaaaagagaaaatacaaTA
GCTACTTCAAGTTTCAACTAGTTCTAGATACCAGATTCCCTTTGAGAAAA
CAAAACACGTGCTTCTTATTTTTTGTGCGTCTTCACAGGTCAGATTATGT
GATCTTTTTCTTCAAGATAGAaacattttatgactttttcaggcaaaaat
taaaaattcatcGGGAACAGGTTTGACGATCAATCGAAGTTCTCAGANTG
Ataagtttgattttttgattttttttcgtctcggacaggtaaaattgacg
ttatcGACATAAAGGAAAATCGTTCtaactttttatagcaaaattttcag
atatggttacGGACCATTTTCTTAACCTACGTTAAAAAATTCTTCGATCG
GTATACAATATGTCTATGTtggttctcaaaattttttcagtatGCCTATG
CTTCACAGGTCAGATTATGTGATCTTTTTCTTCAAGATAGAAACATtagg
caaaaattaaaaattcatcGGGAACAGGTTTGATGATCAATCGAAGTTTT
AAGCATAGCAGAAAAATTTATTACCTAAAAAAGACAAGATCAACGAGTTC
ATTTTTATACCGAAAAAGGTTTGAACTAGGTTATATAACTTTAGGAATAT
TCAGTTTCAATAAACACACGCCACAAGGTCAAAGTGCCTCGATTCAAACA
GTACTTTGTTGTGCGTAGGACGAAAGACTTGATGCTTACGTCATCAAAAT
TACCGTTCCCCTTCTCTCTCTAAATCTTTCCTATGGTAGAAAAACTTCCT
TATTGATGAAGAGTTCGATACGAGCTTTTATTCGTGTATACGAAGAGATC
TCGATCTATATTCTAGTAATCTCTATGTTGAAGCCAGGGGTTTTCCGGCG
TATTTTTATAAATAATAATATGGAGGAGGGGGTCTTCTATTCTTctttaa
tttattttcgttCATTTGTTGATGTTATGTTGCTGGATTAGGGTTAGTTT
ACTCCTTCTTGTGTAGAGGTTGAGATCTCATTGAAAGACAATTTAAATTC
TTCCTTATTATGGTCAGAATGTTatgaacaaaagaaagaaaacgaaGTAT
AGgtcataaaaaagaaacaacAAGTCGTACAAATTATACGACAGACAAAT
TACATGCTAAGaaaaattatttggaattttagatcttgttttgaatagaa
ggaaaattagaaaaatgaaGTGTACAGTATTGTTGATAGCGATGTATTTC
TCACAAATCAATGCTTACTTTCACCAACTTAGTGGATCTTATGGTAAAAG
agaagtcaaaaaattgaaagattcaAATGTAAGATTTTCAGCCGTGTAGT
TTAGTTGTTTTTATAGCAATAGAAACCCttattatttcaaatatttgata
ttttactTTCAACATCACCATTTTTTTTGTGCCCAATTATCTAGTAATAG
TTTTCAATTTCACGGATTGATATTTTCATCCAATTTACGACCATAtgttt
tcaacaaatttttagcGCACATGTCTAATCCCGTGAATTGGAAATGGCAC
TGACACAGCATTTCTTTTgctaattgtttttattggatttctttcagttt
tacgaCCAATTAAGAAGAACGACCGTCAACAACCAGCGTGACGCCCAACT
CGAAAATATCTGCCGTCAAATCACCGTCATATGTCAACAACGCTTGCCTA
GCAACAGCGATGACATCATCAAACAACATGGTAGCGACCAAAACAATATG
GTAGAAGAAATTATGGCAAACGATTACAATATTGATGACATCACTGGNAT
ATGGTAGAAGAAATTATGGCAAATGATTACAATATTGATAACGTCACTGA
TAACGAATTTGTCTTGGCAAAAGTTCCAAAGTCACTGAGGAGTAAAGCTA
ACAACAAAAGACTTATAAAGAAACGCTAATCGGCTCCAATCCAAAGATTC
TAACACTTGACAGACATGACATCTTAAATTTTGAACCCTCttaaaatatc
agcgtttttaCTATTTTCGTTGTTGTAGAAAGATATTTTTCGATCATGTA
TTTAAACTTCTTTATCCTTTTCAATCTAATTCAATTTGGTATTTGATGCG
TGGGTCAAAATGGAGGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047381-exon-scaffold_127-1491911889:82272..82544 | TCONS_00047381-exon-scaffold_127-1491911889:82272..82544 | Clytia hemisphaerica | exon |
| TCONS_00047381-exon-scaffold_127-1510915933:82272..82544 | TCONS_00047381-exon-scaffold_127-1510915933:82272..82544 | Clytia hemisphaerica | exon |
| TCONS_00047381-exon-scaffold_127-1575043694:82272..82544 | TCONS_00047381-exon-scaffold_127-1575043694:82272..82544 | Clytia hemisphaerica | exon |
| TCONS_00047381-exon-scaffold_127-1491911889:88319..88510 | TCONS_00047381-exon-scaffold_127-1491911889:88319..88510 | Clytia hemisphaerica | exon |
| TCONS_00047381-exon-scaffold_127-1510915933:88319..88510 | TCONS_00047381-exon-scaffold_127-1510915933:88319..88510 | Clytia hemisphaerica | exon |
| TCONS_00047381-exon-scaffold_127-1575043694:88319..88510 | TCONS_00047381-exon-scaffold_127-1575043694:88319..88510 | Clytia hemisphaerica | exon |
| TCONS_00047381-exon-scaffold_127-1491911889:88564..88839 | TCONS_00047381-exon-scaffold_127-1491911889:88564..88839 | Clytia hemisphaerica | exon |
| TCONS_00047381-exon-scaffold_127-1510915933:88564..88839 | TCONS_00047381-exon-scaffold_127-1510915933:88564..88839 | Clytia hemisphaerica | exon |
| TCONS_00047381-exon-scaffold_127-1575043694:88564..88839 | TCONS_00047381-exon-scaffold_127-1575043694:88564..88839 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_127 | supercontig | scaffold_127:82272..88839 + |
Blast
The following BLAST results are available for this feature:
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