TCONS_00047577 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047577
Unique NameTCONS_00047577
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length820

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047577 ID=TCONS_00047577|Name=TCONS_00047577|organism=Clytia hemisphaerica|type=transcript|length=820bp
ATACCAAGGAGATGGATACACCAAAACAATCACTGTTTATAAAGAGAGAG
TCAGTGGTGCGATTCTATCGAAGCCACCGTTTTATCTGCTCTTGTTCGCA
GTTGCATTTATATTCATTATGTGAACAAAGCAAGTATTGGTTTTCAGAAG
AAGAAATAAAGCGATATAGCCACAAACGGAAGTAAAAAAGGACTTGGTAT
CGCAGTCAGGAATATTTCCAACAGAGCTTCGATTAAGAATCTCGATAGAG
GCTTTAGATAGAGGCTttgttaaaaaacttttaatgaatTCCATTGGTTT
TTGTGTTTGTGACCCATAATGATGAAACAAACTGGAAAATAACAGATGTT
AATCATTTTTCCAGAATCGCTGGTGGGAGTGTGCTATACACCATTTAACT
GTTAAATTAGTGAAGTCATTCAAAGCGTACAACCACATCTTGGACTCTGC
TGTTGGGTTTTGTTAGCTTACCGGCGGGTTGCCACACTCTTCTGCAGTCA
ATTCATCaattcaaacattcaaaagATTCCGAAAGTGAAAACTGtctgat
tttttcttaaaatttattttgaattcaaTAAAAAGAGTTACACTAACAAT
TTTGTATACGTATCTTTCTACTGATTTTTTTTAGCTTGGatttgaaaaat
agaatttcatcCATCATGGGGCAGGGGTGTTTTATTCGTCATTTAAAGCT
GGCAACCGTCTTTCCCTGAAGAATCTCATATCATCTCTATAATAACACCC
CTGAATCTTGatataaacatttttcaaattacttGGAGCTGGACGGCACA
TTTAAAGCGAGCAAAACgag
Run BLAST on NCBI

transcript from alignment at scaffold_132:117063..118583-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047577 ID=TCONS_00047577|Name=TCONS_00047577|organism=Clytia hemisphaerica|type=transcript|length=1521bp|location=Sequence derived from alignment at scaffold_132:117063..118583- (Clytia hemisphaerica)
ATACCAAGGAGATGGATACACCAAAACAATCACTGTTTATAAAGAGAGAG
TCAGTGGTGGTAAGTGTTTATCTAACCCTGTGTTATATTTTAGAGAGTTT
ATGTATGTCACGTTTTTCTTTATTTATAAGACAATCCTAATTTTTTGAAG
CCTTTGGATTTTCTTAATTCTATGAGTTTTAAGCCTAAAAATGTTTTTAT
TTTCACCTTTATGTGAATATTTTTGTCCATTTTCCTTAAAAATTGAGTGT
TATGGAGTCTGCAAAGCCTTAAAATATTTATAACTTGTTCTTAATAATTT
AGCTATCGAAGCCAAATTAATCCTTATTAACCGAGGACGACGGTTAATTA
GCACTTTTATAGTCCTCGATTTTGCGGGTCAAAACACTGCGTGTTATTAA
AAATCGCTTCAGTCACCCATGGTCCTCAAAAGTGTAAATACATAAACTCG
CTATTCACTGGAACGTCGAGACCCCCATTCCTTATACAAAAAAATTGTCA
AAAAAAGCTTTAAGGCTGAACTTTCTAACGGGAAAAACTGTATGATTTTA
AGAGTCCCCAATTATTGAGCTTAAATTAGAATATCCCACCTTAAACGACA
TTTAGCAGTTTAAACGACATTTAGCTTTCATTGGATCCGTACCAAGACAG
CTGTCTGGATCCAGATATTCAACTAAAAATAAGATCTGTAGCAGTTTTGA
AAGTGGAGGATTTTTCACGGTATTAAACTATACTTATTTATCTTTTAATT
CTCTTTACAGCGATTCTATCGAAGCCACCGTTTTATCTGCTCTTGTTCGC
AGTTGCATTTATATTCATTATGTGAACAAAGCAAGTATTGGTTTTCAGAA
GAAGAAATAAAGCGATATAGCCACAAACGGAAGTAAAAAAGGACTTGGTA
TCGCAGTCAGGAATATTTCCAACAGAGCTTCGATTAAGAATCTCGATAGA
GGCTTTAGATAGAGGCTTTGTTAAAAAACTTTTAATGAATTCCATTGGTT
TTTGTGTTTGTGACCCATAATGATGAAACAAACTGGAAAATAACAGATGT
TAATCATTTTTCCAGAATCGCTGGTGGGAGTGTGCTATACACCATTTAAC
TGTTAAATTAGTGAAGTCATTCAAAGCGTACAACCACATCTTGGACTCTG
CTGTTGGGTTTTGTTAGCTTACCGGCGGGTTGCCACACTCTTCTGCAGTC
AATTCATCAATTCAAACATTCAAAAGATTCCGAAAGTGAAAACTGTCTGA
TTTTTTCTTAAAATTTATTTTGAATTCAATAAAAAGAGTTACACTAACAA
TTTTGTATACGTATCTTTCTACTGATTTTTTTTAGCTTGGATTTGAAAAA
TAGAATTTCATCCATCATGGGGCAGGGGTGTTTTATTCGTCATTTAAAGC
TGGCAACCGTCTTTCCCTGAAGAATCTCATATCATCTCTATAATAACACC
CCTGAATCTTGATATAAACATTTTTCAAATTACTTGGAGCTGGACGGCAC
ATTTAAAGCGAGCAAAACGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030307XLOC_030307Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047577-exon-scaffold_132-1575043694:118525..118583TCONS_00047577-exon-scaffold_132-1575043694:118525..118583Clytia hemisphaericaexon
TCONS_00047577-exon-scaffold_132-1575043694:117063..117823TCONS_00047577-exon-scaffold_132-1575043694:117063..117823Clytia hemisphaericaexon
TCONS_00047577-exon-scaffold_132-1510915933:118525..118583TCONS_00047577-exon-scaffold_132-1510915933:118525..118583Clytia hemisphaericaexon
TCONS_00047577-exon-scaffold_132-1510915933:117063..117823TCONS_00047577-exon-scaffold_132-1510915933:117063..117823Clytia hemisphaericaexon
TCONS_00047577-exon-scaffold_132-1491911889:118525..118583TCONS_00047577-exon-scaffold_132-1491911889:118525..118583Clytia hemisphaericaexon
TCONS_00047577-exon-scaffold_132-1491911889:117063..117823TCONS_00047577-exon-scaffold_132-1491911889:117063..117823Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_132supercontigscaffold_132:117063..118583 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.731159	0.963137	0.942306	0.577283	0	0	0	0.337765	0.280101	0.151673	0	0	0.628945	1.77863	0.702027	1.50747	3.15114	1.59216	2.71864	1.29996	3.3965	2.67319	2.64057	1.6677	0.413671	1.32509	5.04008	2.45506	1.58245	1.64766
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047577 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top