TCONS_00047512 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047512
Unique NameTCONS_00047512
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1551

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047512 ID=TCONS_00047512|Name=TCONS_00047512|organism=Clytia hemisphaerica|type=transcript|length=1551bp
TATTTTTTAGCATAGAAATAACCACCACGTTTAAATGCCTAAATTATCAT
AGAATTCaaagaactagaactagaaatATCAACATAACTCTTTGAATTAT
CTTGCACTAGATTTATCGAAGCCGAGAGATTTGCACTTAGAAAGATGTAC
AGATCGTGTGGTGTTGACATGGAGTCAAATTGCTGAACCGCTTGATGGTT
ATTGTGTCAATTATCGTTCGTTGAGTGATAGGGTATGGCACTCATGTTGC
ATCCCTTCCCACGACCGTATGTTCTCTTACGATTTCCACGGAAAGACAGT
TCGATTCGAGCAACGTATCTTGGAGGACAAATGGAGGATGGACGGCAGAA
GATACAAATGCTCACCACCCGTTCCAGGGAAATTACAGTTCCGCGTTGCT
GCATACAACAAATACGGAACAGGTTATTACAAACAAACTGTATATGTTGG
GTGCGGTGTGGAGCCGGAAACAGCCACGACAGCTCAAAGATCGGAAAAGA
AGAACTTCTCATCTTTCACACTTACCATCGTGTTGGCCTCATCTTTTGTG
CTTTTATCTTTCGCTTTGATCGCATGGCGTGTCAAAAAGCGTCTCGCGGA
CCGCGTAGAGATTAATACAGTGGCGGCGCGTATTTTCGAAAGAGATCAAC
CTTTGAATGATGACGAAGatgaggaggaggaggaggaggaggtgaACGAA
CAATGGAATTTGATGAAACCTTTGAGATTACCTTCTTATAGAGAAACATT
AGAACGCTTCAACACTGACCCTCCATCTTATGAAGAACCGGTGGAAAATG
AAGTACCGTCATATTCGGAGCAACAAATTGCAGAACAATCTGTTTGAATT
CTTCACAGACCTACATCGAAGGATGATGATAATGATGTTTGGATTTGCTT
AAAGCTATCTACCAGACCCCATTACTCGAACAGTTGGAGAATCAGACTAC
TCTAACTTAATCGAAcaggtttcaaaaatttgtgaGGAGTTCGAGAAGTT
CGATTGAAGAAAGGTTCGAAAAGCTCAATTGAAGAAGAGTTGGAGAAGTT
TGACCAAGGAAAAGTCCAGGATAGTTCGTTCGAACTTTACTCGAACTTTT
AACATACCTAGAGTTCGAGTAAAGTTTGAGTAAAATAGTGGTTCGGAAAG
TTCCAGTGATGGGGTCCGGTATCTAGGCATATTATGTCACAACACATGTG
TTTTGAACTGCTTAGGCCGTGATACTATAGTAGAGCTGTCCACCAATATT
GGTTATTCAATCGGCCATAGCTGAGATTGTGGTCGATGTTTACATATCAT
GGCAATATTCGATTCTAAACTTTAAAACGACAACTGAAATTTGGCTTGGA
AAAATCAAGTATGATGAGTAGATGGAGTAAGACTTGAAATAGTAAGACTT
GAAATAGTAAGTCATTGCACTCtcagttttaaaggtttttaatGAGACCT
TTTGGAGTCTCATATCATTCGAGACTTTACAAGTCTGAATCTATACCTTT
AAGGTTCCAGTACAACACCTTAGCGGGTCTGGTTTACCAGCTTGGACAAT
C
Run BLAST on NCBI

protein sequence of TCONS_00047512-protein

>TCONS_00047512-protein ID=TCONS_00047512-protein|Name=TCONS_00047512-protein|organism=Clytia hemisphaerica|type=polypeptide|length=192bp
MFSYDFHGKTVRFEQRILEDKWRMDGRRYKCSPPVPGKLQFRVAAYNKYG
TGYYKQTVYVGCGVEPETATTAQRSEKKNFSSFTLTIVLASSFVLLSFAL
IAWRVKKRLADRVEINTVAARIFERDQPLNDDEDEEEEEEEVNEQWNLMK
PLRLPSYRETLERFNTDPPSYEEPVENEVPSYSEQQIAEQSV
Run BLAST on NCBI

transcript from alignment at scaffold_130:17948..19775-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047512 ID=TCONS_00047512|Name=TCONS_00047512|organism=Clytia hemisphaerica|type=transcript|length=1828bp|location=Sequence derived from alignment at scaffold_130:17948..19775- (Clytia hemisphaerica)
TATTTTTTAGCATAGAAATAACCACCACGTTTAAATGCCTAAATTATCAT
AGAATTCAAAGAACTAGAACTAGAAATATCAACATAACTCTTTGAATTAT
CTTGCACTAGATTTATCGAAGCCGAGAGATTTGCACTTAGAAAGATGTAC
AGATCGTGTGGTGTTGACATGGAGTCAAATTGCTGAACCGCTTGATGGTT
ATTGTGTCAATTATCGTTCGTTGAGTGATAGGGTATGGCACTCATGTTGC
ATCCCTTCCCACGACCGTATGTTCTCTTACGGTATGTCGTCTCCCCTCTT
CCTTCTAATGAACCAAATTACACATACATTGTCAGTAAATGTTTTTCCCT
GGTTTCGTAAGGGTCGTAGAACTCTTTCACTACACAAGAACTCTCACTTA
CCCTGACTTACTTAATGGATTTTCTCAATCACTCACTGAAGTGGTTCCTT
GATTATGTATTGTAGATTTCCACGGAAAGACAGTTCGATTCGAGCAACGT
ATCTTGGAGGACAAATGGAGGATGGACGGCAGAAGATACAAATGCTCACC
ACCCGTTCCAGGGAAATTACAGTTCCGCGTTGCTGCATACAACAAATACG
GAACAGGTTATTACAAACAAACTGTATATGTTGGGTGCGGTGTGGAGCCG
GAAACAGGTAAGAAAGTGCTCCTCTGTAACGCACAATGAGTGCATTGGAA
GGGTTTAAATGGTGGATTGGTTGCGTGAACTTTTATCTCTTTTCTTTCAG
CCACGACAGCTCAAAGATCGGAAAAGAAGAACTTCTCATCTTTCACACTT
ACCATCGTGTTGGCCTCATCTTTTGTGCTTTTATCTTTCGCTTTGATCGC
ATGGCGTGTCAAAAAGCGTCTCGCGGACCGCGTAGAGATTAATACAGTGG
CGGCGCGTATTTTCGAAAGAGATCAACCTTTGAATGATGACGAAGATGAG
GAGGAGGAGGAGGAGGAGGTGAACGAACAATGGAATTTGATGAAACCTTT
GAGATTACCTTCTTATAGAGAAACATTAGAACGCTTCAACACTGACCCTC
CATCTTATGAAGAACCGGTGGAAAATGAAGTACCGTCATATTCGGAGCAA
CAAATTGCAGAACAATCTGTTTGAATTCTTCACAGACCTACATCGAAGGA
TGATGATAATGATGTTTGGATTTGCTTAAAGCTATCTACCAGACCCCATT
ACTCGAACAGTTGGAGAATCAGACTACTCTAACTTAATCGAACAGGTTTC
AAAAATTTGTGAGGAGTTCGAGAAGTTCGATTGAAGAAAGGTTCGAAAAG
CTCAATTGAAGAAGAGTTGGAGAAGTTTGACCAAGGAAAAGTCCAGGATA
GTTCGTTCGAACTTTACTCGAACTTTTAACATACCTAGAGTTCGAGTAAA
GTTTGAGTAAAATAGTGGTTCGGAAAGTTCCAGTGATGGGGTCCGGTATC
TAGGCATATTATGTCACAACACATGTGTTTTGAACTGCTTAGGCCGTGAT
ACTATAGTAGAGCTGTCCACCAATATTGGTTATTCAATCGGCCATAGCTG
AGATTGTGGTCGATGTTTACATATCATGGCAATATTCGATTCTAAACTTT
AAAACGACAACTGAAATTTGGCTTGGAAAAATCAAGTATGATGAGTAGAT
GGAGTAAGACTTGAAATAGTAAGACTTGAAATAGTAAGTCATTGCACTCT
CAGTTTTAAAGGTTTTTAATGAGACCTTTTGGAGTCTCATATCATTCGAG
ACTTTACAAGTCTGAATCTATACCTTTAAGGTTCCAGTACAACACCTTAG
CGGGTCTGGTTTACCAGCTTGGACAATC

Coding sequence (CDS) from alignment at scaffold_130:17948..19775-

>TCONS_00047512 ID=TCONS_00047512|Name=TCONS_00047512|organism=Clytia hemisphaerica|type=CDS|length=1737bp|location=Sequence derived from alignment at scaffold_130:17948..19775- (Clytia hemisphaerica)
CCACGACAGCTCAAAGATCGGAAAAGAAGAACTTCTCATCTTTCACACTT
ACCATCGTGTTGGCCTCATCTTTTGTGCTTTTATCTTTCGCTTTGATCGC
ATGGCGTGTCAAAAAGCGTCTCGCGGACCGCGTAGAGATTAATACAGTGG
CGGCGCGTATTTTCGAAAGAGATCAACCTTTGAATGATGACGAAGATGAG
GAGGAGGAGGAGGAGGAGGTGAACGAACAATGGAATTTGATGAAACCTTT
GAGATTACCTTCTTATAGAGAAACATTAGAACGCTTCAACACTGACCCTC
CATCTTATGAAGAACCGGTGGAAAATGAAGTACCGTCATATTCGGAGCAA
CAAATTGCAGAACAATCTGTTTGAATTTCCACGGAAAGACAGTTCGATTC
GAGCAACGTATCTTGGAGGACAAATGGAGGATGGACGGCAGAAGATACAA
ATGCTCACCACCCGTTCCAGGGAAATTACAGTTCCGCGTTGCTGCATACA
ACAAATACGGAACAGGTTATTACAAACAAACTGTATATGTTGGGTGCGGT
GTGGAGCCGGAAACAGATGTTCTCTTACGCCACGACAGCTCAAAGATCGG
AAAAGAAGAACTTCTCATCTTTCACACTTACCATCGTGTTGGCCTCATCT
TTTGTGCTTTTATCTTTCGCTTTGATCGCATGGCGTGTCAAAAAGCGTCT
CGCGGACCGCGTAGAGATTAATACAGTGGCGGCGCGTATTTTCGAAAGAG
ATCAACCTTTGAATGATGACGAAGATGAGGAGGAGGAGGAGGAGGAGGTG
AACGAACAATGGAATTTGATGAAACCTTTGAGATTACCTTCTTATAGAGA
AACATTAGAACGCTTCAACACTGACCCTCCATCTTATGAAGAACCGGTGG
AAAATGAAGTACCGTCATATTCGGAGCAACAAATTGCAGAACAATCTGTT
TGAATTTCCACGGAAAGACAGTTCGATTCGAGCAACGTATCTTGGAGGAC
AAATGGAGGATGGACGGCAGAAGATACAAATGCTCACCACCCGTTCCAGG
GAAATTACAGTTCCGCGTTGCTGCATACAACAAATACGGAACAGGTTATT
ACAAACAAACTGTATATGTTGGGTGCGGTGTGGAGCCGGAAACAGATGTT
CTCTTACGCCACGACAGCTCAAAGATCGGAAAAGAAGAACTTCTCATCTT
TCACACTTACCATCGTGTTGGCCTCATCTTTTGTGCTTTTATCTTTCGCT
TTGATCGCATGGCGTGTCAAAAAGCGTCTCGCGGACCGCGTAGAGATTAA
TACAGTGGCGGCGCGTATTTTCGAAAGAGATCAACCTTTGAATGATGACG
AAGATGAGGAGGAGGAGGAGGAGGAGGTGAACGAACAATGGAATTTGATG
AAACCTTTGAGATTACCTTCTTATAGAGAAACATTAGAACGCTTCAACAC
TGACCCTCCATCTTATGAAGAACCGGTGGAAAATGAAGTACCGTCATATT
CGGAGCAACAAATTGCAGAACAATCTGTTTGAATTTCCACGGAAAGACAG
TTCGATTCGAGCAACGTATCTTGGAGGACAAATGGAGGATGGACGGCAGA
AGATACAAATGCTCACCACCCGTTCCAGGGAAATTACAGTTCCGCGTTGC
TGCATACAACAAATACGGAACAGGTTATTACAAACAAACTGTATATGTTG
GGTGCGGTGTGGAGCCGGAAACAGATGTTCTCTTACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030266XLOC_030266Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047512-proteinTCONS_00047512-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047512-exon-scaffold_130-1575043694:19495..19775TCONS_00047512-exon-scaffold_130-1575043694:19495..19775Clytia hemisphaericaexon
TCONS_00047512-exon-scaffold_130-1575043694:19119..19310TCONS_00047512-exon-scaffold_130-1575043694:19119..19310Clytia hemisphaericaexon
TCONS_00047512-exon-scaffold_130-1575043694:17948..19025TCONS_00047512-exon-scaffold_130-1575043694:17948..19025Clytia hemisphaericaexon
TCONS_00047512-exon-scaffold_130-1510915933:19495..19775TCONS_00047512-exon-scaffold_130-1510915933:19495..19775Clytia hemisphaericaexon
TCONS_00047512-exon-scaffold_130-1510915933:19119..19310TCONS_00047512-exon-scaffold_130-1510915933:19119..19310Clytia hemisphaericaexon
TCONS_00047512-exon-scaffold_130-1510915933:17948..19025TCONS_00047512-exon-scaffold_130-1510915933:17948..19025Clytia hemisphaericaexon
TCONS_00047512-exon-scaffold_130-1491911889:19495..19775TCONS_00047512-exon-scaffold_130-1491911889:19495..19775Clytia hemisphaericaexon
TCONS_00047512-exon-scaffold_130-1491911889:19119..19310TCONS_00047512-exon-scaffold_130-1491911889:19119..19310Clytia hemisphaericaexon
TCONS_00047512-exon-scaffold_130-1491911889:17948..19025TCONS_00047512-exon-scaffold_130-1491911889:17948..19025Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_130supercontigscaffold_130:17948..19775 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.35285	1.85614	0.98778	0.878535	9.73274	8.39524	11.488	11.9959	12.1635	12.6106	11.1688	10.7224	11.9734	12.6171	11.2736	12.0983	10.7961	13.8321	11.6907	11.263	11.7322	11.5573	9.91187	9.59004	13.7377	13.2992	5.83619	3.94603	5.31098	3.85649
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047512 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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