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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047400 ID=TCONS_00047400|Name=TCONS_00047400|organism=Clytia hemisphaerica|type=transcript|length=355bp
cccacattgagtcccgtttgagttttttcatgtacccttattgaaatttt
caagtcgaaATTCGGCGACGCAGTAAGGCCAATACCCCCGAgagccgaaa
ataaggtccgcTTTTAAGGTTCATACATGCGTTGCGCACATTGAATTTGg
taaatcaaagatggcggcaagagATTTTGTTGATTNCTCAACAAATTTTG
ACCGGAAACGTTGAAGAAGTCACAACAATTGGAAAAGAAAAAGCTGTTAA
ACATCCTCAAGGCTTCAATGAGATGACGTTCGATATTGATTTAGTCACCA
AATCTTTCGAAGAATGCCACGAAAACCAACTTAACCTGGTGGCGTATGTG
ACAGN Run BLAST on NCBI transcript from alignment at scaffold_127:226588..230969+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047400 ID=TCONS_00047400|Name=TCONS_00047400|organism=Clytia hemisphaerica|type=transcript|length=4382bp|location=Sequence derived from alignment at scaffold_127:226588..230969+ (Clytia hemisphaerica)
cccacattgagtcccgtttgagttttttcatgtacccttattgaaatttt
caagtcgaaATTCGGCGACGCAGTAAGGCCAATACCCCCGAgagccgaaa
ataaggtccgcTTTTAAGGTTCATACATGCGTTGCGCACATTGAATTTGg
taaatcaaagatggcggcaagagATTTTGTTGATTNCTCAACAAATTTTG
ACCGGAAACGTTGAAGAAGTCACAACAATTGGAAAAGAAAAAGCTGTTAA
GtatgtttcttttttaagaGCCACTTGTTGATTTTAAATTGTTAAAGTTC
TGAACATGAGAGTGCTTCtggagcaagtgatttttaactcGTTCTAAAAA
ACCGTTTAAACATGGttaggccgatgaaatttacatatgagtttaccgtc
gtgaacttacccaaaaatagatgcggcatgatttcattattcattattca
ttattttcccaacagcaccttatccaccatttctgcTAACCATTctcagt
ctgtgccactaactcgatcgggaagattcttccggaatgggaagaacctt
cccgaacgggaagaacttactctaattttttctgcccgttttggaagatt
cttcctctttgggaagttgaaaattgactgaatctCGGCGAAGCTGTCcg
atgaccggcgaaagttgaaactttttggaggtgaaaaagcatcaaatctt
aaggtttttcaccgaaagaaaagtagactttaccgtagaaatcttgttaa
attgtgaaaaaactacgtaaacttcccaaacgggaagttCCAACCCGATC
GAGTTTTCCTTAGTTTCTCGCTTCTTCCTGATCTGGAAGTCCGTTAACCC
GTTTGGGTGTTaagttaatttcccgttcgggagaattcttcccatttcgg
aagaatcttccaattttggaagaatcttcccgatcgagttagtggcacag
actgttcATAGTGTAAAAATAGAACAATGGACTACATACGCAAGGCTTTG
GGATTAACATCAACCATGTCATATCAAAGACTTACATTCGATTAGATAGT
TGCGACTGGGGTTGCAAGACTTACTTAtaccttttcaaattcaattaaaa
aatggCTAGTGTCAAAGAAAACCAGCAGAGATGATATGTGTCCGTACCAT
ACTGCAAAGAACAcgtccctgtgtcacagacaaTGGATCGAATCTAAcag
ttcctttgttttcgagtgatatttcttttgaaattcagCGGTAAGTTTTA
GTTTCAagctgtcatttgtgtaaaaaccaggcagGTCGCTAGGccacgca
actttggtaggatttgttggcttcaaatcctaccaaggacaTTCAATTAT
AGTCCTTccggcttatacttcattgatcaCAGACCCGTTGTGACCCCAAa
ctactggaaaatttgaccaCGATTTCATCCTCGGTTGGAAAAATACTCTT
CAATGTCAGCCCTACcggaaaattgactttaattGTTTTCCcatttgaaa
attaaatcaaaagcAAATTGCCCTCCAAACCATCCCAGTGGATTTTTTGA
GCTGGGAATAAAAGAATTTCTGTGCCCAATGGGTTTTGGATAGAAATTTC
CATCCCAATTGTTGAAAAAGGTTCTACCGGGgtattgagacagggatgtc
aAAGATAAAGAATCGAGTGAGGATCGAACCTCTCAACCATGGCGTGTCTT
CGCCCTCTCAACTGACAATTAGGAGTGGAATTTTACGAGCTTCTCCACAA
ATAGAATTGGTTTTATAGAAAACGGATATGAGAAGATGAGAGAGATACCT
GTACTAGACCATAGCGGAATATCCAAATTAAATCCTGTAGGGCGTCGTTT
TTTAGCCGGACCTCTTGCAACTTGTCGCGTCCTTGATCCGAAGGCTAAAC
ATTGAGAAGTTTCAGTTGTGTATTTTTGTACTGGTGAAACGCAAAGCATA
ACGAGTAGTTTGGAGTCTCCACCGATTGTATCTTGAAGTATGTGAGTCAA
CTTGGTGTTTCGATACGGTATGTGGTTTTGGTTTTCCGATAATGCTTGAA
GGACGTCCGCTAGTGCACTCAGGCTAAAAAGcaaatgacaaaatgaaaat
agGCTTTTAACATATCGGGTACAGCATTTTCTTAGTAGTTTGTACCTTTA
GAATCTTGAATGTTTGAAGTTAAGGTTACGTTtaattacacttttttctt
gtaagaagaagTACATTAGTTTTCGAGGCTCGACTGTTCTTATTGTTTTG
TCCACTTCGAGCCTCAAACTATTCATTCGTTGAATGAGTTACCATTACTT
TAAttgggttttcaaaaaaatttattggaaATCTTTTTCTATCAATTGTA
AGACGAGTAAGATattaaaatgctagaatttCTTTGGAAGCGGACGGTAG
AGGAGAGGGGAGAGGGTCATCATAACACGAGCTAAGGAATAAATTTCCCA
AGTACTTAGGATGGGCTAAGATGAAATTTTCAGCATTCTAAAAGTATTTT
AGTCTAGTttcttactcttaggtgcctaAAACCCTCCCCCCgtttgatat
tttttcccaaCTACTTGGAACTTCTTATTTTCagcaatgtcaattgaatt
caatttctTCAATTGACATTGTTTTCAGCTATCAAATGAAGGGTCCCTTA
AATAGCCAGGCTTTAGAGATTCGAGTTTTGAAGAGTGTGCTTGCAGCTTT
CTTGtgatgaaatatttaataatattTATTCTTCATAAAGTGAATTTTAA
TCGGCTAATTAACATTTTTAGAGGAAATATCATAACTTTCTAATATtggt
gtgaaaaaaaaaaacaaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNttttgtcag
atagtcccaagatagtcccaagttattgatttgataaCCAATTACTATCA
TATAAttatatctttaagaaaaaccaaaaacattgacctaaaatcaaagc
acaaaaagaagtGCCAGCCATAAGATTGACCCCCTTATTCCCCCGCCATT
TTGTGTGCCTTCGCCCTTggtttcctcaagtaactcaTATCGTGCATTCT
GATTGTCAGAGAAAAATAAAGTGGTTTTCGCGCATGAATTGCGTGTTTTA
ATTGGGTAAGATAAACTTGTTTTCAGATTATTTCAACCCGCTGCTACagg
aaacatatttgataaaatcaaagGTATTTGATCCaatcgaaggtattcaa
tatgatcgaagGTAATCGAATTAAGTAATCGAAACGATTGAACAAatcaa
aaatggtcaaagaaaatgccataatctggagtcgagtgagtattcgatca
ccgATAAAATTTATAGGTGGTCACTGACCACCTTTGATTATTATCGATCA
TCATTGATTACTTTGATCACAATCGAATGTTCGATTGGTACCGTCTGgat
taatgaaattgaatttgtcacattatATTCAAAAGCATCACTGGCTGTCA
CTGGTCGAAatatcgaaaaaattaaaaaacgtgAGGTTTCACTACCATGA
GTTGGCTGATTTCTTCAAAATAGGCGCGTGCGCAGTTAGTTTTCATATGA
TATAACAATCGCTTTAAATTATTAATGAAGCTTTAATAAGATTGACGATt
tgaattttcataaattttatctTCTAGACATCCTCAAGGCTTCAATGAGA
TGACGTTCGATATTGATTTAGTCACCAAATCTTTCGAAGAATGCCACGAA
AACCAACTTAACCTGGTGGCGTATGTGACAGN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047400-exon-scaffold_127-1491911889:226588..226837 | TCONS_00047400-exon-scaffold_127-1491911889:226588..226837 | Clytia hemisphaerica | exon |
| TCONS_00047400-exon-scaffold_127-1510915933:226588..226837 | TCONS_00047400-exon-scaffold_127-1510915933:226588..226837 | Clytia hemisphaerica | exon |
| TCONS_00047400-exon-scaffold_127-1575043694:226588..226837 | TCONS_00047400-exon-scaffold_127-1575043694:226588..226837 | Clytia hemisphaerica | exon |
| TCONS_00047400-exon-scaffold_127-1491911889:230865..230969 | TCONS_00047400-exon-scaffold_127-1491911889:230865..230969 | Clytia hemisphaerica | exon |
| TCONS_00047400-exon-scaffold_127-1510915933:230865..230969 | TCONS_00047400-exon-scaffold_127-1510915933:230865..230969 | Clytia hemisphaerica | exon |
| TCONS_00047400-exon-scaffold_127-1575043694:230865..230969 | TCONS_00047400-exon-scaffold_127-1575043694:230865..230969 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_127 | supercontig | scaffold_127:226588..230969 + |
Blast
The following BLAST results are available for this feature:
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