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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047402 ID=TCONS_00047402|Name=TCONS_00047402|organism=Clytia hemisphaerica|type=transcript|length=6990bpRun BLAST on NCBI protein sequence of TCONS_00047402-protein >TCONS_00047402-protein ID=TCONS_00047402-protein|Name=TCONS_00047402-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1006bp MSILASKGQLMDDLLFHELWLAKQKFKEYEDETTYDGEADFPDSTDDEDRRun BLAST on NCBI transcript from alignment at scaffold_127:32259..54521- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00047402 ID=TCONS_00047402|Name=TCONS_00047402|organism=Clytia hemisphaerica|type=transcript|length=22263bp|location=Sequence derived from alignment at scaffold_127:32259..54521- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_127:32259..54521- >TCONS_00047402 ID=TCONS_00047402|Name=TCONS_00047402|organism=Clytia hemisphaerica|type=CDS|length=57399bp|location=Sequence derived from alignment at scaffold_127:32259..54521- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00047402 vs. Swiss-Prot (Human)
Match: ERAP1 (Endoplasmic reticulum aminopeptidase 1 OS=Homo sapiens GN=ERAP1 PE=1 SV=3) HSP 1 Score: 389.808 bits (1000), Expect = 6.227e-114 Identity = 250/903 (27.69%), Postives = 453/903 (50.17%), Query Frame = 3
Query: 3708 YDEIRLPTNLSPTNYVLYLSIDMAKKYYNGLVKITFDCVQQTDRIILHSSKTKNTKVEVKDG------KEPISVLDTQYNLQREMMVITLGSNLTFGNVYTLLVSFERPLRYTDNDGFYLTDYVDSNSLKHMMANTDFEPSSARRAFPCFDEPAYKATFEI-FAQHPKNDYFALSNMPVKQKIELGTDRTETHFSITPKMSTYLVGWVITSYENVQTTGPNNVKIRVFAPKGRLSETNFAEGMAPYCIQYFEDKIRINYTLPKMDLVPYSKMSAGADEVWGMIIFTESSLLYDSKIGNSNQLFRIATTVCHEISHMWFGDLVTMKWWNDLWLKESFAAYLEYLPVEKRFPDWDLPSKIYSDGTVSALSYDSSIYTHPIRTLEKDPKKMRQNYDAITYEKGAAVVSMLANYIGDDKFFEGVNSFLNKYKYGNADAHQFWRSMEKSVKT--------------------------VDVVSLMNSWVNQAGYPVILMKAKKNRSGVEVSQERFVFQNKTVTNLTKDFDTKWEVPIAIQTSDDENITRSLLTDRKGSIEVNLTNSDWFIGNYKATGFYRTYYDKENWRALLKVLEDNHETLSVVDRASLLNDVAAFSNFNFMELASSLEFTTYLSQERHPIPWGIGLGHIYIIRGLFYETNLKKC---FDAYIDKLISPVLEDLNKTPKHTHLQKLLITKLTSAAVTINKQPLTDEIVEKFLKYLVRDGNYHIPADLLLTVFSAGIKHGQAYEWDALMNRFKKAKSLMEQSLILNSLVATTDKKLLKRYLSYATNSSNIPSFMAQTVLRGLCAHHESHAMAWKYVQDNY--LALDAENSAEPILTRYLLNSCMLGKTQQDLDEAEAFVK--RYNLQKDIAVLRNIEAIKYSMELM-KEKDSVEKWLK 6293
+++IRLP + P +Y L + ++ + G K+ Q T IILHS + ++ ++ G +EP+ VL+ + ++E + + L G YT+++ + L T + GFY + Y ++A+T FEP++AR AFPCFDEPA+KA+F I + P+ + A+SNMP+ + + + E HF +T KMSTYLV ++I+ +E+V + VK+ V+A ++++ ++A A ++++ED I Y LPK DL +GA E WG+ + ES+LL+D++ +++ I TV HE++H WFG+LVTM+WWNDLWL E FA ++E++ V P+ + + A+ D+ +HP+ T ++P ++R+ +D ++Y+KGA +++ML Y+ D F G+ +L K+ Y N W SM T VDV ++MN+W Q G+P+I + + V + QE ++ ++ D W VP+ TS + + R LL K + + +W N G+Y +Y+ + W +L +L+ H +S DRASL+N+ + + + +L+ + YL E +P GL + + L + ++ + F A++ +L+ +++ T + + +++L ++L A N QP F K+ +GN +P D+ L VF+ G + + WD L ++++ + S E+S I +L T +K+ L+ L + I + +L + + + +AW++++ N+ L E + I ++ + T+ L+E + F + N + V + IE I+ ++ M K D + WL+
Sbjct: 49 WNKIRLPEYVIPVHYDLLIHANLTTLTFWGTTKVEITASQPTSTIILHSHHLQISRATLRKGAGERLSEEPLQVLE---HPRQEQIALLAPEPLLVGLPYTVVIHYAGNLSETFH-GFYKSTYRTKEGELRILASTQFEPTAARMAFPCFDEPAFKASFSIKIRREPR--HLAISNMPLVKSVTVAEGLIEDHFDVTVKMSTYLVAFIISDFESVSKITKSGVKVSVYAVPDKINQADYALDAAVTLLEFYEDYFSIPYPLPKQDLAAIPDFQSGAMENWGLTTYRESALLFDAEKSSASSKLGITMTVAHELAHQWFGNLVTMEWWNDLWLNEGFAKFMEFVSVSVTHPELKVGDYFFGK-CFDAMEVDALNSSHPVSTPVENPAQIREMFDDVSYDKGACILNMLREYLSADAFKSGIVQYLQKHSYKNTKNEDLWDSMASICPTDGVKGMDGFCSRSQHSSSSSHWHQEGVDVKTMMNTWTLQKGFPLITITVRGR--NVHMKQEHYM----KGSDGAPDTGYLWHVPLTFITSKSDMVHRFLL-KTKTDVLILPEEVEWIKFNVGMNGYYIVHYEDDGWDSLTGLLKGTHTAVSSNDRASLINNAFQLVSIGKLSIEKALDLSLYLKHETEIMPVFQGLNELIPMYKLMEKRDMNEVETQFKAFLIRLLRDLIDKQTWTDEGSVSERMLRSQLLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTLAVFAVGAQSTEG--WDFLYSKYQFSLSSTEKSQIEFALCRTQNKEKLQWLLDESFKGDKIKTQEFPQILTLIGRNPVGYPLAWQFLRKNWNKLVQKFELGSSSI-AHMVMGTTNQFSTRTRLEEVKGFFSSLKENGSQLRCVQQTIETIEENIGWMDKNFDKIRVWLQ 934 HSP 2 Score: 258.84 bits (660), Expect = 2.168e-70 Identity = 221/928 (23.81%), Postives = 415/928 (44.72%), Query Frame = 3
Query: 543 DSTKGMYNEFRLPNDLLPLHYILYMYPNLENMQYSGLVKIRFECKSKTDKIILHSAHHNFTKIAIKTINVTDI--EDILVAKSQRNLHKEMLILTLNQELVSGYSYDVYIGFHGEINKYYTNGLYSSINNGKR-----VVSTMFRPTFARRTFPCFDEPQFKTPFKLIIQHNSSLNAVSNMAEMEHIKLEDSENVECHFKESQPISTNQLSFVVSEMKFTEKTTKSGIKVRVFS--DEINNRNADFALNTTIKMLEYYGNKIQYSYPNSKLDLVPMESIPLDATSNYALIELYEPLLLFDVKTGTLFQQEKIIRTLANAIASQWFGGIISQNWWDEVYLFEGFSAFYSTKLLEDLYKDWKFDETYLYNEFQEGLRADASRYAKILAETSLDSGDYQLQAPSVA-QKSEAIVRMMSEVVGEKGFIQTVKNIFQQMQFSVVTLTTLGNTFVTFVPS--------------------------VDVVDFLHFWTSQKGFPIVTTKISDTQTQLLVVQNKFDYVKQTKW---TLWRFQIPTEFSCS-SKGVEKYVTEAHNEFFGLPASCITADKGKKFLDNNTYKCDAGGRGFFRVDYEKGDWKNLQHILKNDMKKLQPLDRADLISDLFEFSMYNYRSIGDAMLFTEYLDKETDYAPLYAGISKLQYLNDIIEDQTLKRCLKEYTSSKISSTYERTKNQNMT---SVEDKHI--EHLVIDYITNKENKLSESLIREYEIQFLKWLLSGERNLLSNYMRDVIVKVGLKYGSNYELDDVITYYRKSEDAVEKGLLLEAIGRTQKQHELL-----SSEDNVLSSEEQLKLITYSCSSYVAQSSTDY--GYKHLNKNWDKVIDLIRVSPNAVRDFMWSCFGKYSNRYDLEKFKSLFAG-KELGALSNVYKRVEEQIQHNIHFVQNQSGELRKFFQ 3167
D T +N+ RLP ++P+HY L ++ NL + + G K+ T IILHS H ++ ++ + E + V + R +E + L + L+ G Y V I + G +++ + +G Y S K + ST F PT AR FPCFDEP FK F + I+ A+SNM ++ + + + +E HF + +ST ++F++S+ + K TKSG+KV V++ D+IN AD+AL+ + +LE+Y + YP K DL + A N+ L E LLFD + + + I T+A+ +A QWFG +++ WW++++L EGF+ F + + + K + Y + + + + DA + ++ + + V+ K I+ M+ E + F + Q+ + L ++ + P+ VDV ++ WT QKGFP++T + + + Y+K + T + + +P F S S V +++ + + LP K + G G++ V YE W +L +LK + DRA LI++ F+ SI A+ + YL ET+ P++ G+++L + ++E + + ++ + I + Q T SV ++ + + L++ + N + ++ E F KW S L + + VG + + D + + Y+ S + EK + A+ RTQ + +L S + + + ++E +++T + ++ Y ++ L KNW+K++ + +++ + ++S R LE+ K F+ KE G+ ++ E I+ NI ++ ++R + Q
Sbjct: 43 DGTPFPWNKIRLPEYVIPVHYDLLIHANLTTLTFWGTTKVEITASQPTSTIILHSHHLQISRATLRKGAGERLSEEPLQVLEHPR---QEQIALLAPEPLLVGLPYTVVIHYAGNLSETF-HGFYKSTYRTKEGELRILASTQFEPTAARMAFPCFDEPAFKASFSIKIRREPRHLAISNMPLVKSVTVAEGL-IEDHFDVTVKMSTYLVAFIISDFESVSKITKSGVKVSVYAVPDKINQ--ADYALDAAVTLLEFYEDYFSIPYPLPKQDLAAIPDFQSGAMENWGLTTYRESALLFDAEKSSASSKLGITMTVAHELAHQWFGNLVTMEWWNDLWLNEGFAKFMEFVSVSVTHPELKVGD-YFFGKCFDAMEVDALNSSHPVSTPVENPAQIREMFDDVSYDKGACILNMLREYLSADAFKSGIVQYLQKHSYKNTKNEDLWDSMASICPTDGVKGMDGFCSRSQHSSSSSHWHQEGVDVKTMMNTWTLQKGFPLITITVRGRNVHM----KQEHYMKGSDGAPDTGYLWHVPLTFITSKSDMVHRFLLKTKTDVLILPEEV------------EWIKFNVGMNGYYIVHYEDDGWDSLTGLLKGTHTAVSSNDRASLINNAFQLVSIGKLSIEKALDLSLYLKHETEIMPVFQGLNELIPMYKLMEKRDMNEVETQFKAFLIRLLRDLIDKQTWTDEGSVSERMLRSQLLLLACVHN-----YQPCVQRAEGYFRKWKESNGNLSLPVDVTLAVFAVGAQSTEGW--DFLYSKYQFSLSSTEKSQIEFALCRTQNKEKLQWLLDESFKGDKIKTQEFPQILT-----LIGRNPVGYPLAWQFLRKNWNKLVQKFELGSSSIAHMVMGTTNQFSTRTRLEEVKGFFSSLKENGSQLRCVQQTIETIEENIGWMDKNFDKIRVWLQ 934 The following BLAST results are available for this feature:
BLAST of TCONS_00047402 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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