TCONS_00047477 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047477
Unique NameTCONS_00047477
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length575

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047477 ID=TCONS_00047477|Name=TCONS_00047477|organism=Clytia hemisphaerica|type=transcript|length=575bp
CAACCAACTTCAACGTTTAATTCGAACAGGTAGAACAGGTCATTGGATAA
ACCACGGCAAAGAACACTGTATTattggcAAAAAGGGAAGACCTGATCCG
AACTTGTTTAATTATGGTCTTGATTGTGATGTCCTTGTATCGGAGGTACG
AGACACAAGTCACAAACCAGATGAAGTTTACGGGCTAATAGAACGTCTTG
CGCCTGGTCAAAGAAAGATAGAAATGTTTGGCCGTATGCATAATGTTCAA
CCGAATTGGATAACACTAGGTAATCAGTTAGCAGGTGTCAATTTGGTGGA
GCCTGACGTCATCAAACGGTTCCAGGAACGGTATCCAAGTGGGTCGTGTC
TGCCACAAGCCAAGAAACCTGATGCACCAAAAACAGAATAAATTATTCGT
AATGCTGTCATCGAAAAGCTTCAACATGATGATTCTCCATGAATTTATTC
ATGAAGCGTCAACACGTTGTGTTGTTATCTGAAAGACGGCTTACGAAGAA
AACGTTACATGCCCAAAAGTAACATTTCAGAGTTTCTAAATCAATACCAT
TTTCAGCGAGAAGTGGAGCCATCTT
Run BLAST on NCBI

transcript from alignment at scaffold_13:59020..62458+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047477 ID=TCONS_00047477|Name=TCONS_00047477|organism=Clytia hemisphaerica|type=transcript|length=3439bp|location=Sequence derived from alignment at scaffold_13:59020..62458+ (Clytia hemisphaerica)
CAACCAACTTCAACGTTTAATTCGAACAGGTAGAACAGGTCATTGGATAA
ACCACGGCAAAGAACACTGTATTGTAAGTCCTTTGAGTCTGACCCACTCA
TTGCACACTTTTTGGGTTTAACACGTTCACTGCCGAGTCTTGAAATCGAA
ATTTCAACCTCATGGAATTTCTTCGAAAGTTTGACATTCAGAGGCTCCTT
TGGCCTGAGCTTTGCTTCAACTGCCTTTGAATTGTATACCAATCGACACA
GAATTTTACGTAGATTTGGTGCTCTTTGAAGCACTGCCTCGTAGTTGGCA
GCAAACGTGTTAAGCCTataaagtattttaaaatttttaagatatACTTA
TCTTAAATTCCTCATAAATTGCCTTATAAATTGTCTATAGACAGCTGGAA
ATTGGATCTGATTATTTTatatctttaaatttttaagattggcAAAAAGG
GAAGACCTGATCCGAACTTGTTTAATTATGGTCTTGATTGTGATGTCCTT
GTATCGGAGGTAAGGTTTGTGATATTCTTATGTATGAGCAGACATAGCAT
GGTAGAGCTTCCGGCTCTGGTGCACAAGGTTGTATGCTCGACCTCCAACC
AGTGTCACACCAAAGATAAGATTCACTAGACGGTGCTCAGCAATTAAATA
GAAAGCTCGAATATAAGTGGAGAAATTGAGGGAAAGGTGTGCTGCTGAAT
CTCTAATAAACGTATTTTTGCGAAAACCAAGCCAAGAATAAAGACGGGTA
GGGTAGAATTAACGTACAGACTGGAAATTAGGGCTTGGATTAAAAAGGGT
ACAAGATAAATACATctctttctcacagacccggtagaattttttaGCCA
TTGGGGAAGTAAAAATATTGGCCTGATACTCGATGGGGGTTTGGtattct
cattttttatttatggctggggatttgaattccattgttttcaagtcaga
aaactcAGTGGGGATTGAAAAAGTAGCACAATATTTTACTGTGAGGGTTT
GTTTAAAGtcattttcagcggggacaaaaattggagtataatttccCAGT
AGAGACGATATTCGACGATTTTTCCAGTGAGAGGGGGTCTGTGAGTGTAT
AAATCAAACGTTCAGAGGAAAGTTAAAATGATTTTCATTGCATTTCTTAA
ACACTTTCATTACATGAATTATCTTGTTCAACGTGAATTCGAATTCTTTC
CAGTTCTTTTCTTGATAAAAGGCATAGATGTGACTAGCTACCAAACTGGG
GAAGATTCTTTTAACAGGAAACAAGACTTTAACCATAGGAGAGAAAATCT
GATATTTGCAGATTTTttcgttacaaaaatactttaaaaaaagtgtcaaa
TAGACTTTGAATTTTTGTATTGAATAACCCACATAACAGTGGAGTCATAT
TGTCGTACCATTTTCTTAAGTACTTTTTGTGGTCATGTGTTTATTTAACA
GTGTTTGTATTACTGTCAAGgccatttttcttttacttcCTTCTTTGTGT
AATGTGTTGCTCGGACGTCCATATAAACCTGACATTTAAAGATGGTTGAC
ATATTTACCTGTACCCTTCCTCAAATCTTTATGCTAAACTCTTTTCCAAA
GTCAATATATGCTAACTTGAAATCTCTTTAAGTAGGTTCTTACGTGAAAG
TTTCTATTTCAAGATTACAATTTTATAAAAGGCCAATTTATCTTCCTTCA
GGTCTCTGGTTGTACTCTAAGGTACTTGATTAAGGAGTTCAGTAGTAGGA
TTTGTAAACCACCAATATTCACCCTCCTTTCTGTTAATAAGGCACCTTCT
TTTACAAGCTtacaccatagtataagaaagccgcggctggaatgataaca
tctgattttatgttgttctatctctgtcgtatttgatgactatttgttga
tcaagaaatcagtaatgtagcatcttcaATGGTAAATTTTtatggtttgt
cgttaatacttacttctcagtgcgttttaggcATTAATGATATactcttg
ataatacacttgcattataaaatcattgtaaaggaaagatcaacaataag
aaatctaaacaagcacaaaatggctgggctgaaagaactcaaaaattaat
aaagtgcctcaaatgccttcacaataatTCAGTGAAATTATTtcagaaat
caatgaaaatgtacatcaagataatactgtgaaagtttcaagccagcacc
ttcaaaatttatcattcaaactaccAGGagagttgtcatcttgaatatag
ttcttataatctcaattttggtgaaaaactattgtttccacaaaatactc
ctaaaatatgtccaaaattagttcaagtgttctattgggtacagattcaa
agatatctagcaaaaactttttgtgaaggaaaaaaCTATCTACCGATAAC
AAACTGatcatcttgatgttcttataaagctcggagacagagatggaaca
gcaattaactgaaaagagaatgcggtacatattccagccgcggctttctt
atactatgcttacACTTTATTCATTTGTTGTGTTCATCATTTTAGGTACG
AGACACAAGTCACAAACCAGATGAAGTTTACGGGCTAATAGAACGTCTTG
CGCCTGGTCAAAGAAAGATAGGTAAGAAACCAGGCAATTCTTTTCCTCCG
AATTAATCATAGACCATGTacaggaaatattttttctgaatttgagGCCC
TTTTTTCAGTTTATATAGATTTAATTCACTACAAGCAAactaaaaattgc
taaaaaaaaactaaaaacataCTGCAATTCAGCAGAGTTGAAGGCTGACT
CAATACTTTTATATTTAAGCTcaataacaaaaaatattttttgctataCT
ATTTTGATATGCAGTACACGATGTTGATAGAAATCCACGCCTTTATTTTT
CGCTTTAGAAATGTTTGGCCGTATGCATAATGTTCAACCGAATTGGTAAG
TGATCCAGTTGACTGTATAAAACACTTTTGCCTGAGGTTTTCTTGTCTTT
TAATGAATGGATGAATAAATGACATAATTAATTGGTATAATTATCAGGGG
AACTGAGTTTGGATATGTCATGATTTGTATgaaaatcaattcaaattttc
atcacATTCCTCTTTTCCACAGGATAACACTAGGTAATCAGTTAGCAGGT
GTCAATTTGGTGGAGCCTGACGTCATCAAACGGTTCCAGGAACGGTATCC
AAGTGGGTCGTGTCTGCCACAAGCCAAGAAACCTGATGCACCAAAAACAG
AATAAATTATTCGTAATGCTGTCATCGAAAAGCTTCAACATGATGATTCT
CCATGAATTTATTCATGAAGCGTCAACACGTTGTGTTGTTATCTGAAAGA
CGGCTTACGAAGAAAACGTTACATGCCCAAAAGTAACATTTCAGAGTTTC
TAAATCAATACCATTTTCAGCGAGAAGTGGAGCCATCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030241XLOC_030241Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047477-exon-scaffold_13-1491911889:59020..59092TCONS_00047477-exon-scaffold_13-1491911889:59020..59092Clytia hemisphaericaexon
TCONS_00047477-exon-scaffold_13-1510915933:59020..59092TCONS_00047477-exon-scaffold_13-1510915933:59020..59092Clytia hemisphaericaexon
TCONS_00047477-exon-scaffold_13-1575043694:59020..59092TCONS_00047477-exon-scaffold_13-1575043694:59020..59092Clytia hemisphaericaexon
TCONS_00047477-exon-scaffold_13-1491911889:59457..59528TCONS_00047477-exon-scaffold_13-1491911889:59457..59528Clytia hemisphaericaexon
TCONS_00047477-exon-scaffold_13-1510915933:59457..59528TCONS_00047477-exon-scaffold_13-1510915933:59457..59528Clytia hemisphaericaexon
TCONS_00047477-exon-scaffold_13-1575043694:59457..59528TCONS_00047477-exon-scaffold_13-1575043694:59457..59528Clytia hemisphaericaexon
TCONS_00047477-exon-scaffold_13-1491911889:61565..61640TCONS_00047477-exon-scaffold_13-1491911889:61565..61640Clytia hemisphaericaexon
TCONS_00047477-exon-scaffold_13-1510915933:61565..61640TCONS_00047477-exon-scaffold_13-1510915933:61565..61640Clytia hemisphaericaexon
TCONS_00047477-exon-scaffold_13-1575043694:61565..61640TCONS_00047477-exon-scaffold_13-1575043694:61565..61640Clytia hemisphaericaexon
TCONS_00047477-exon-scaffold_13-1491911889:61928..61964TCONS_00047477-exon-scaffold_13-1491911889:61928..61964Clytia hemisphaericaexon
TCONS_00047477-exon-scaffold_13-1510915933:61928..61964TCONS_00047477-exon-scaffold_13-1510915933:61928..61964Clytia hemisphaericaexon
TCONS_00047477-exon-scaffold_13-1575043694:61928..61964TCONS_00047477-exon-scaffold_13-1575043694:61928..61964Clytia hemisphaericaexon
TCONS_00047477-exon-scaffold_13-1491911889:62142..62458TCONS_00047477-exon-scaffold_13-1491911889:62142..62458Clytia hemisphaericaexon
TCONS_00047477-exon-scaffold_13-1510915933:62142..62458TCONS_00047477-exon-scaffold_13-1510915933:62142..62458Clytia hemisphaericaexon
TCONS_00047477-exon-scaffold_13-1575043694:62142..62458TCONS_00047477-exon-scaffold_13-1575043694:62142..62458Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:59020..62458 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.119725	3.61289	2.73207	0	0	0	1.22178	3.38573	5.15799	2.55826	3.74294	4.80817	4.3183	3.56183	0.783242	0.388117	0.641734	0.289185	2.93512	4.32784	1.18785	7.01467	7.97691	0	0	0.907077	2.44021	6.57697	3.39425
Blast
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BLAST of TCONS_00047477 vs. Swiss-Prot (Human)
Match: MTA70 (N6-adenosine-methyltransferase 70 kDa subunit OS=Homo sapiens GN=METTL3 PE=1 SV=2)

HSP 1 Score: 198.364 bits (503), Expect = 1.343e-59
Identity = 84/114 (73.68%), Postives = 102/114 (89.47%), Query Frame = 2 
Query:    2 NQLQRLIRTGRTGHWINHGKEHCIIGKKGRPDPNLFNYGLDCDVLVSEVRDTSHKPDEVYGLIERLAPGQRKIEMFGRMHNVQPNWITLGNQLAGVNLVEPDVIKRFQERYPSG 343
            NQLQR+IRTGRTGHW+NHGKEHC++G KG  +P  FN GLDCDV+V+EVR TSHKPDE+YG+IERL+PG RKIE+FGR HNVQPNWITLGNQL G++L++PDV+ RF++RYP G
Sbjct:  461 NQLQRIIRTGRTGHWLNHGKEHCLVGVKG--NPQGFNQGLDCDVIVAEVRSTSHKPDEIYGMIERLSPGTRKIELFGRPHNVQPNWITLGNQLDGIHLLDPDVVARFKQRYPDG 572
The following BLAST results are available for this feature:
BLAST of TCONS_00047477 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MTA701.343e-5973.68N6-adenosine-methyltransferase 70 kDa subunit OS=H... [more]
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