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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047514 ID=TCONS_00047514|Name=TCONS_00047514|organism=Clytia hemisphaerica|type=transcript|length=2098bp
TAGTCATTCTGAAAACAAGGACATGAGTACCTATGATAAAGCAAAGGGAC
AATGTACCATCATACCAGGACTTTTTTGAGTTGTTTGTTTGTCTATCTCA
CTGGATTGTCAGCAGATTACACGAAACCAGTCACAAACTTCCGACAGTTG
ATAAATGGAGACAAACATGGATTTTGGGGTAATTTCATCTTCGATTCTAA
CAATACCATACAACTTTCTTGGGATCATGTCCATTTTTACCACGGTTATG
AGCTTTATTGGTGGACGAACATTAATGGACTGAAGGGTCAGATCTATATC
GATCCCACAGTGTTGGAACCATCGCGTCTGTACGAAGTTGAATATTACTC
GTTTACTGAATACTCAAACAATTATGTTTACTACTTCAAACTCCAAGGAT
GGCTGTATGGTCGGGGCTATGGTGAAATGTCTAAAGTattgaaagcctta
aaaccGCCAACTGTTTCCTGTCGAGAATATCCGTCAACTTTATAATGGCG
ATAAAACTGCCATCCATATCGATTGGAAGCAACAACTATCACGCCTCACT
TATGCTATCGATTTTTGTCCTAAATACCGCTGTAACTCTGATGAAAATAC
GAAGTCAAAAATTGTTCATGCAGTTAATGAAACCTTTATTGGTGGTTTGG
AACATATTTTATATAAGATTACTGTGTATCAAGTAATCCAATATAACCAG
TCACTTGGATTATCTAGTGATCAAATTGCaaagataaatcttttttcaaa
gattcagGCAAGCTCTGTCATCTTGAAAGCTGGATTCATCGGTCAGCCGT
CTGCCGTGCAAGGTCTTGAGCAGTTGAAGAGTCAAAGTAATCAATCCATA
ACGTTGAGATTCAACATGCTCACTCGTGGGCAAAATGGAGATGCAAAAGT
GTTAGGTTATAAAGTGAAGGTTTATTTGAATTCTACTTTATTGAGATCGG
GTGATTGCCAACGTGATCATGAAACACACTTTTGGGTGTATTGTTTTGTG
GGTGATGTACCGCCATCAACTACTCTTGATGTTTCTGTTTATGGATACAA
CCGCTTCGGGGATGGTAATCGAAGACTTCTTATAGCTCAAGTTAACCAAT
CTATTTTTACCGATCTTCCCAAACAAGTCAAAGATTTGATAGTGTCCAGC
AACACTAAAGACGAGACTTCAATTAAATTGCAATGGGAGAAGATCACTAT
CCACGACGCTGGCTTGAATGTCGGTTTCTTCCACATCAAGAGTTACAAAG
TAGTTTTATCGTCTAACGAAAACAACTGGGAAAAGGAGATTGGTATTAGG
AACTGGTATATTTTAAACAGTACTCCTAAAGGTAAGCATCACATGTCGAA
TGCAAAATCTTCAACACACATAAGGTCTACCGTccccccccccagaaatt
tGGGGGTACCTCAAAAAGAAAGtgttaaaaaagttttcttaaatttaggg
gctacctgatatgtttgggggtacctgcaTTTTCACAAGTGTTTTTTATG
AAGTCATGGTGGCCAGCGACCCTTGAATTCCCTGAAATACCCTTCCTTGA
GGTGCAAGATTTATActcttgaaacccttgaaatgccaaattttgtggcc
attttccgccattttcactttcagaaatacaaaatttttcgTATTGCGTG
GGATACAAACATAAGTGAATTAAATGAGAAGGCATACTTTTAGAACCCCT
GAGATTCAAGGGGGTATTCTGACAGGTATAGAACGATTGGTACGGGTCCC
GGTGGGGGGGGGACACTCGTTCTGAAATGGACTATACGTTCGAcccaaaa
ttgactttcaaaatcggactcttacagtgcagaaatAAGCTATGAAATTA
AACCGACCTTACAGTGCATCATTCTCTTCACCAGACCTTTTCATTGGAGC
AcctttctttaaaaaaggtaacttttcatttgaaaattaagTAATTAAAG
GTAATTTGCTACCCTCACAGTCCAGGTAAAGGTAAAAGATACTGTTACAG
TGCAGCACTGGTAAAAACCCCTACGGTGCACTAGCTGAACCTTGAAAAAC
CGAACCTTAATGCCGCACGTCTGGTaagtcatttaccttgagtacccc Run BLAST on NCBI transcript from alignment at scaffold_130:21244..24375- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047514 ID=TCONS_00047514|Name=TCONS_00047514|organism=Clytia hemisphaerica|type=transcript|length=3132bp|location=Sequence derived from alignment at scaffold_130:21244..24375- (Clytia hemisphaerica)
TAGTCATTCTGAAAACAAGGACATGAGTACCTATGATAAAGCAAAGGGAC
AATGTACCATCATACCAGGACTTTTTTGAGTTGTTTGTTTGTCTATCTCA
CTGGATTGTCAGCAGGTAACATTTCTATTTAACTTTTTAATTTTCCTTTA
TTCATTCTATGATTTCCTTCCCTTAAAATTCAAAAAATAATTAGGTAAAA
GGGTAAAATAATTGTTCTGTTTTAACTAGGCAGAGATTTTTATAATTGGA
ATTCTCAAAGCCCCTGCCTTCATGACCAAAGTATAGTTTTCCGATAGGGT
GAAATCTTTCTCTCTTTAAAAATAAAGGACAATCATTTGCCGATTTTTCC
AGTAAGTAGAGCGTGACCTGGGAAGAAAAAGAAGGTTTAAAAAGCCTTTA
TGCTAAAATTATGATTACTGAAAATGAGAAATGTATAAAGGTCAACTTGG
AAGAGTGGAACTTTGAGAAAAAATCAGGCAATGGATTTGAATTTAGAAGG
ATAAAGCACTCTTCTTGCTATATCTGATGTCTTATTCCCTTTCTTTGTTA
GAAAAACACCTCTGAATGACCTGAATGAAATTATACAGTTTCGAATGCAA
AAAGATATCACGAGAGGCATTGTGCCCATTTCGTTTCGTTTCGTTTCAGA
TTACACGAAACCAGTCACAAACTTCCGACAGTTGATAAATGGAGACAAAC
ATGGATTTTGGGGTAATTTCATCTTCGATTCTAACAATACCATACAACTT
TCTTGGGATCATGTCCATTTTTACCACGGTTATGAGCTTTATTGGTGGAC
GAACATTAATGGACTGAAGGGTCAGATCTATATCGATCCCACAGTGTTGG
AACCATCGCGTCTGTACGAAGTTGAATATTACTCGTTTACTGAATACTCA
AACAATTATGTTTACTACTTCAAACTCCAAGGATGGCTGTATGGTCGGGG
CTATGGTGAAATGTCTAAAGTATTGAAAGCCTTAAAACCGTATGTTGGTA
AGACTACCATGATTTTAGATGATTCGATTCACTAATTCTAATGTTACTAG
TAGGCATTTTTCCTTGGGCATTAATATGTATGTATCCTCCTTTTTTGTTA
CAGCTGGTCAAGTGTTTTTTTATATGAACTTCCATTTTCGGTATTCTTTC
AAAAAAAAACATGTATTGAATATCTGCCATGATTGAAAGGAGAACATTTT
TTAGCGAGCACAAGTTCATACTTACCACCTTTCAATAATAAAGGTGCGTC
AAGAAGCCAGTATTATATTGTATAATTCGGTCAACATTTAGGCCAACTGT
TTCCTGTCGAGAATATCCGTCAACTTTATAATGGCGATAAAACTGCCATC
CATATCGATTGGAAGCAACAACTATCACGCCTCACTTATGCTATCGATTT
TTGTCCTAAATACCGCTGTAACTCTGATGAAAATACGAAGTCAAAAATTG
TTCATGCAGTTAATGAAACCTTTATTGGTGGTTTGGAACATATTTTATAT
AAGATTACTGTGTATCAAGTAATCCAATATAACCAGTCACTTGGATTATC
TAGTGATCAAATTGCAAAGATAAATCTTTTTTCAAAGATTCAGGCAAGCT
CTGTCATCTTGAAAGCTGGATTCATCGGTCAGCCGTCTGCCGTGCAAGGT
CTTGAGCAGTTGAAGAGTCAAAGTAATCAATCCATAACGTTGAGATTCAA
CATGCTCACTCGTGGGCAAAATGGAGATGCAAAAGTGTTAGGTTATAAAG
TGAAGGTTTATTTGAATTCTACTTTATTGAGATCGGGTGATTGCCAACGT
GATCATGAAACACACTTTTGGGTGTATTGTTTTGTGGGTGATGTACCGCC
ATCAACTACTCTTGATGTTTCTGTTTATGGATACAACCGCTTCGGGGATG
GTAATCGAAGACTTCTTATAGCTCAAGTTAACCAATCTATTTTTACCGGT
AAATTTCTTACACATACGTATTATACCACTAATATTTATAACACCTTTTC
GAAAACCCTCATTTATTGTTTGGTTTCATGATGTTTTTTCGAAAATGTTC
TGCTCAATAACCTTCTGTCAAACACCAAGAAATTAACTTTTTCTTCTAAT
AAAATGGAGAATACTCCGACTATCGATATGTAACTTCTATTCACAGATCT
TCCCAAACAAGTCAAAGATTTGATAGTGTCCAGCAACACTAAAGACGAGA
CTTCAATTAAATTGCAATGGGAGAAGATCACTATCCACGACGCTGGCTTG
AATGTCGGTTTCTTCCACATCAAGAGTTACAAAGTAGTTTTATCGTCTAA
CGAAAACAACTGGGAAAAGGAGATTGGTATTAGGAACTGGTATATTTTAA
ACAGTACTCCTAAAGGTAAGCATCACATGTCGAATGCAAAATCTTCAACA
CACATAAGGTCTACCGTCCCCCCCCCCAGAAATTTGGGGGTACCTCAAAA
AGAAAGTGTTAAAAAAGTTTTCTTAAATTTAGGGGCTACCTGATATGTTT
GGGGGTACCTGCATTTTCACAAGTGTTTTTTATGAAGTCATGGTGGCCAG
CGACCCTTGAATTCCCTGAAATACCCTTCCTTGAGGTGCAAGATTTATAC
TCTTGAAACCCTTGAAATGCCAAATTTTGTGGCCATTTTCCGCCATTTTC
ACTTTCAGAAATACAAAATTTTTCGTATTGCGTGGGATACAAACATAAGT
GAATTAAATGAGAAGGCATACTTTTAGAACCCCTGAGATTCAAGGGGGTA
TTCTGACAGGTATAGAACGATTGGTACGGGTCCCGGTGGGGGGGGGACAC
TCGTTCTGAAATGGACTATACGTTCGACCCAAAATTGACTTTCAAAATCG
GACTCTTACAGTGCAGAAATAAGCTATGAAATTAAACCGACCTTACAGTG
CATCATTCTCTTCACCAGACCTTTTCATTGGAGCACCTTTCTTTAAAAAA
GGTAACTTTTCATTTGAAAATTAAGTAATTAAAGGTAATTTGCTACCCTC
ACAGTCCAGGTAAAGGTAAAAGATACTGTTACAGTGCAGCACTGGTAAAA
ACCCCTACGGTGCACTAGCTGAACCTTGAAAAACCGAACCTTAATGCCGC
ACGTCTGGTAAGTCATTTACCTTGAGTACCCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047514-exon-scaffold_130-1575043694:24261..24375 | TCONS_00047514-exon-scaffold_130-1575043694:24261..24375 | Clytia hemisphaerica | exon |
| TCONS_00047514-exon-scaffold_130-1575043694:23387..23726 | TCONS_00047514-exon-scaffold_130-1575043694:23387..23726 | Clytia hemisphaerica | exon |
| TCONS_00047514-exon-scaffold_130-1575043694:22428..23084 | TCONS_00047514-exon-scaffold_130-1575043694:22428..23084 | Clytia hemisphaerica | exon |
| TCONS_00047514-exon-scaffold_130-1575043694:21244..22229 | TCONS_00047514-exon-scaffold_130-1575043694:21244..22229 | Clytia hemisphaerica | exon |
| TCONS_00047514-exon-scaffold_130-1510915933:24261..24375 | TCONS_00047514-exon-scaffold_130-1510915933:24261..24375 | Clytia hemisphaerica | exon |
| TCONS_00047514-exon-scaffold_130-1510915933:23387..23726 | TCONS_00047514-exon-scaffold_130-1510915933:23387..23726 | Clytia hemisphaerica | exon |
| TCONS_00047514-exon-scaffold_130-1510915933:22428..23084 | TCONS_00047514-exon-scaffold_130-1510915933:22428..23084 | Clytia hemisphaerica | exon |
| TCONS_00047514-exon-scaffold_130-1510915933:21244..22229 | TCONS_00047514-exon-scaffold_130-1510915933:21244..22229 | Clytia hemisphaerica | exon |
| TCONS_00047514-exon-scaffold_130-1491911889:24261..24375 | TCONS_00047514-exon-scaffold_130-1491911889:24261..24375 | Clytia hemisphaerica | exon |
| TCONS_00047514-exon-scaffold_130-1491911889:23387..23726 | TCONS_00047514-exon-scaffold_130-1491911889:23387..23726 | Clytia hemisphaerica | exon |
| TCONS_00047514-exon-scaffold_130-1491911889:22428..23084 | TCONS_00047514-exon-scaffold_130-1491911889:22428..23084 | Clytia hemisphaerica | exon |
| TCONS_00047514-exon-scaffold_130-1491911889:21244..22229 | TCONS_00047514-exon-scaffold_130-1491911889:21244..22229 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_130 | supercontig | scaffold_130:21244..24375 - |
Blast
The following BLAST results are available for this feature:
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