TCONS_00047411 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047411
Unique NameTCONS_00047411
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length154

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047411 ID=TCONS_00047411|Name=TCONS_00047411|organism=Clytia hemisphaerica|type=transcript|length=154bp
aaaaagaagaaaaagaacaagaaaaacaaaacaacaaacgaCGAATTAGA
AGTAGATAACAACGATAACAACACGAATGACAGATTGGAAGTagaaaata
acatgaaaagtacAAACGACAGATTGGAAGTAGTAAAGACCAAAGTTACT
TTCA
Run BLAST on NCBI

transcript from alignment at scaffold_127:8136..8289

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047411 ID=TCONS_00047411|Name=TCONS_00047411|organism=Clytia hemisphaerica|type=transcript|length=154bp|location=Sequence derived from alignment at scaffold_127:8136..8289 (Clytia hemisphaerica)
TGAAAGTAACTTTGGTCTTTACTACTTCCAATCTGTCGTTTgtacttttc
atgttattttctACTTCCAATCTGTCATTCGTGTTGTTATCGTTGTTATC
TACTTCTAATTCGtcgtttgttgttttgtttttcttgttctttttcttct
tttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030195XLOC_030195Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047411-exon-scaffold_127-1491911889:8136..8289TCONS_00047411-exon-scaffold_127-1491911889:8136..8289Clytia hemisphaericaexon
TCONS_00047411-exon-scaffold_127-1510915933:8136..8289TCONS_00047411-exon-scaffold_127-1510915933:8136..8289Clytia hemisphaericaexon
TCONS_00047411-exon-scaffold_127-1575043694:8136..8289TCONS_00047411-exon-scaffold_127-1575043694:8136..8289Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_127supercontigscaffold_127:8136..8289 .
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047411 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top