|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047399 ID=TCONS_00047399|Name=TCONS_00047399|organism=Clytia hemisphaerica|type=transcript|length=1519bp
cgGGAGGTTAGGTACAGGGGATAGCAGTAAAGCAAAATGCATGACATATT
CTCATTAATTTTGTTCATATCTTTTATAAATTCAAACCTTAAGATTGATT
AAGTTATAATATTTACACAGGACGTGCTCCAAACATCGAATGTGGTTAGT
GTTTTTAGACCCAGTCAACTGAGGCTCTGGGAAATATATTCTTTATTCAA
GATGAATATGGTTAGTGTGAGGTCATACTTGCACATTGAACAAGGTTTAG
CGTCCGATCTGAACATTGATAGATGACTTATTTTTGCCCTATCAAGCATT
AGTTTTTGTACTGATTTTTCAATGTAAATTGATTCATTCTCTTtgttttt
taacagttttaacaGTGCTGTCCTTGTTCCGTCTTCGACATCCGACGATT
TAATGTTCTTTGTAAAATCTTGAGCGTTTCAGACTTGGCTGCTGGCTTGG
GTATTTCTTGTCTCTTGACAATTGACTCTCGTCAGGACCCCTCGATTATG
TTCGTTCCTTCATCAGCAAGGTCTattacataacattggtcataCATTTA
TTTATCAAGCCTCACTGGAAGATGTTGTAATTCTCGATGCCCTTGTTCCG
TTGGTGGAAGTCGAATTAATGGTATTGACTTTTCTCAGGACCCCTCGATT
ATGATGCAAGAACATAATAGGTGATGCATTCGAATTCCAAAATGCGATGA
TATGTGTCACGAAATCGAACAAATCTTTATACTTCCAGTATGTGATAAAC
CCGCCAGCGTAACAAACGCCATAAGCAGCCAGTGGCATCCAACACACCAC
AAAAATGATGAAAGATTTGATGCAGAAATTCAAGAATCTTTTCTCTGCTT
TATTGAAGGTTTTCTTCTTTGTTTCGTCTTGAGCCCCTGCTGTATCGTTT
TGTTGAGCATTTCTGAGAGTTCTTCGCTTCAACGTTCTCAAAATGACAGC
ATAAGAAATGGTGATCAGAAAAGCGGTAATGAAAATAACCAGAGGTGTTT
TGATGTACTCTTTCTCATGATCGTTGACTGCTATGTTATGCAGAATTATA
GCCAGGACGGTTAACGCCCAAATTGCAACACAGATGATGCACTTTTTGCT
CCATTCCAGCATGTTATAATACATAGGTTTCTTGACAGCCAACACTCTTT
CCACCGTCAAAGCAGCCAATGTCAGGACGGAGACATACAGAGAAATGTAA
ACCATTTTAAGCTGAAAGAAAAGTCTGTATTTGGGGTCAACTCCATGGTT
TTGTTCTGCCAGCTTCAAGATTTTGACCATTAAGACGAAGACACCAAGGA
TGATATCTGAAACAGCCAAGTTCAAAATGTAGACGGTAGATTTGACTCGA
TCCATGATTTTATGTTTGAAGATGAACCAAATCTCAATGACGTTAAGGAT
AATCATGAGACAAGCGGTCAAAGGACTTAACACCATGAATAAAAACGTCT
TGAAATCCATCCCGGTGTATGAAGATATGAGTGAAGAAAAACCTCGTTGT
TATAAGAGGACCACGTCCT Run BLAST on NCBI transcript from alignment at scaffold_127:155300..156880+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047399 ID=TCONS_00047399|Name=TCONS_00047399|organism=Clytia hemisphaerica|type=transcript|length=1581bp|location=Sequence derived from alignment at scaffold_127:155300..156880+ (Clytia hemisphaerica)
cgGGAGGTTAGGTACAGGGGATAGCAGTAAAGCAAAATGCATGACATATT
CTCATTAATTTTGTTCATATCTTTTATAAATTCAAACCTTAAGATTGATT
AAGTTATAATATTTACACAGGACGTGCTCCAAACATCGAATGTGGTTAGT
GTTTTTAGACCCAGTCAACTGAGGCTCTGGGAAATATATTCTTTATTCAA
GATGAATATGGTTAGTGTGAGGTCACATTGCACATTGAACAAGGTTTAGT
GTCCAATCTGANAATGAATATGGTTAGTGTGAGGTCATACTTGCACATTG
AACAAGGTTTAGCGTCCGATCTGAACATTGATAGATGACTTATTTTTGCC
CTATCAAGCATTAGTTTTTGTACTGATTTTTCAATGTAAATTGATTCATT
CTCTTtgttttttaacagttttaacaGTGCTGTCCTTGTTCCGTCTTCGA
CATCCGACGATTTAATGTTCTTTGTAAAATCTTGAGCGTTTCAGACTTGG
CTGCTGGCTTGGGTATTTCTTGTCTCTTGACAATTGACTCTCGTCAGGAC
CCCTCGATTATGTTCGTTCCTTCATCAGCAAGGTCTattacataacattg
gtcataCATTTATTTATCAAGCCTCACTGGAAGATGTTGTAATTCTCGAT
GCCCTTGTTCCGTTGGTGGAAGTCGAATTAATGGTATTGACTTTTCTCAG
GACCCCTCGATTATGATGCAAGAACATAATAGGTGATGCATTCGAATTCC
AAAATGCGATGATATGTGTCACGAAATCGAACAAATCTTTATACTTCCAG
TATGTGATAAACCCGCCAGCGTAACAAACGCCATAAGCAGCCAGTGGCAT
CCAACACACCACAAAAATGATGAAAGATTTGATGCAGAAATTCAAGAATC
TTTTCTCTGCTTTATTGAAGGTTTTCTTCTTTGTTTCGTCTTGAGCCCCT
GCTGTATCGTTTTGTTGAGCATTTCTGAGAGTTCTTCGCTTCAACGTTCT
CAAAATGACAGCATAAGAAATGGTGATCAGAAAAGCGGTAATGAAAATAA
CCAGAGGTGTTTTGATGTACTCTTTCTCATGATCGTTGACTGCTATGTTA
TGCAGAATTATAGCCAGGACGGTTAACGCCCAAATTGCAACACAGATGAT
GCACTTTTTGCTCCATTCCAGCATGTTATAATACATAGGTTTCTTGACAG
CCAACACTCTTTCCACCGTCAAAGCAGCCAATGTCAGGACGGAGACATAC
AGAGAAATGTAAACCATTTTAAGCTGAAAGAAAAGTCTGTATTTGGGGTC
AACTCCATGGTTTTGTTCTGCCAGCTTCAAGATTTTGACCATTAAGACGA
AGACACCAAGGATGATATCTGAAACAGCCAAGTTCAAAATGTAGACGGTA
GATTTGACTCGATCCATGATTTTATGTTTGAAGATGAACCAAATCTCAAT
GACGTTAAGGATAATCATGAGACAAGCGGTCAAAGGACTTAACACCATGA
ATAAAAACGTCTTGAAATCCATCCCGGTGTATGAAGATATGAGTGAAGAA
AAACCTCGTTGTTATAAGAGGACCACGTCCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047399-exon-scaffold_127-1491911889:155300..155520 | TCONS_00047399-exon-scaffold_127-1491911889:155300..155520 | Clytia hemisphaerica | exon |
| TCONS_00047399-exon-scaffold_127-1510915933:155300..155520 | TCONS_00047399-exon-scaffold_127-1510915933:155300..155520 | Clytia hemisphaerica | exon |
| TCONS_00047399-exon-scaffold_127-1575043694:155300..155520 | TCONS_00047399-exon-scaffold_127-1575043694:155300..155520 | Clytia hemisphaerica | exon |
| TCONS_00047399-exon-scaffold_127-1491911889:155583..156880 | TCONS_00047399-exon-scaffold_127-1491911889:155583..156880 | Clytia hemisphaerica | exon |
| TCONS_00047399-exon-scaffold_127-1510915933:155583..156880 | TCONS_00047399-exon-scaffold_127-1510915933:155583..156880 | Clytia hemisphaerica | exon |
| TCONS_00047399-exon-scaffold_127-1575043694:155583..156880 | TCONS_00047399-exon-scaffold_127-1575043694:155583..156880 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_127 | supercontig | scaffold_127:155300..156880 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
|
