TCONS_00047456 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047456
Unique NameTCONS_00047456
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length613

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047456 ID=TCONS_00047456|Name=TCONS_00047456|organism=Clytia hemisphaerica|type=transcript|length=613bp
atttttttaccttgCAACAAGTTCATCAAATGTTCCATTAGTATCTTTTC
CATGTGAATTTAAGTATCTTCTCAATGAAACCTCAGACCATAATTTGAAA
GTCtcaaaagttgttttttcttgattgttttcggccattttgttgttgaa
aaattttcgcgggctttcttcaaaaaataaacaatcgaAAGTGGTTCGGG
AGTGTTGCCTTTATCTCAAATAGCAACAACAAAGACCAAGAAAGACACCa
ccattacttttttctgaataAGAGATGtatatttcttgaaaataatGCTA
GAAATAGTGAACAACTAGAAATATATGTAGAGATATAGCTTCAACTAGAC
AAATAATGCCTTTATACTGAAATATTGAGAGGTGCAAGCATTTGGgtctt
ttttcgaaaaagatGTTCTAAATTGCACAAttttttggattattttgtTC
AAACATTTGGAGGAAGACTtgttttatatcaaaataaatgaTTTCAGTGC
AAATCCTTGATTTTAAGGAAAATAGGGAAAGAGAACAACAAAAATGTGGT
TTGTTTACTTTACTGAACGCCACACCCACCGCCTATTTTTCCTACCAAGT
TCGAAAATCCGAG
Run BLAST on NCBI

transcript from alignment at scaffold_128:106803..107415

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047456 ID=TCONS_00047456|Name=TCONS_00047456|organism=Clytia hemisphaerica|type=transcript|length=613bp|location=Sequence derived from alignment at scaffold_128:106803..107415 (Clytia hemisphaerica)
CTCGGATTTTCGAACTTGGTAGGAAAAATAGGCGGTGGGTGTGGCGTTCA
GTAAAGTAAACAAACCACATTTTTGTTGTTCTCTTTCCCTATTTTCCTTA
AAATCAAGGATTTGCACTGAAAtcatttattttgatataaaacaAGTCTT
CCTCCAAATGTTTGAacaaaataatccaaaaaaTTGTGCAATTTAGAACa
tctttttcgaaaaaagacCCAAATGCTTGCACCTCTCAATATTTCAGTAT
AAAGGCATTATTTGTCTAGTTGAAGCTATATCTCTACATATATTTCTAGT
TGTTCACTATTTCTAGCattattttcaagaaatataCATCTCTtattcag
aaaaaagtaatggtGGTGTCTTTCTTGGTCTTTGTTGTTGCTATTTGAGA
TAAAGGCAACACTCCCGAACCACTTtcgattgtttattttttgaagaaag
cccgcgaaaatttttcaacaacaaaatggccgaaaacaatcaagaaaaaa
caacttttgaGACTTTCAAATTATGGTCTGAGGTTTCATTGAGAAGATAC
TTAAATTCACATGGAAAAGATACTAATGGAACATTTGATGAACTTGTTGc
aaggtaaaaaaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030224XLOC_030224Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047456-exon-scaffold_128-1491911889:106803..107415TCONS_00047456-exon-scaffold_128-1491911889:106803..107415Clytia hemisphaericaexon
TCONS_00047456-exon-scaffold_128-1510915933:106803..107415TCONS_00047456-exon-scaffold_128-1510915933:106803..107415Clytia hemisphaericaexon
TCONS_00047456-exon-scaffold_128-1575043694:106803..107415TCONS_00047456-exon-scaffold_128-1575043694:106803..107415Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_128supercontigscaffold_128:106803..107415 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.175632	0.428173	0.706981	0.389107	1.33322	0.769042	1.38808	1.70938	0.530996	0.650173	0	0.477617	0.842632	0.363917	0.154837	0.108964	0.263693	0.202708	0	0.101749	0.528022	0.512072	0.452937	0.382597	0.377137	0.673172	0.72193	0.385525	0.703147	0.928973
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047456 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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