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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047416 ID=TCONS_00047416|Name=TCONS_00047416|organism=Clytia hemisphaerica|type=transcript|length=1436bp
cccccgggatcatTGCCTGTGAATCATGTGACACTCATCCTAAGAAGTCT
CATAAAAGAcagaaattgaaaatcaaagaaTTACTCACATCTGATGACCC
AAAAGAAATCATTCAGAATGTTTTTAGTCCATGGCCAGCTGTTTCAATAA
TTATACGAGACACTCCCAAGAACAGAAAGTAGAGTTCCAGAACTAGccct
gaatgaaaaaaattcttcaaatgaTGATGATGCAGACTCCACTGTTCATA
CAACAACACATGAAGCTGTTGACAGCGAGATACCTCGACAGATCAGACAG
TTAGTTGGAGTAGAATCATGCCCGAACCATCCTTTAATGACGAACTTGTA
GCTGTATCTGTTAGACATTGACTGTTACAGCGGTCTTTCGGCCCTCAAAG
TTGATGATGCAGTTTATGACTGGATCGGAAGAATAATCCAGTCAACTTTC
AGTTAATTCATGCTAAGAAAGTTACTGTAGCTCCAAACGAGCTCGTTGTG
TCTGGTGTCTTGAATATGACATTGTTAGATGAACCGATACATGTCATCTA
GTGCCACAGTAAGAACATTCCTTGGCTTTGAGACATATCCTGTCCGTTCA
GTCACGTCCAATATCGCTTCAAGTCACGAATTGAATGCCATGCTCAGTTC
TGGTGAATCGCATGGTAAAACGATAGAACCAGTGGGGATTAGCGAACAAG
GAATATGAGACAACAGGCTTTTGAAAGGCTTTCTGAGAAAGCAATTCATA
GGACAGTCGAAATATCGAAATTCTTTGATTCAATGATTAAATCTTACAAA
GAAGAATACCCCGAATCGTCGAGAAATATGTTTCTAATATTCCAAAATGA
AAATGGCGTGGAAAATGGGGTGATTAAATAggcttttaaagttttttttt
gaaaacctatCAAAACGATAGGATTATgggattatttttgaatttatttt
tgaatcttTCCTGTATTATACGATATCGCACACTCTATGATCTTTTTAAC
AAGCGCAAAACTGCTTTTTCATTCGagttcaatcaaaagttacagccaaa
attttcattttttaatatttttcataaaaaggtACCTTAGCATATAGTGT
TTGCTATAACAAAAGTTTGAGGGCTGAAAAGTAGgccaaaaaacatttta
aaaaggcTTAGTGACCCTaagtatttgaaaaattgaaaaaattatcgata
aattgaaaacaaattctAAGTTCTTGTCCCATTTATTGTAGCGAATCTGC
TATCACTTTTTAGTAGTTTCTTTTAGTGTACAAAGGCCTTTAGTTAAAAA
GCCGTTTTAAAGTATAGACAGGGCCTTAAAAGGTTGTAAATTAGATGAGA
TTTATTAAAACCTGTAGTTTGGTAGTtgctcaggtgagttaaggcaagtt
ccaaacatattttgcgtgacgcgcaccgcttcccat Run BLAST on NCBI transcript from alignment at scaffold_127:21123..22558 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047416 ID=TCONS_00047416|Name=TCONS_00047416|organism=Clytia hemisphaerica|type=transcript|length=1436bp|location=Sequence derived from alignment at scaffold_127:21123..22558 (Clytia hemisphaerica)
atgggaagcggtgcgcgtcacgcaaaatatgtttggaacttgccttaact
cacctgagcaACTACCAAACTACAGGTTTTAATAAATCTCATCTAATTTA
CAACCTTTTAAGGCCCTGTCTATACTTTAAAACGGCTTTTTAACTAAAGG
CCTTTGTACACTAAAAGAAACTACTAAAAAGTGATAGCAGATTCGCTACA
ATAAATGGGACAAGAACTTagaatttgttttcaatttatcgataattttt
tcaatttttcaaatacttAGGGTCACTAAgcctttttaaaatgttttttg
gcCTACTTTTCAGCCCTCAAACTTTTGTTATAGCAAACACTATATGCTAA
GGTacctttttatgaaaaatattaaaaaatgaaaattttggctgtaactt
ttgattgaactCGAATGAAAAAGCAGTTTTGCGCTTGTTAAAAAGATCAT
AGAGTGTGCGATATCGTATAATACAGGAaagattcaaaaataaattcaaa
aataatcccATAATCCTATCGTTTTGataggttttcaaaaaaaaacttta
aaagccTATTTAATCACCCCATTTTCCACGCCATTTTCATTTTGGAATAT
TAGAAACATATTTCTCGACGATTCGGGGTATTCTTCTTTGTAAGATTTAA
TCATTGAATCAAAGAATTTCGATATTTCGACTGTCCTATGAATTGCTTTC
TCAGAAAGCCTTTCAAAAGCCTGTTGTCTCATATTCCTTGTTCGCTAATC
CCCACTGGTTCTATCGTTTTACCATGCGATTCACCAGAACTGAGCATGGC
ATTCAATTCGTGACTTGAAGCGATATTGGACGTGACTGAACGGACAGGAT
ATGTCTCAAAGCCAAGGAATGTTCTTACTGTGGCACTAGATGACATGTAT
CGGTTCATCTAACAATGTCATATTCAAGACACCAGACACAACGAGCTCGT
TTGGAGCTACAGTAACTTTCTTAGCATGAATTAACTGAAAGTTGACTGGA
TTATTCTTCCGATCCAGTCATAAACTGCATCATCAACTTTGAGGGCCGAA
AGACCGCTGTAACAGTCAATGTCTAACAGATACAGCTACAAGTTCGTCAT
TAAAGGATGGTTCGGGCATGATTCTACTCCAACTAACTGTCTGATCTGTC
GAGGTATCTCGCTGTCAACAGCTTCATGTGTTGTTGTATGAACAGTGGAG
TCTGCATCATCAtcatttgaagaatttttttcattcagggCTAGTTCTGG
AACTCTACTTTCTGTTCTTGGGAGTGTCTCGTATAATTATTGAAACAGCT
GGCCATGGACTAAAAACATTCTGAATGATTTCTTTTGGGTCATCAGATGT
GAGTAAttctttgattttcaatttctgTCTTTTATGAGACTTCTTAGGAT
GAGTGTCACATGATTCACAGGCAatgatcccggggg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047416-exon-scaffold_127-1491911889:21123..22558 | TCONS_00047416-exon-scaffold_127-1491911889:21123..22558 | Clytia hemisphaerica | exon |
| TCONS_00047416-exon-scaffold_127-1510915933:21123..22558 | TCONS_00047416-exon-scaffold_127-1510915933:21123..22558 | Clytia hemisphaerica | exon |
| TCONS_00047416-exon-scaffold_127-1575043694:21123..22558 | TCONS_00047416-exon-scaffold_127-1575043694:21123..22558 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_127 | supercontig | scaffold_127:21123..22558 . |
Blast
The following BLAST results are available for this feature:
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