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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047382 ID=TCONS_00047382|Name=TCONS_00047382|organism=Clytia hemisphaerica|type=transcript|length=686bp
aaagaaacaacAAGTCGTACAAATTATACGACAGACAAATTACATGCTAA
Gaaaaattatttggaattttagatcttgttttgaatagaaggaaaattag
aaaaatgaaGTGTACAGTATTGTTGATAGCGATGTATTTCTCACAAATCA
ATGCTTACTTTCACCAACTTAGTGGATCTTATGGTAAAAGagaagtcaaa
aaattgaaagattcaAATttttacgaCCAATTAAGAAGAACGACCGTCAA
CAACCAGCGTGACGCCCAACTCGAAAATATCTGCCGTCAAATCACCGTCA
TATGTCAACAACGCTTGCCTAGCAACAGCGATGACATCATCAAACAACAT
GGTAGCGACCAAAACAATATGGTAGAAGAAATTATGGCAAACGATTACAA
TATTGATGACGTCACTGATAACGAATTTGTCTTGGCAAAAGTTCCAAAGT
CACTGAGGAGTAAAGCTAACAACAAAAGACTTATAAAGAAACGCTAATCG
GCTCCAATCCAAAGATTCTAACACTTGACAGACATGACATCTTAAATTTT
GAACCCTCttaaaatatcagcgtttttaCTATTTTCGTTGTTGTAGAAAG
ATATTTTTCGATCATGTATTTAAACTTCTTTATCCTTTTCAATCTAATTC
AATTTGGTATTTGATGCGTGGGTCAAAATGGAGGCA Run BLAST on NCBI protein sequence of TCONS_00047382-protein >TCONS_00047382-protein ID=TCONS_00047382-protein|Name=TCONS_00047382-protein|organism=Clytia hemisphaerica|type=polypeptide|length=130bp
MKCTVLLIAMYFSQINAYFHQLSGSYGKREVKKLKDSNFYDQLRRTTVNN
QRDAQLENICRQITVICQQRLPSNSDDIIKQHGSDQNNMVEEIMANDYNI
DDVTDNEFVLAKVPKSLRSKANNKRLIKKR Run BLAST on NCBI transcript from alignment at scaffold_127:87832..88839+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047382 ID=TCONS_00047382|Name=TCONS_00047382|organism=Clytia hemisphaerica|type=transcript|length=1008bp|location=Sequence derived from alignment at scaffold_127:87832..88839+ (Clytia hemisphaerica)
aaagaaacaacAAGTCGTACAAATTATACGACAGACAAATTACATGCTAA
Gaaaaattatttggaattttagatcttgttttgaatagaaggaaaattag
aaaaatgaaGTGTACAGTATTGTTGATAGCGATGTATTTCTCACAAATCA
ATGCTTACTTTCACCAACTTAGTGGATCTTATGGTAAAAGagaagtcaaa
aaattgaaagattcaAATGTAAGATTTTCAGCCGTGTAGTTTAGTTGTTT
TTATAGCAATAGAAACCCttattatttcaaatatttgatattttactTTC
AACATCACCATTTTTTTTGTGCCCAATTATCTAGTAATAGTTTTCAATTT
CACGGATTGATATTTTCATCCAATTTACGACCATAtgttttcaacaaatt
tttagcGCACATGTCTAATCCCGTGAATTGGAAATGGCACTGACACAGCA
TTTCTTTTgctaattgtttttattggatttctttcagttttacgaCCAAT
TAAGAAGAACGACCGTCAACAACCAGCGTGACGCCCAACTCGAAAATATC
TGCCGTCAAATCACCGTCATATGTCAACAACGCTTGCCTAGCAACAGCGA
TGACATCATCAAACAACATGGTAGCGACCAAAACAATATGGTAGAAGAAA
TTATGGCAAACGATTACAATATTGATGACATCACTGGNATATGGTAGAAG
AAATTATGGCAAATGATTACAATATTGATAACGTCACTGATAACGAATTT
GTCTTGGCAAAAGTTCCAAAGTCACTGAGGAGTAAAGCTAACAACAAAAG
ACTTATAAAGAAACGCTAATCGGCTCCAATCCAAAGATTCTAACACTTGA
CAGACATGACATCTTAAATTTTGAACCCTCttaaaatatcagcgttttta
CTATTTTCGTTGTTGTAGAAAGATATTTTTCGATCATGTATTTAAACTTC
TTTATCCTTTTCAATCTAATTCAATTTGGTATTTGATGCGTGGGTCAAAA
TGGAGGCA Coding sequence (CDS) from alignment at scaffold_127:87832..88839+ >TCONS_00047382 ID=TCONS_00047382|Name=TCONS_00047382|organism=Clytia hemisphaerica|type=CDS|length=1179bp|location=Sequence derived from alignment at scaffold_127:87832..88839+ (Clytia hemisphaerica)
atgaaGTGTACAGTATTGTTGATAGCGATGTATTTCTCACAAATCAATGC
TTACTTTCACCAACTTAGTGGATCTTATGGTAAAAGagaagtcaaaaaat
tgaaagattcaAATttttacgaCCAATTAAGAAGAACGACCGTCAACAAC
CAGCGTGACGCCCAACTCGAAAATATCTGCCGTCAAATCACCGTCATATG
TCAACAACGCTTGCCTAGCAACAGCGATGACATCATCAAACAACATGGTA
GCGACCAAAACAATATGGTAGAAGAAATTATGGCAAACGATTACAATATT
GATGACGTCACTGATAACGAATTTGTCTTGGCAAAAGTTCCAAAGTCACT
GAGGAGTAAAGCTAACAACAAAAGACTTATAAAGAAACGCTAAatgaaGT
GTACAGTATTGTTGATAGCGATGTATTTCTCACAAATCAATGCTTACTTT
CACCAACTTAGTGGATCTTATGGTAAAAGagaagtcaaaaaattgaaaga
ttcaAATttttacgaCCAATTAAGAAGAACGACCGTCAACAACCAGCGTG
ACGCCCAACTCGAAAATATCTGCCGTCAAATCACCGTCATATGTCAACAA
CGCTTGCCTAGCAACAGCGATGACATCATCAAACAACATGGTAGCGACCA
AAACAATATGGTAGAAGAAATTATGGCAAACGATTACAATATTGATGACG
TCACTGATAACGAATTTGTCTTGGCAAAAGTTCCAAAGTCACTGAGGAGT
AAAGCTAACAACAAAAGACTTATAAAGAAACGCTAAatgaaGTGTACAGT
ATTGTTGATAGCGATGTATTTCTCACAAATCAATGCTTACTTTCACCAAC
TTAGTGGATCTTATGGTAAAAGagaagtcaaaaaattgaaagattcaAAT
ttttacgaCCAATTAAGAAGAACGACCGTCAACAACCAGCGTGACGCCCA
ACTCGAAAATATCTGCCGTCAAATCACCGTCATATGTCAACAACGCTTGC
CTAGCAACAGCGATGACATCATCAAACAACATGGTAGCGACCAAAACAAT
ATGGTAGAAGAAATTATGGCAAACGATTACAATATTGATGACGTCACTGA
TAACGAATTTGTCTTGGCAAAAGTTCCAAAGTCACTGAGGAGTAAAGCTA
ACAACAAAAGACTTATAAAGAAACGCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047382-exon-scaffold_127-1491911889:87832..88049 | TCONS_00047382-exon-scaffold_127-1491911889:87832..88049 | Clytia hemisphaerica | exon |
| TCONS_00047382-exon-scaffold_127-1510915933:87832..88049 | TCONS_00047382-exon-scaffold_127-1510915933:87832..88049 | Clytia hemisphaerica | exon |
| TCONS_00047382-exon-scaffold_127-1575043694:87832..88049 | TCONS_00047382-exon-scaffold_127-1575043694:87832..88049 | Clytia hemisphaerica | exon |
| TCONS_00047382-exon-scaffold_127-1491911889:88319..88510 | TCONS_00047382-exon-scaffold_127-1491911889:88319..88510 | Clytia hemisphaerica | exon |
| TCONS_00047382-exon-scaffold_127-1510915933:88319..88510 | TCONS_00047382-exon-scaffold_127-1510915933:88319..88510 | Clytia hemisphaerica | exon |
| TCONS_00047382-exon-scaffold_127-1575043694:88319..88510 | TCONS_00047382-exon-scaffold_127-1575043694:88319..88510 | Clytia hemisphaerica | exon |
| TCONS_00047382-exon-scaffold_127-1491911889:88564..88839 | TCONS_00047382-exon-scaffold_127-1491911889:88564..88839 | Clytia hemisphaerica | exon |
| TCONS_00047382-exon-scaffold_127-1510915933:88564..88839 | TCONS_00047382-exon-scaffold_127-1510915933:88564..88839 | Clytia hemisphaerica | exon |
| TCONS_00047382-exon-scaffold_127-1575043694:88564..88839 | TCONS_00047382-exon-scaffold_127-1575043694:88564..88839 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_127 | supercontig | scaffold_127:87832..88839 + |
Blast
The following BLAST results are available for this feature:
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