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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047412 ID=TCONS_00047412|Name=TCONS_00047412|organism=Clytia hemisphaerica|type=transcript|length=3417bp
AAATGATTTACCTCCGCTTATATAGCTGTTGTCAtaacaacaaatatttt
tatcgattttttgaTGTGACCACTcgaaaaaatggaagaaaaaatccTGA
ATTCGAGGAATCACCTGTTTTAATAAGCGAAAAATAAGACTTGCTCGATA
GCAAGTCTTATCGTAGTTTAAGAAGaattcctttatgtttaaataaatag
gtctattgaaaatggcgattcgtgtttacttttcaaattttgaaaattta
gaaaagatGTGCACATATTTTTTTGCACACGCCATTACATTCACACACAA
GAGAAAAAACAGAGTTGTGCTGAGGCGTTGAGGCGATCTTTCTTCTCAAA
GAAAAGCAACATGGAGAATTCCGAGCATTGGAAGTGGCTTCAAGCTCAAG
CATATCAACAATATCAACGACAAGTAACGTATTCAAACATTAGTTCCGGA
CAGTTAGCTGGTCCTCCAATTGCTGTTGGCCCTGCTGTTCCTGTCAGTTT
CAGACAAGCAGCTGAGCCTGATACATCGCAgtcaaatgaagaaaaaaccA
GCATTCAAACAACGAAAAAGTCAGGTTCCCGTGCAAGATGGGGGCCACAA
CACGTTGCTGTTTTACTGGAGTCTTGGAAAGAGAACCAAGATGTAATCAA
ATCCCACAACGCGTTAACCGGCTGGAAAAATGTCAAGGCATCGGTAGATG
CAGCTGGTCCTTCGAAAACCGTTGAACAAGTAAAAGGGAAAATCAAAACC
TTAATCGATGCTTACAAGAAAGCAGTCGACATAAACCGCAATCAAACTGG
AGCAGAAAGAGCGACGTGTCCATTCTANATTCACACACAAGAGAAAAAAC
AGAGTTGTGCTGAGGCGTTGAGGCGATCTTTCTTCTCAAAGAAAAGCAGG
ATGGAGAATTCCGAGCATTGGAAGTGGCTTCAAGCTCAAGCATATCAACA
ATATCAACGACAAGTAACGTATACAAACATTAGTTCCGGACAGTTAGCTG
GTCCCCCAATTGCTGTTGGCCCTGTTGTTCCTGTCAGTTTCAGACAAGCA
GCTGAGCCTGATACATCGCAgtcaaatgaagaaaaaaccAGCATTCAAAC
AACGAAAAAGTCAGGTTCCCGTGCAAGATGGGGGCCACAACACGTTGCTG
TTTTACTGGAGTCTTGGAAAGAGAACCAAGATGTAATCAAATCCCACAAC
GCGTTAACCGGCTGGAAAAATGTCAAGGCATCGGTAGATGCAGCTGGTCC
TTCGAAAACCGTTGAACAAGTAAAAGGGAAAATCAAAACCTTAATCGATG
CTTACAAGAAAGCAGTCGACATAAACCGCAATCAAACTGGAGCAGAAAGA
GCGACGTGTCCATTCTATGACGAAATCGATGAAGTTATGTCTTTGAGCCA
TACATGTAAACTCCCAGAAACGAAGGAGTTTGGTGCTGGTACCTTGAGTG
AACGAACACCACATAATTCGTCAGCAGAAACATCGGTAGAAAATTCATTG
GTTTTAGATGATTGTTTCAGTCCTCGTTCTTTTTTTGACCCTGAGGTAGA
AATGCAAGAAGACCCACATCTTATGGCTATTAATAATGCTAATGAAACTG
AGTTACATGAAAACGAGAAAACCGTTGAGCTTAACAACTCATTTGTCGAT
GAACTTCACGATGAGAGATCTAGTAAGCGAAAACGAAAGGCAGACGAtgc
aaacaaaaatgaaaaggtcGGAAAGGGAAAGAAAACCAATCTTGAAActg
ttgtaaatttgtttaaagaATCAGAGGAAAgccaacaaaaattttttagg
GAGATGAtcgaaaatcagagaaaatccgACGCTGAGGAAAAAGCACGCGA
CCAAGcattttttcttgaacttgCAAAAATTATGAAAGACAATTAGTTTc
atgtattactttttcttgtgtttattggtattttcttttgtttaagatgA
TATATAACGATTTATTAAGATGATATATAACGATTTACATGTTAAAAATA
TGCTCTCTTATGACTTCTCGGATTCTGTCACCCAAAGGGTTAACTTCGTT
ATTCTGACGCAATCGGTTTCGATGAGCAACTCTCTCTTGTTGAATCAATC
TATCTAAAAAATTATCTTCGTCTAAATATTGTTCTTGACTAATTTGACAA
ATGTTATGCAGAATAAAACAAGACAGGATAACATCACTGACATTTTCGAT
TTCGTTATCTAGTCGTTTCAAGAGACATCTCCATCTAGCCTTCAGCAATC
CAAAACCTCTCTCAACAATGCTTCTTGAACCAGATAAGCGTCGGTTAAAA
TACCTCTGTGATTGGGTTAAATTACCTGCATGTCGGTATGGTTTGATTAG
CCAATCAGATAAGGGGTAAGCACTGTCACCAATAATCAGTGGTCTTATGA
CTACCTGTTCAACAATATCTTGGGGTGCTGTCAAATATTCACCATTTTCA
CAGCGACGAAAAATCAAAGTGTTTCTCAAAACTCTTGCATCATGTAGACT
CCCTGGATACCCTGTAGCAACGGAAAGGAATTCTAAATTGCTTCCTATTA
CAGCTTGGGTATTGACTGCGTATCTCTGCTTTCTGTTGAAGTAGTCGCCT
TTGCTTTCTGTAGCcggtgtcaaaatttgaatgtgTGTTCCGTCGATAGC
ACCTAAAGCTTGTGGAATAGGACATTGCTCTATCTCCTTGAATTTCATGA
TTGCTTCGGCGGTTTCTCTTCTATTTGAGGGGAAATGAATGAAGTCTGGT
CCAAAACGGATAAGGGCACGACAAAAGTCGTTCGTTATTTTAACAGCAGT
CGATTTGCCAACAGCTAATGTTTTACTGACTGTCCGGAAAGAGTTCCCAT
TAGCCAATCTCCACAGCGCAACTGCTACACGTTTTTGTATAGGGATAGCT
TTACGAAAGTTTGTATCCCTTTTCTCCAGCGCAGGTCGAAGCAAATATAc
cagttttgaaaaagttgatccAGACATACGGAAGTCAGCTTTCCAACGTG
CCAAATAATCATCATTAAATCTGTTGTTCCAAAGTTCGTCGAACCATCTC
TCCTCTCTTTCATATGCCCAGACACTGCGCGGTTCTCTTcccatcaaaaa
catcaaagcaATGCATTTAAGTTTATTCATAGATTGAGACATGGAGTACA
TTTGGAACTGGAGATATCTCATACGTTTCTGTTGTTTTCTGTTCCgactt
ttccatttttttaacaGAGCAATGATCAATATTCTCTGTCTGAGATTCAT
GTTGAGTGATTACTATTTTTATAGTTCACGCTTTTTAtttccaatgaatt
tttatccaCACAAATTTTTAGACTTATTAGAAATGCTGATTGAAGTTTTC
CGACGCGCCGcttaaaataagcaaaaatggtGATTCCTTTTTAGCATTAG
CTAAACTTATATTTTGG Run BLAST on NCBI protein sequence of TCONS_00047412-protein >TCONS_00047412-protein ID=TCONS_00047412-protein|Name=TCONS_00047412-protein|organism=Clytia hemisphaerica|type=polypeptide|length=511bp
MENSEHWKWLQAQAYQQYQRQVTYSNISSGQLAGPPIAVGPAVPVSFRQA
AEPDTSQSNEEKTSIQTTKKSGSRARWGPQHVAVLLESWKENQDVIKSHN
ALTGWKNVKASVDAAGPSKTVEQVKGKIKTLIDAYKKAVDINRNQTGAER
ATCPFXIHTQEKKQSCAEALRRSFFSKKSRMENSEHWKWLQAQAYQQYQR
QVTYTNISSGQLAGPPIAVGPVVPVSFRQAAEPDTSQSNEEKTSIQTTKK
SGSRARWGPQHVAVLLESWKENQDVIKSHNALTGWKNVKASVDAAGPSKT
VEQVKGKIKTLIDAYKKAVDINRNQTGAERATCPFYDEIDEVMSLSHTCK
LPETKEFGAGTLSERTPHNSSAETSVENSLVLDDCFSPRSFFDPEVEMQE
DPHLMAINNANETELHENEKTVELNNSFVDELHDERSSKRKRKADDANKN
EKVGKGKKTNLETVVNLFKESEESQQKFFREMIENQRKSDAEEKARDQAF
FLELAKIMKDN Run BLAST on NCBI transcript from alignment at scaffold_127:10074..13490 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047412 ID=TCONS_00047412|Name=TCONS_00047412|organism=Clytia hemisphaerica|type=transcript|length=3417bp|location=Sequence derived from alignment at scaffold_127:10074..13490 (Clytia hemisphaerica)
CCAAAATATAAGTTTAGCTAATGCTAAAAAGGAATCaccatttttgctta
ttttaagCGGCGCGTCGGAAAACTTCAATCAGCATTTCTAATAAGTCTAA
AAATTTGTGtggataaaaattcattggaaaTAAAAAGCGTGAACTATAAA
AATAGTAATCACTCAACATGAATCTCAGACAGAGAATATTGATCATTGCT
CtgttaaaaaaatggaaaagtcGGAACAGAAAACAACAGAAACGTATGAG
ATATCTCCAGTTCCAAATGTACTCCATGTCTCAATCTATGAATAAACTTA
AATGCATtgctttgatgtttttgatgggAAGAGAACCGCGCAGTGTCTGG
GCATATGAAAGAGAGGAGAGATGGTTCGACGAACTTTGGAACAACAGATT
TAATGATGATTATTTGGCACGTTGGAAAGCTGACTTCCGTATGTCTggat
caactttttcaaaactggTATATTTGCTTCGACCTGCGCTGGAGAAAAGG
GATACAAACTTTCGTAAAGCTATCCCTATACAAAAACGTGTAGCAGTTGC
GCTGTGGAGATTGGCTAATGGGAACTCTTTCCGGACAGTCAGTAAAACAT
TAGCTGTTGGCAAATCGACTGCTGTTAAAATAACGAACGACTTTTGTCGT
GCCCTTATCCGTTTTGGACCAGACTTCATTCATTTCCCCTCAAATAGAAG
AGAAACCGCCGAAGCAATCATGAAATTCAAGGAGATAGAGCAATGTCCTA
TTCCACAAGCTTTAGGTGCTATCGACGGAACAcacattcaaattttgaca
ccgGCTACAGAAAGCAAAGGCGACTACTTCAACAGAAAGCAGAGATACGC
AGTCAATACCCAAGCTGTAATAGGAAGCAATTTAGAATTCCTTTCCGTTG
CTACAGGGTATCCAGGGAGTCTACATGATGCAAGAGTTTTGAGAAACACT
TTGATTTTTCGTCGCTGTGAAAATGGTGAATATTTGACAGCACCCCAAGA
TATTGTTGAACAGGTAGTCATAAGACCACTGATTATTGGTGACAGTGCTT
ACCCCTTATCTGATTGGCTAATCAAACCATACCGACATGCAGGTAATTTA
ACCCAATCACAGAGGTATTTTAACCGACGCTTATCTGGTTCAAGAAGCAT
TGTTGAGAGAGGTTTTGGATTGCTGAAGGCTAGATGGAGATGTCTCTTGA
AACGACTAGATAACGAAATCGAAAATGTCAGTGATGTTATCCTGTCTTGT
TTTATTCTGCATAACATTTGTCAAATTAGTCAAGAACAATATTTAGACGA
AGATAATTTTTTAGATAGATTGATTCAACAAGAGAGAGTTGCTCATCGAA
ACCGATTGCGTCAGAATAACGAAGTTAACCCTTTGGGTGACAGAATCCGA
GAAGTCATAAGAGAGCATATTTTTAACATGTAAATCGTTATATATCATCT
TAATAAATCGTTATATATcatcttaaacaaaagaaaataccaataaacac
aagaaaaagtaatacatgAAACTAATTGTCTTTCATAATTTTTGcaagtt
caagaaaaaatgCTTGGTCGCGTGCTTTTTCCTCAGCGTcggattttctc
tgattttcgaTCATCTCcctaaaaaatttttgttggcTTTCCTCTGATtc
tttaaacaaatttacaacagTTTCAAGATTGGTTTTCTTTCCCTTTCCga
ccttttcatttttgtttgcaTCGTCTGCCTTTCGTTTTCGCTTACTAGAT
CTCTCATCGTGAAGTTCATCGACAAATGAGTTGTTAAGCTCAACGGTTTT
CTCGTTTTCATGTAACTCAGTTTCATTAGCATTATTAATAGCCATAAGAT
GTGGGTCTTCTTGCATTTCTACCTCAGGGTCAAAAAAAGAACGAGGACTG
AAACAATCATCTAAAACCAATGAATTTTCTACCGATGTTTCTGCTGACGA
ATTATGTGGTGTTCGTTCACTCAAGGTACCAGCACCAAACTCCTTCGTTT
CTGGGAGTTTACATGTATGGCTCAAAGACATAACTTCATCGATTTCGTCA
TAGAATGGACACGTCGCTCTTTCTGCTCCAGTTTGATTGCGGTTTATGTC
GACTGCTTTCTTGTAAGCATCGATTAAGGTTTTGATTTTCCCTTTTACTT
GTTCAACGGTTTTCGAAGGACCAGCTGCATCTACCGATGCCTTGACATTT
TTCCAGCCGGTTAACGCGTTGTGGGATTTGATTACATCTTGGTTCTCTTT
CCAAGACTCCAGTAAAACAGCAACGTGTTGTGGCCCCCATCTTGCACGGG
AACCTGACTTTTTCGTTGTTTGAATGCTggttttttcttcatttgacTGC
GATGTATCAGGCTCAGCTGCTTGTCTGAAACTGACAGGAACAACAGGGCC
AACAGCAATTGGGGGACCAGCTAACTGTCCGGAACTAATGTTTGTATACG
TTACTTGTCGTTGATATTGTTGATATGCTTGAGCTTGAAGCCACTTCCAA
TGCTCGGAATTCTCCATCCTGCTTTTCTTTGAGAAGAAAGATCGCCTCAA
CGCCTCAGCACAACTCTGTTTTTTCTCTTGTGTGTGAATNTAGAATGGAC
ACGTCGCTCTTTCTGCTCCAGTTTGATTGCGGTTTATGTCGACTGCTTTC
TTGTAAGCATCGATTAAGGTTTTGATTTTCCCTTTTACTTGTTCAACGGT
TTTCGAAGGACCAGCTGCATCTACCGATGCCTTGACATTTTTCCAGCCGG
TTAACGCGTTGTGGGATTTGATTACATCTTGGTTCTCTTTCCAAGACTCC
AGTAAAACAGCAACGTGTTGTGGCCCCCATCTTGCACGGGAACCTGACTT
TTTCGTTGTTTGAATGCTggttttttcttcatttgacTGCGATGTATCAG
GCTCAGCTGCTTGTCTGAAACTGACAGGAACAGCAGGGCCAACAGCAATT
GGAGGACCAGCTAACTGTCCGGAACTAATGTTTGAATACGTTACTTGTCG
TTGATATTGTTGATATGCTTGAGCTTGAAGCCACTTCCAATGCTCGGAAT
TCTCCATGTTGCTTTTCTTTGAGAAGAAAGATCGCCTCAACGCCTCAGCA
CAACTCTGTTTTTTCTCTTGTGTGTGAATGTAATGGCGTGTGCAAAAAAA
TATGTGCACatcttttctaaattttcaaaatttgaaaagtaaacacgaat
cgccattttcaatagacctatttatttaaacataaaggaattCTTCTTAA
ACTACGATAAGACTTGCTATCGAGCAAGTCTTATTTTTCGCTTATTAAAA
CAGGTGATTCCTCGAATTCAggattttttcttccattttttcgAGTGGTC
ACAtcaaaaaatcgataaaaatatttgttgttaTGACAACAGCTATATAA
GCGGAGGTAAATCATTT Coding sequence (CDS) from alignment at scaffold_127:10074..13490 >TCONS_00047412 ID=TCONS_00047412|Name=TCONS_00047412|organism=Clytia hemisphaerica|type=CDS|length=1536bp|location=Sequence derived from alignment at scaffold_127:10074..13490 (Clytia hemisphaerica)
CTAATTGTCTTTCATAATTTTTGcaagttcaagaaaaaatgCTTGGTCGC
GTGCTTTTTCCTCAGCGTcggattttctctgattttcgaTCATCTCccta
aaaaatttttgttggcTTTCCTCTGATtctttaaacaaatttacaacagT
TTCAAGATTGGTTTTCTTTCCCTTTCCgaccttttcatttttgtttgcaT
CGTCTGCCTTTCGTTTTCGCTTACTAGATCTCTCATCGTGAAGTTCATCG
ACAAATGAGTTGTTAAGCTCAACGGTTTTCTCGTTTTCATGTAACTCAGT
TTCATTAGCATTATTAATAGCCATAAGATGTGGGTCTTCTTGCATTTCTA
CCTCAGGGTCAAAAAAAGAACGAGGACTGAAACAATCATCTAAAACCAAT
GAATTTTCTACCGATGTTTCTGCTGACGAATTATGTGGTGTTCGTTCACT
CAAGGTACCAGCACCAAACTCCTTCGTTTCTGGGAGTTTACATGTATGGC
TCAAAGACATAACTTCATCGATTTCGTCATAGAATGGACACGTCGCTCTT
TCTGCTCCAGTTTGATTGCGGTTTATGTCGACTGCTTTCTTGTAAGCATC
GATTAAGGTTTTGATTTTCCCTTTTACTTGTTCAACGGTTTTCGAAGGAC
CAGCTGCATCTACCGATGCCTTGACATTTTTCCAGCCGGTTAACGCGTTG
TGGGATTTGATTACATCTTGGTTCTCTTTCCAAGACTCCAGTAAAACAGC
AACGTGTTGTGGCCCCCATCTTGCACGGGAACCTGACTTTTTCGTTGTTT
GAATGCTggttttttcttcatttgacTGCGATGTATCAGGCTCAGCTGCT
TGTCTGAAACTGACAGGAACAACAGGGCCAACAGCAATTGGGGGACCAGC
TAACTGTCCGGAACTAATGTTTGTATACGTTACTTGTCGTTGATATTGTT
GATATGCTTGAGCTTGAAGCCACTTCCAATGCTCGGAATTCTCCATCCTG
CTTTTCTTTGAGAAGAAAGATCGCCTCAACGCCTCAGCACAACTCTGTTT
TTTCTCTTGTGTGTGAATNTAGAATGGACACGTCGCTCTTTCTGCTCCAG
TTTGATTGCGGTTTATGTCGACTGCTTTCTTGTAAGCATCGATTAAGGTT
TTGATTTTCCCTTTTACTTGTTCAACGGTTTTCGAAGGACCAGCTGCATC
TACCGATGCCTTGACATTTTTCCAGCCGGTTAACGCGTTGTGGGATTTGA
TTACATCTTGGTTCTCTTTCCAAGACTCCAGTAAAACAGCAACGTGTTGT
GGCCCCCATCTTGCACGGGAACCTGACTTTTTCGTTGTTTGAATGCTggt
tttttcttcatttgacTGCGATGTATCAGGCTCAGCTGCTTGTCTGAAAC
TGACAGGAACAGCAGGGCCAACAGCAATTGGAGGACCAGCTAACTGTCCG
GAACTAATGTTTGAATACGTTACTTGTCGTTGATATTGTTGATATGCTTG
AGCTTGAAGCCACTTCCAATGCTCGGAATTCTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047412-exon-scaffold_127-1491911889:10074..13490 | TCONS_00047412-exon-scaffold_127-1491911889:10074..13490 | Clytia hemisphaerica | exon |
| TCONS_00047412-exon-scaffold_127-1510915933:10074..13490 | TCONS_00047412-exon-scaffold_127-1510915933:10074..13490 | Clytia hemisphaerica | exon |
| TCONS_00047412-exon-scaffold_127-1575043694:10074..13490 | TCONS_00047412-exon-scaffold_127-1575043694:10074..13490 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_127 | supercontig | scaffold_127:10074..13490 . |
Blast
BLAST of TCONS_00047412 vs. Swiss-Prot (Human)
Match: HARB1 (Putative nuclease HARBI1 OS=Homo sapiens GN=HARBI1 PE=1 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 2.196e-21 Identity = 88/314 (28.03%), Postives = 140/314 (44.59%), Query Frame = -3
Query: 2150 YEREERWFDELWNNRFNDDYLARWKADFRMSGSTFSK-----LVYLLRPALEKRDTNFRKAIPIQKRVAVALWRLANGNSFRT-VSKTLAVGKSTAVKITNDFCRALIRFGPDFIHFPSNRRETAEAIMKFKEIEQCPIPQALGAIDGTHIQILTPATESKGDYFNRKQRYAVNTQAVIGSNLEFLSVATGYPGSLHDARVLRNTLIFRRCENGEYLTAPQDIVEQVVIRPLIIGDSAYPLSDWLIKPYRHAGNLTQSQRYFNRRLSGSRSIVERGFGLLKARWRCL---LKRLDNEIENVSDVILSCFILHNI 3064
Y R R D + D+YL MS F + LV LL L R T +AI + +V AL +G SF+T + + + +++ + + AL+ FI FP++ E + +K + +P +G +D H+ I P E Y NRK +++N V ++V T +PGSL D VL+ + + + E G + + ++GDS++ L WL+ P H RY N S + S++E+ F L +R+RCL L E S +IL+C +LHNI
Sbjct: 15 YGRGHRTLDRFKLDDVTDEYL--------MSMYGFPRQFIYYLVELLGANL-SRPTQRSRAISPETQVLAALGFYTSG-SFQTRMGDAIGISQASMSRCVANVTEALVERASQFIRFPAD--EASIQALKDEFYGLAGMPGVMGVVDCIHVAIKAPNAEDL-SYVNRKGLHSLNCLMVCDIRGTLMTVETNWPGSLQDCAVLQQSSLSSQFEAGMHKDS------------WLLGDSSFFLRTWLMTPL-HIPETPAEYRY-NMAHSATHSVIEKTFRTLCSRFRCLDGSKGALQYSPEKSSHIILACCVLHNI 301
The following BLAST results are available for this feature:
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