TCONS_00047602 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047602
Unique NameTCONS_00047602
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length506

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047602 ID=TCONS_00047602|Name=TCONS_00047602|organism=Clytia hemisphaerica|type=transcript|length=506bp
CTTTCATCTTCAAATATTATTATAAGAGCCCAAGGCTCCTGAAGGGTATG
GGTGCCGCcggtccagtgaagtagactaggagcgtttggcgaggtcgtCA
TGTTGagagaaaatgttgaaaatccaaataacaataaaactacttggagt
tgaaagatataatcaaaaatgagaaacaaacatcaatgaCACATTTGCAA
TCCCtcattctcaaataaaaatattgtttcatACTATTTTTACCATCCAA
AAGCAACTAAAATCGCCTAAAatcgcctaagcaaaagcatattaccatat
actaccggacCACTTAATCGCACCATCCAGTCTCTAAAAAAAGATGGCGA
CCCCAGGTTACTCCAACTCACCACTCCCTTCCATGTGACGTGTGACATGT
ATCAAATAGACACTTAAAGAACTTTGGACGCATTTATTTATGAGTGGTGA
AATTGTCAAGACAAAGCAATCAATTACTTTGATTCAAATTAAATTACCCA
ACTCTA
Run BLAST on NCBI

transcript from alignment at scaffold_132:6027..6532

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047602 ID=TCONS_00047602|Name=TCONS_00047602|organism=Clytia hemisphaerica|type=transcript|length=506bp|location=Sequence derived from alignment at scaffold_132:6027..6532 (Clytia hemisphaerica)
TAGAGTTGGGTAATTTAATTTGAATCAAAGTAATTGATTGCTTTGTCTTG
ACAATTTCACCACTCATAAATAAATGCGTCCAAAGTTCTTTAAGTGTCTA
TTTGATACATGTCACACGTCACATGGAAGGGAGTGGTGAGTTGGAGTAAC
CTGGGGTCGCCATCTTTTTTTAGAGACTGGATGGTGCGATTAAGTGgtcc
ggtagtatatggtaatatgcttttgcttaggcgatTTTAGGCGATTTTAG
TTGCTTTTGGATGGTAAAAATAGTatgaaacaatatttttatttgagaat
gaGGGATTGCAAATGTGtcattgatgtttgtttctcatttttgattatat
ctttcaactccaagtagttttattgttatttggattttcaacattttctc
tCAACATGacgacctcgccaaacgctcctagtctacttcactggaccgGC
GGCACCCATACCCTTCAGGAGCCTTGGGCTCTTATAATAATATTTGAAGA
TGAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030316XLOC_030316Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047602-exon-scaffold_132-1491911889:6027..6532TCONS_00047602-exon-scaffold_132-1491911889:6027..6532Clytia hemisphaericaexon
TCONS_00047602-exon-scaffold_132-1510915933:6027..6532TCONS_00047602-exon-scaffold_132-1510915933:6027..6532Clytia hemisphaericaexon
TCONS_00047602-exon-scaffold_132-1575043694:6027..6532TCONS_00047602-exon-scaffold_132-1575043694:6027..6532Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_132supercontigscaffold_132:6027..6532 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.358361	0.254812	0.859542	0.713976	0	0.636477	0.463657	0.289223	0.301984	0.626345	0	0.323344	0.327057	0.247513	0.0692682	0.582334	0.831715	0.185827	0	0	0.133822	0.684918	0.275983	0.124519	0.265833	1.26999	0.590247	0.354392	0.287173	0.278108
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047602 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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