TCONS_00047419 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047419
Unique NameTCONS_00047419
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length519

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047419 ID=TCONS_00047419|Name=TCONS_00047419|organism=Clytia hemisphaerica|type=transcript|length=519bp
ctattcagcgcgcaatcaacactgagaaaagtaaccatgacgacaatcca
agatcttggattaaggttaaagttgatatttttattcgcgtcgttgaaaa
cacaactcaggGTAAACCCACCCctaaaactgaagattttctATTAACGG
GCACTGGCACAGGGGTGTATTAGTCTgttactaaataatgtgttcTGTTT
TACTTTTTGCTGGCTCGTCGCTTCGTTGACGTTTGTACGATCCCAGAAAT
GTTTGCCGGGAATGAGAAAGACACGCTATGTCATGGTTTACAGTTggctt
tctctaattcgatcttcaagggaccaaacgTTTTATTCAAATGAGAGAAT
GACTCGAACTACAGAGATTAATTCAAATCACTTTCCAGCTGAGGAGGTAA
TACTGTAGTCCGAGTTACAGAAATATGGGAAAAACAGAGATTCGAACTAG
AGAGAGTGGACCGCAGAGTTGACTGTATACCTGTACACAATGCATGATTT
TTATTTTCGCAGATTCGTG
Run BLAST on NCBI

transcript from alignment at scaffold_127:160893..161411

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047419 ID=TCONS_00047419|Name=TCONS_00047419|organism=Clytia hemisphaerica|type=transcript|length=519bp|location=Sequence derived from alignment at scaffold_127:160893..161411 (Clytia hemisphaerica)
CACGAATCTGCGAAAATAAAAATCATGCATTGTGTACAGGTATACAGTCA
ACTCTGCGGTCCACTCTCTCTAGTTCGAATCTCTGTTTTTCCCATATTTC
TGTAACTCGGACTACAGTATTACCTCCTCAGCTGGAAAGTGATTTGAATT
AATCTCTGTAGTTCGAGTCATTCTCTCATTTGAATAAAAcgtttggtccc
ttgaagatcgaattagagaaagccAACTGTAAACCATGACATAGCGTGTC
TTTCTCATTCCCGGCAAACATTTCTGGGATCGTACAAACGTCAACGAAGC
GACGAGCCAGCAAAAAGTAAAACAgaacacattatttagtaacAGACTAA
TACACCCCTGTGCCAGTGCCCGTTAATagaaaatcttcagttttagGGGT
GGGTTTACcctgagttgtgttttcaacgacgcgaataaaaatatcaactt
taaccttaatccaagatcttggattgtcgtcatggttacttttctcagtg
ttgattgcgcgctgaatag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030203XLOC_030203Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047419-exon-scaffold_127-1491911889:160893..161411TCONS_00047419-exon-scaffold_127-1491911889:160893..161411Clytia hemisphaericaexon
TCONS_00047419-exon-scaffold_127-1510915933:160893..161411TCONS_00047419-exon-scaffold_127-1510915933:160893..161411Clytia hemisphaericaexon
TCONS_00047419-exon-scaffold_127-1575043694:160893..161411TCONS_00047419-exon-scaffold_127-1575043694:160893..161411Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_127supercontigscaffold_127:160893..161411 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.182461	0.0553065	0.206598	0.126774	0	0.121957	0.441409	0.826483	0.67508	0.119457	0.92758	0	0.608907	1.11006	0.519882	0.349609	0.18595	0.968638	0.610277	0.636526	0.442605	1.13341	0.292022	0.122265	0.614369	0.328986	0.178808	0.334951	0.762146	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047419 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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