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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047599 ID=TCONS_00047599|Name=TCONS_00047599|organism=Clytia hemisphaerica|type=transcript|length=909bp
ctggcatgtaagaggaagccctagaacaaaccttcgcctagttcgaaaac
ctaggacaaagaccaaaacaacgtcttctcttctgtccatatcttctgac
GAATGAAAGAGTTAAGGTCAGTAACTTCATTTTATCCCCCGGTGAAAAGG
TTCTATGTAAACATCCTTACAACACAGTCCGATGGCAAGTTGATGAGGGA
AAACATCAAATTGACAATGACAAGATTCTGAAGGTTAAAGATAAGGAGGT
CTCTTTTGCTGAAGCTGGAAAGGAGTTCTACATGGCAAACTGTGGTGAAG
TAAACAGTAGACAAATTTTATTTGACATTATTCACGAACCAAAATACACA
GAGGAAGAAGTGAAGGACTTACTATCAAAAGCCATTTATCCACCCAATGT
TGGCACTGAACTGTTGTTTGAAAATAGATATTGTCGTGTTTGGGATTTCT
ATTTGGAACCGGATGGGGGAGACCCTTTAAAGAATGCTCATCATCATGTT
TTGGattatgtttttgtttatgtgGCTTGTGGAAGATTATTAGGGTACCA
TCCTGATGGCAGACCAGGATTGTTTGATTCTGTTATGGAGAACAATGAAG
TCGTCTGGGAAGAAATTCCTTCCACAGCTGCTGAGAATGTAGAATATGCC
CATGCTGGTAAAAACGGGTATAAAGATAAACCCATGCGAGAATATCTGCT
AGAATTGAAATGAAATGTAGATGGATGTATAAAGgataaaattaacattt
ttttggtttttatagCGCTTCTGTCCTGAGAAATTGAAGTTGATTTACTG
GTGAGAAGAGGAAATATCTGATGGAATTGAAATAAAGTTGTAATTGGGCT
GATAGGAAAGAGGGATCAACTTGTTGAATGTCTAGAAAGTCATCCTTTAT
GGGAAGTTG Run BLAST on NCBI transcript from alignment at scaffold_132:186948..188754- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047599 ID=TCONS_00047599|Name=TCONS_00047599|organism=Clytia hemisphaerica|type=transcript|length=1807bp|location=Sequence derived from alignment at scaffold_132:186948..188754- (Clytia hemisphaerica)
CTGGCATGTAAGAGGAAGCCCTAGAACAAACCTTCGCCTAGTTCGAAAAC
CTAGGACAAAGACCAAAACAACGTCTTCTCTTCTGTCCATATCTTCTGAC
GAATGAAAGAGTTAAGGTCAGTAACTTCATTTTATCCCCCGGTGAAAAGG
TTCTATGTAAACATCCTTACAACACAGTCCGATGGCAAGTTGATGAGGGA
AAACATCAAATTGACAATGACAAGATTCTGAAGGTTAAAGATAAGGAGGT
ATTATTGGGAATTTGTTTGTCTTTTAACTATTTATAATAACTTTTAAAAT
CAGTTAATTTGGCAAAAATAAACCTTACTTGGTTCAAATCATGCATGTTG
ATTGTTGTGTTTTTTATCCCTTTGCCAAAGGGTATAATTTGTGTATCCTG
TTCATTTANGCATGTTGTGTTTTTTATCCCTTCGCCAAAGGGTAGAATTT
GTGTATCCTGTTCATTTATTGACCCAGCATTTGACAAATTTGGAACCACC
TTAAATCTCCTTTGTCGTCCTTTGCTACTTTTCATGCCTTTTTAGTGTCC
AGTTCTTGGACACTGCCCCAATCCCCGAATTTGTGTTTAAAATAGTGTTT
TTAACAGTGAAAAACTGCATTTTTTTAGCCATTACAATATCGCTTTTTAC
CATAGAATTATTCTTTATTCAGGTCTCTTTTGCTGAAGCTGGAAAGGAGT
TCTACATGGCAAACTGTGGTGAAGTAAACAGTAGACAAATTTTATTTGAC
ATTATTCACGAACCAAAATACACAGAGGAAGAAGTGAAGGACTTACTATC
AAAAGCCATTTATCCACCCAATGTTGGCACTGAACTGTTGTTTGAAAATA
GGTAAAAGCGCTTAAGTTTTGAGTTCTTTGGCGTGAGGAATAAGTGTCAT
CATTAAATGCTGGAATTATTTGTAGAATAGCTTAGTTAAAGTTGATTGTT
ATAAATTAATCCTTTAATCCTTAATATTCTTTAGATATTGTCGTGTTTGG
GATTTCTATTTGGAACCGGATGGGGGAGACCCTTTAAAGAATGCTCATCA
TCATGTTTTGGATTATGTTTTTGTTTATGTGGCTTGTGGAAGATTATTAG
GTAATAGAAGGGAAAGGGATTAGAATTTTCCTAATTCGTTGCTGCCCTTT
TATACACTTCATATAGTTTCATAATACTTTTGATTTGACAGTGTGATATA
TTTTTATCTAAAGAGGGAGAGGATGTTTAGCAAAAGTGTACGTCTATTGT
TTGAAAGACTTAATTTCCATTATTCTCTGCATACAAGGTGGAGGGGTGTC
AAATATTTGGAAGTTTTTTGCGTACATACGACATGGATGACCTAAACAAG
ATTTAAATTAGGAGGTGTATGAGAAAAGAAAACAGGAACAATGAATGGCT
ATACATGTTGTATTTACATTGAATCTACTTATTGCTTCTAGGGTACCATC
CTGATGGCAGACCAGGATTGTTTGATTCTGTTATGGAGAACAATGAAGTC
GTCTGGGAAGAAATTCCTTCCACAGCTGCTGAGAATGTAGAATATGCCCA
TGCTGGTAAAAACGGGTATAAAGATAAACCCATGCGAGAATATCTGCTAG
AATTGAAATGAAATGTAGATGGATGTATAAAGGATAAAATTAACATTTTT
TTGGTTTTTATAGCGCTTCTGTCCTGAGAAATTGAAGTTGATTTACTGGT
GAGAAGAGGAAATATCTGATGGAATTGAAATAAAGTTGTAATTGGGCTGA
TAGGAAAGAGGGATCAACTTGTTGAATGTCTAGAAAGTCATCCTTTATGG
GAAGTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047599-exon-scaffold_132-1575043694:188507..188754 | TCONS_00047599-exon-scaffold_132-1575043694:188507..188754 | Clytia hemisphaerica | exon |
| TCONS_00047599-exon-scaffold_132-1575043694:187904..188082 | TCONS_00047599-exon-scaffold_132-1575043694:187904..188082 | Clytia hemisphaerica | exon |
| TCONS_00047599-exon-scaffold_132-1575043694:187655..187770 | TCONS_00047599-exon-scaffold_132-1575043694:187655..187770 | Clytia hemisphaerica | exon |
| TCONS_00047599-exon-scaffold_132-1575043694:186948..187313 | TCONS_00047599-exon-scaffold_132-1575043694:186948..187313 | Clytia hemisphaerica | exon |
| TCONS_00047599-exon-scaffold_132-1510915933:188507..188754 | TCONS_00047599-exon-scaffold_132-1510915933:188507..188754 | Clytia hemisphaerica | exon |
| TCONS_00047599-exon-scaffold_132-1510915933:187904..188082 | TCONS_00047599-exon-scaffold_132-1510915933:187904..188082 | Clytia hemisphaerica | exon |
| TCONS_00047599-exon-scaffold_132-1510915933:187655..187770 | TCONS_00047599-exon-scaffold_132-1510915933:187655..187770 | Clytia hemisphaerica | exon |
| TCONS_00047599-exon-scaffold_132-1510915933:186948..187313 | TCONS_00047599-exon-scaffold_132-1510915933:186948..187313 | Clytia hemisphaerica | exon |
| TCONS_00047599-exon-scaffold_132-1491911889:188507..188754 | TCONS_00047599-exon-scaffold_132-1491911889:188507..188754 | Clytia hemisphaerica | exon |
| TCONS_00047599-exon-scaffold_132-1491911889:187904..188082 | TCONS_00047599-exon-scaffold_132-1491911889:187904..188082 | Clytia hemisphaerica | exon |
| TCONS_00047599-exon-scaffold_132-1491911889:187655..187770 | TCONS_00047599-exon-scaffold_132-1491911889:187655..187770 | Clytia hemisphaerica | exon |
| TCONS_00047599-exon-scaffold_132-1491911889:186948..187313 | TCONS_00047599-exon-scaffold_132-1491911889:186948..187313 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_132 | supercontig | scaffold_132:186948..188754 - |
Blast
The following BLAST results are available for this feature:
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