TCONS_00047413 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047413
Unique NameTCONS_00047413
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length577

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047413 ID=TCONS_00047413|Name=TCONS_00047413|organism=Clytia hemisphaerica|type=transcript|length=577bp
GTAAACCCGGGCCACAAATCGAGTAAGTTGACTTGAATCTGACaagttta
attttcttttttacaatAACAAATACCCCTACTCAAATATAACAGATATA
ATtgatttgtaaacaaaaaatgtatgCATCATGGCACAAAATCAAAGTAT
CGACATATAAAACACTCAACACATTCCCTTAGTTTCACCCCCTGCCCCAG
ATTTCTAGAAGGGGATCAAGGCAAAGTCGTTAGAGGTAAACTGAAATTTA
GCAATTTGATGGCATTACAAATTCGTTTAGCTGATCTGATAGACTCTAac
cattatttttcaaattgaatactGCAGACAATTCTTCATTCCAGTTTTCC
ATTTTCAACCTTGTTCAAATCTAAAAATCTATCAATCTCTCCATGACTCC
AGTTGTgaaattgttttaaaagtttGCTCACATTTAACAACTCTAAACCC
CTTTAACTCTTAGACGCTTATAAGAtctcttttctttatttttagaaaac
ctgTACAAATCAATCTTCTCATACCGGCTTCATTCCTTCCTTACATGCCG
taagttaaaaagatattttgatTTATA
Run BLAST on NCBI

transcript from alignment at scaffold_127:14194..14770

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047413 ID=TCONS_00047413|Name=TCONS_00047413|organism=Clytia hemisphaerica|type=transcript|length=577bp|location=Sequence derived from alignment at scaffold_127:14194..14770 (Clytia hemisphaerica)
TATAAatcaaaatatctttttaacttaCGGCATGTAAGGAAGGAATGAAG
CCGGTATGAGAAGATTGATTTGTAcaggttttctaaaaataaagaaaaga
gaTCTTATAAGCGTCTAAGAGTTAAAGGGGTTTAGAGTTGTTAAATGTGA
GCaaacttttaaaacaatttcACAACTGGAGTCATGGAGAGATTGATAGA
TTTTTAGATTTGAACAAGGTTGAAAATGGAAAACTGGAATGAAGAATTGT
CTGCagtattcaatttgaaaaataatggtTAGAGTCTATCAGATCAGCTA
AACGAATTTGTAATGCCATCAAATTGCTAAATTTCAGTTTACCTCTAACG
ACTTTGCCTTGATCCCCTTCTAGAAATCTGGGGCAGGGGGTGAAACTAAG
GGAATGTGTTGAGTGTTTTATATGTCGATACTTTGATTTTGTGCCATGAT
GcatacattttttgtttacaaatcaATTATATCTGTTATATTTGAGTAGG
GGTATTTGTTattgtaaaaaagaaaattaaacttGTCAGATTCAAGTCAA
CTTACTCGATTTGTGGCCCGGGTTTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030197XLOC_030197Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047413-exon-scaffold_127-1491911889:14194..14770TCONS_00047413-exon-scaffold_127-1491911889:14194..14770Clytia hemisphaericaexon
TCONS_00047413-exon-scaffold_127-1510915933:14194..14770TCONS_00047413-exon-scaffold_127-1510915933:14194..14770Clytia hemisphaericaexon
TCONS_00047413-exon-scaffold_127-1575043694:14194..14770TCONS_00047413-exon-scaffold_127-1575043694:14194..14770Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_127supercontigscaffold_127:14194..14770 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.192814	0	0	0	0.13001	0.308207	0.371839	0.232074	0	0.100629	0.586039	0.192619	0	0.199759	0	0.0587477	0	0.370896	0	0.107241	0.186423	0	0	0.100495	0.310523	0.646648	0.396579	0.28216	0.107004	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047413 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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