TCONS_00047647 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00047647
Unique Name	TCONS_00047647
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2247

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_133:307564..314425+

transcript sequence

>TCONS_00047647 ID=TCONS_00047647|Name=TCONS_00047647|organism=Clytia hemisphaerica|type=transcript|length=2247bp
AGATAAAGAGATTTAAAAATACCAAAGAAAAACAATTGTGCTTTATCAAA
CATGGTTGTAGAAGTTGATCAAAAGAATGTCAAAGCTGCATTAAAAGATG
ATGTCAAGGAGGTTGCCAAAATTACCAAGGAAGCAGCCGGATCCAAAAGA
TCTTTTACCCGTTTCATTGCTCTGTGGCTTTCTGGGAGCGGGTAAAACAA
CCCTTCTTAAGCACATCTTGGAAACCAAACACAATGAAGAGGGCTTTAGA
TGTGCTGTTATCGTCAATGATATGGCAACTCTGAATATCGACAAAAGTTT
GATCGATCAGTCAGCCCTTGTTCAAAGTGACGAAGTCATTGCAATGCAAA
ATGGTTGTTTTTGCTGCACTCTTCAAAATGACCTTGTGGATCAAATTGTC
TCTTTGGCACAAAAGAATATATTTGATTACATGTTGATCGAGGCATCAGG
AGTTTCGGAACCAGCCCAAATCGCTCCACTTTTTGATCTTTGTGAAGATG
AGCATGACCATGAAGAGGAACATCCAGAAGGACCAGAGCTGGGTGAAGTT
GCAAGGCTTGATACATGTGTTACTGTTATTGATGCAGCTGAATTTTACAA
TAATCTTGAAAGCATGAAAATGTACGAGGAAGGGGACATGGTTGGAACGA
TTTCAGAACTTTTGATGGAACAAGTGGAGTATTCCAACGTTGTCATCCTC
AATAAACAAGATCTCATAAATGATAAGCAAAGAGCTGATATTCTAGACcg
aattaaaattttaaatccaaGAGCGAAGGTGCTTTCTTCACTTCAAAGTA
AAGTAGATGTCAAGGAGATATTAAATACAAATTTGTACAACAAAGTGGAG
ATGGATGAAGACTCAGTGATGTGCTCTGCAACCAGaattaaaGCAGAATC
GAATGAGGTTGAACCAGAATGTTGCGTTAAATCTGTTGAATCGGGTAAAA
AGAAATGTTGTAAAAGTAAAAAGGCTGAGAACAAGCAAATTATTGATTCC
GGAAAATCACAACTATTTCTTGGAGTGGTGGACAAAATTGCTGGTCAGAA
ACAACTAACCAGGCACGAAGAACGCTTTGGGATCACTTCCTTTGTTTATC
GGTCAAGAAGGCCATTTCATTCAGGACGACTTTGTGGATTATTTTTCGAA
CCGTTCTTCATCATGAGatacgaagaagaagaaaatgagttGGATGAGTT
GCAAAAGAAAGCAGCAAATAAACAAAAACGTAGAGTTAAAAAAATTGGTG
AACTATTACGTGCCAAAGGCTTCATGTGGCTTGCAACTTCCCATGAAATC
TTGGGTGGTTTTCAACAAGCTGGAAATGTTGTGAGGGTAGAAGCAGAAGG
GAATTGGATGGTTGATTGTCGTGACCAGTGGGAAGgggaagaaggagaag
aaagaGTTCTGAAAGATATGACGAACGAGAAAGGTGAAGAATACGAATAC
GGTGATCGCCGTCAAGAATTAGTTTTCATCGGAATGACTTTGAAATATCA
AACCATACAAAAAATATTAGATGAATGTCTTTTGACTGACGATGAAATGA
AGCTAGGACCGGAGAAATGGTTGGAACAGTTTGGCGAAGATGCTCCGTTG
AGATTGTTCTTAGTAGAGGATGAAGAAGAGGACAGTGAAGAGGACGAAGA
AGAAGATGGAGAGGGAACTGATGATGAGGAGACTGAAAACGAAGATGAAG
AGAAAAGTGAAATGGACGAGAAGAGCTCAGAAAAGACGACGGCTCCCGGT
AAAAAGCGAAAGGTCAAGAAAGATGCGGAGAAtaatgatgatgaagaaaa
gaaaaaagaaatcccAGCCAAGAGAAAGAAGAGCAAAAAAGACCTCGATA
ATGAATAAAGAAGAAACTAAACCTGACAAAGAAATCCCAGTCAAGAGAAA
TAAGAGCAAGAAACATTGATTTCTGGGGACCACTTGGATAAAGCTTTGAT
AAACATGCTTTGGGATTTGTAAAGATAATTTTCACACATTTTGTACATAG
TTTGGATAACACCATTTTTTTTATCGTGTCAGatttaattcttttttgat
atttctttctACCAATGTCTCATTAGAATAAAATCCTCTCTTGCTATTTA
CCTCGTCGGATACTAAATGTAatcaagaattaaaaaaaaaaccaaagaTG
CATTTGAAAAAGACTACAANatttaattcttttttgatatttctttctAC
CAATGTCTCATTAGAATAAAATCCTCTCTTGCTATTTACCTCGTCGG

Run BLAST on NCBI

transcript from alignment at scaffold_133:307564..314425+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00047647 ID=TCONS_00047647|Name=TCONS_00047647|organism=Clytia hemisphaerica|type=transcript|length=6862bp|location=Sequence derived from alignment at scaffold_133:307564..314425+ (Clytia hemisphaerica)
AGATAAAGAGATTTAAAAATACCAAAGAAAAACAATTGTGCTTTATCAAA
CATGGTTGTAGAAGTTGATCAAAAGAATGTCAAAGCTGCATTAAAAGATG
ATGTCAAGGAGGCTGACAAGATCACANGTTGATCAAAAGAATGTCAAAGC
TGCATTAAAAGATGATGTCAAGGAGGTTGCCAAAATTACCAAGGTTCGTT
TATAAACTGCTTttgttttttactttattttttattatccaTCTACAATC
CCCACcgtaatatttggcacaaaaggggaattcccccAAATTTGAAAACC
GCAAGTAattttttaagtgctttaaagtacggtttgaaagtagagtttta
actctgaattttaacacgagacttaagagttaggaccttaggatctcagg
atctaaaagttcaaaaatgttccaataaggctgagaatatagcctggaag
ccacttaatccctcccaaatcgaaaaatccaatgaaacaaagtggaagta
ctgaaactgcaattctcgctcgatctttaaattctgaaaacgttaaaata
cccaaaagtgtcaatatattttggcgCCGATTGTACTAGACAAATAGATA
AACGCTAGCCCAATTCACCCAAAAGTTTTCCTTTCAAATAATTATCACAa
gataaaacaatgcaatgaaaGCACTGGAtaacatattatttaaaaatgat
ttttagcaATAGGATCATGAGAGTCTTATCCAATTATATACCATATTTCT
AATATAGAAGCAGCCGGATCCAAAAGATCTTTTACCCGTTTCATTGCTCT
GTGGCTTTCTGGGAGCGGGTAAAACAACCCTTCTTAAGCACATCTTGGAA
ACCAAACACAATGAAGAGGGCTTTAGATGTGCTGTTATCGTCAATGATAT
GGCAACTCTGAATATCGACAAAAGTTTGATCGATCAGTCAGCCCTTGTTC
AAAGTGACGAAGTCATTGCAATGCAAAATGGTTGTTTTTGCTGCACTCTT
CAAAATGACCTTGTGGATCAAATTGTCTCTTTGGCACAAAAGAATATATT
TGATTACATGTTGATCGAGGCATCAGGAGTTTCGGAACCAGCCCAAATCG
CTCCACTTTTTGATCTTTGTGAAGATGAGCATGACCATGAAGAGGAACAT
CCAGAAGGACCAGAGCTGGGTGAAGTTGCAAGGCTTGATACATGTGTTAC
TGTTATTGATGCAGCTGAATTTTACAATAATCTTGAAAGCATGAAAATGT
ACGAGGAAGGGGACATGGTTGGTAGGTTTCACTGATTTATGCCACAGATA
TCTTATTAACGTATCTATACGAGTAGCATACTTGCAATGGCAGTCAAGGT
GGGGGGGGCGATGGTTGGTGTAATAATAAAGAGCTATGTTTTttgcaaac
ttaatttttgaatttggaaTTATGTGTCAAAATATTTGGCTATGTAGATA
GAATAATATACCATCTTTCAATTTTAGGAACGATTTCAGAACTTTTGATG
GAACAAGTGGAGTATTCCAACGTTGTCATCCTCAATAAACAAGATCTCAT
AAATGATAAGCAAAGAGCTGATATTCTAGACcgaattaaaattttaaatc
caaGAGCGAAGGTGCTTTCTTCACTTCAAAGTAAAGTAGATGTCAAGGAG
ATATTAAATACAAATTTGTACAACAAAGTGGAGATGGATGAAGACTCAGT
GATGTGCTCTGCAACCAGGTAACATATCTCTTATCTTTTATATCTTAGCA
TCAGGGAAGCATCTCTTATGAAGAAAGGAGGCAAGATCTTATCATTTTGA
ACGAGAATTTCTCAAACTCGTAACACTACCATCTTACAGTATTAATGTGT
TGGGTAttgtaaaacttttttgaagaagaatattttacttttagaaCTAA
ACCCAATTATTTTGAGAAGACGTATTGAAATTCCCAATCTTAGAACTGTC
CCTAATTTCCCAATAGGATCTGATTTCACTAGAAAATTTTGCAGATCTTT
CGAATGAGTATTGTGAAAACTTTTCCCTTTTGCTATTGAGACTCGCTTTT
ATTTTGGAGAGGTCGTCAGGCTTTAGATTGGAGTTTTTTGGacattttac
atatttttttagaattaaaGCAGAATCGAATGAGGTTGAACCAGAATGTT
GCGTTAAATCTGTTGAATCGGGTAAAAAGAAATGTTGTAAAAGTAAAAAG
GCTGAGAACAAGCAAATTATTGATTCCGGAAAATCACAACTATTTCTTGG
AGTGGTGGACAAAATTGCTGGTCAGAAACAACTAACCAGGCACGAAGAAC
GCTTTGGGATCACTTCCTTTGTTTATCGGTCAAGAAGGCCATTTCATTCA
GGACGACTTTGTGGATTATTTTTCGAACCGTTCTTCATCATGAGatacga
agaagaagaaaatgagttGGATGAGTTGCAAAAGAAAGCAGCAAATAAAC
AAAAACGTAGAGTTAAAAAAATTGGTGAACTATTACGTGCCAAAGGCTTC
ATGTGGCTTGCAACTTCCCATGAAATCTTGGGTGGTTTTCAACAAGCTGG
AAATGTTGTGAGGTAAGTTCATCAAttctcttaaatattttcataaatta
ttaaGAACAATGAATCTTTACTTTGAATCTTGGGGAGGGGCGCTCGAGAG
GGGCCTTTAAATCTCAAGATTGACTAGTGCTATGACCTTGAAACTTTGAC
CAGTGGTAGATATAGATAATTGAAGAtggtttgcaaaattttggttcGGC
CACCTTTCTAgttagtattttacagaccagaccaaacttgaccaaaatca
tgtattgactgattgacttGTTCGATTTGACGGAAATTTGTTCATAAAGG
CTGATTTGTCAAATAATAGAGACTATTAACAGGAAAAGTTCGTTTCCATG
AGTATTAGGGAATTtgcagactggtctgtaaaatacatgcTGACCACTTG
CGGGAACTCATGAACTGCAggagcttttgacttgaaattttcaccagtga
tagatattgaccatctaagacagtgtggtattttacagaccggtcggttt
tttacctaaaatgatCACTTTCGGCATAACCACTTGTCcgattttgctaa
aattttgggTGCAAGCTTGTATCATCAATACCTAACACTTTNGATATTGA
CCATCTAAGACAGtgtggtattttacagaccggtcggttttttacctaaa
atgatCACTTTCGGCATAACCACTCACCCGATTTTGCTAAAGTTTTGGGT
GCAAGCTTGTATCATTAATACCTAAcacttgtcaaaatttcaatggCATT
TTCCACTCACTAGATACAGTATCCTAGGGCTGTTTAGGCAAAAAAGGGTA
ATTTTGGGCCACTCTGTAAAATACACCATACCAACAGGTggcaaaaaaag
tttaaagtgagAAAAAGCTAGAGGGGGtcctatttttgctattttcaata
aatgatgacgtcatcaggtggtggttacgaaattttcattaaagatGCTA
ATTCATATTCATATTTGTTGCCCACTTGCAAGATCTCAAGTcaattggat
aaatatttcaaaatttatcaataaatttcgTTAGGCCCCTCCCAATTAGA
AAAGTTCAAGTTAGCAAATATAGAACGAACAAATACACCTATCAGAGGAA
TTatcagaatttttttgtttctgataAATTTACAAGGAAATTCTTTTCTA
TGAGTGTAACGACTTCAGACATTTTGACGTCTGTTCTTCCTGGTCATCTC
CAACAACCCAGTACGCTCAAAAGCTAGGTAGGTGTTTTCGGttcaaacaa
aagattttattctGTTTTTCATTCTATAATAGGGTAGAAGCAGAAGGGAA
TTGGATGGTTGATTGTCGTGACCAGTGGGAAGgggaagaaggagaagaaa
gaGTTCTGAAAGATATGACGAACGAGAAAGGTGAAGAATACGAATACGGT
GATCGCCGTCAAGAATTAGTTTTCATCGGAATGACTTTGAAATATCAAAC
CATACAAAAAATATTAGATGAATGTCTTTTGACTGACGATGAAATGAAGC
TAGGACCGGAGAAATGGTTGGAACAGTTTGGCGAAGATGCTCCGTTGAGA
TTGTTCTTAGTAGAGGATGAAGAAGgtgacatttttgtttttaatttata
aaaaatcattCTTCTAGCTGTTTCTTTGGTGACTTTGTTGGCGGATCAAC
TGCTGTTTTTCCTTTTAATACCACTATCTTTGTAGTCAAAAGGAACCCCC
TCCTTCAATTATTTTTGTCCTAAAGTAAAAAGTCTAAGGGAAACCGATGT
AGCGGATTATTTTAACTCCTTGTAAATGTCGGCCTCCCCAGTTAAGAATA
AACTAGAAAATAATGACTCCCCTAGAGTAgaaatttcctaggaaatatcG
ACTCCCTTAGTAAATATTGGCTCCCTATAAAGAGGCTGAGAGAGTCGTGA
TGAAATAGTTTATAATGATCCCCGACCCCCAAGTAGACAAGAACTGGAGT
CATTGCAGTGCTGTTCGATTCGGTTTTTTACGGAACTGACTTTTGTCGTT
GGGACTCATTTTGGCGAAATTCCTTCATTCTCCAAGGGACTTAAAAGAGT
CTTCAGAATGTGTGGTATTTTTGCATAACAGAATTTCACGTAATTTTCGG
TTGACACGAAGTAAACTTTTATTCCTCAAGAATGTTTACCAAAAATCTAT
AGTTAgctacaaccaatcagctgttaggTCTATGGTGTGATgtcgaagac
attgcagtgggtGCATATAATGAATAGGAAtagtataaaattgttctttc
attttGTTCGTTTGCAGAGGACAGTGAAGAGGACGAAGAAGAAGATGGAG
AGGGAACTGATGATGAGGAGACTGAAAACGAAGATGAAGAGAAAAGGTAt
actttttgtaaaatttgccaTTTGTCTTTTGCGGACCTACCTGGAGTTCC
TATCAACTCCTAGTTAGTGAGTGAGTGAGTTGCACAAagacgtgttttta
tagaaaaatgggccaaattcaacatttttttataagcacacaatCACTAC
CAATTACTCagttattagcttttctcgagattggctcattcattCTTTAT
GGTTTTTATGCACAAAcgtgcataactataaaccctcgaatgtgacggag
catGTTTTTTATTCGGGATTTTATTTTATCTGGGATTTgtattccattgt
tttcaaatcagaaaattcagtggggatggaaaaaatagcacaatattttg
cagtcaGATTTTGgttatttgataatttttttgtgagtACAAAAGttaga
ggataattttccacgagacgatattttggctcCAAGGCTTTTAGTATTCC
CGTTTCGACCTGCgcatagtttttttttgtttttatttcgtcAATGAAAA
TTATGTCAAGGGACAGGCAGTTTTCTTGAGATTTGGTTTTTAGTAGTCCC
TATCTGGATTTTGCCGAATCGGtctattcagttttttttaaccTGTTTTA
TCATTTAATATAGTGAAATGGACGAGAAGAGCTCAGAAAAGACGACGGCT
CCCGGTAAAAAGCGAAAGGTCAAGAAAGATGCGGAGAAtaatgatgatga
agaaaagaaaaaagaaatcccAGCCAAGAGAAAGAAGAGCAAAAAAGACC
TCGATAATGAATAAAGAAGAAACTAAACCTGACAAAGAAATCCCAGTCAA
GAGAAATAAGAGCAAGAAACATTGATTTCTGGGTAGGTTAACTAAACATT
CACAACTTGTGTATCAATGAGTTATTGATTGAGAAGTGTGGAGCTTGGCG
CTTGGCACTATCAGTCATCGTCTATAGGCTGCATACAAGGGTGGATTAAG
TTGTGTTCGATGAAATAGGGTTGAACGACACCAGGGGGGGTACaaaggca
gggtactaacccatagccgggtggtggtgtctatttttgcatttcaaaaa
agttagtacccgttACTACTTTAGGGGTGGGGGTGTGTATTTATCACTCT
TCTAGCAAGTACAGGgtactatttgggtactttttcacagagTTTTNtgt
atttttcactcttctAGCAAGTACAGGgtactatttgggtactttttcac
agagttttgctcctttttcaataaaaaaagtagtcttttgtaatattttg
atttttttcaaatatatttttttttaattgagaaactttttttttaattg
agaaacttttttttactctttttgatttttgtgaagacAAAACTTCCGAA
ATGGTCAAAAAGTGTGTTATTAAAATCAAAAGACAAAAGCCTCTGACTTA
ATCAATGATAGTTTGTTTGAATTATCTGTCCAtttcagtcagaaaaacta
ACATAGTACCCCCCCCCTGACGACACAAGTTTCTAGTTAAAAAAGGAATT
GAAACtattttattcatgatattcattacgtaatATTTTCCATGGAACCA
TCccagtttttgccagtagtggttTCTTGGCTcgaatttctttgaatttt
cttGAGCACTTTGTAATTCAATTTATTTCATTGTATTTCAGGGACCACTT
GGATAAAGCTTTGATAAACATGCTTTGGGATTTGTAAAGATAATTTTCAC
ACATTTTGTACATAGTTTGGATAACACCATTTTTTTTATCGTGTCAGatt
taattcttttttgatatttctttctACCAATGTCTCATTAGAATAAAATC
CTCTCTTGCTATTTACCTCGTCGGATACTAAATGTAatcaagaattaaaa
aaaaaaccaaagaTGCATTTGAAAAAGACTACAANatttaattctttttt
gatatttctttctACCAATGTCTCATTAGAATAAAATCCTCTCTTGCTAT
TTACCTCGTCGG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_030343	XLOC_030343	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_133	supercontig	scaffold_133:307564..314425 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.05904	13.9197	3.12076	0.13853	9.01027	13.5125	4.97743	14.0784	2.47872	3.18077	1.79093e-06	2.01556	8.47906e-06	0	3.31857	4.22773	1.88333	2.44394	5.92282e-05	3.26118	15.2282	0.0758067	1.47435	0.551602	6.55883	7.76985	0.134765	6.96302	0.00846527	0.167586

Blast

[Close]

BLAST of TCONS_00047647 vs. Swiss-Prot (Human)
Match: CBWD2 (COBW domain-containing protein 2 OS=Homo sapiens GN=CBWD2 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.466e-21
Identity = 67/233 (28.76%), Postives = 129/233 (55.36%), Query Frame = 2

Query:  155 LPVSLLCGFLGAGKTTLLKHILETKHNEEGFRCAVIVNDMATLN-IDKSLIDQSALVQSDEVIAMQNGCFCCTLQNDLVDQIVSLAQ-KNIFDYMLIEASGVSEPAQIAPLFDLCXXXXXXXXXXXXXXXXXXVARLDTCVTVIDAAEFYNNLESMKMYEEGDMVGTISELLMEQVEYSNVVILNKQDLINDKQRADILDRIKILNPRAKVLSSLQSKVDVKEILNTNLYNKV 847
            +PV+++ G+LGAGKTTLL +IL  +H++   R AVI+N+    + ++KSL         +E + ++NGC CC+++++ +  I +L Q K  FDY+L+E +G+++P  +A +F                 ELG    LD  +T++D+         +K   E    G I+E    QV  ++ +++NK DL+ ++    +   I+ +N   ++L + +S+VD+  +L+ + ++ +
Sbjct:   42 IPVTIITGYLGAGKTTLLNYILTEQHSK---RVAVILNEFGEGSALEKSLAVSQGGELYEEWLELRNGCLCCSVKDNGLRAIENLMQKKGKFDYILLETTGLADPGAVASMF-------------WVDAELGSDIYLDGIITIVDSK------YGLKHLAEEKPDGLINE-ATRQVALADAILINKTDLVPEEDVKKLRATIRSINGLGQILETQRSRVDLSNVLDLHAFDSL 251

The following BLAST results are available for this feature:

BLAST of TCONS_00047647 vs. Swiss-Prot (Human)

BLAST of TCONS_00047647 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CBWD2	1.466e-21	28.76	COBW domain-containing protein 2 OS=Homo sapiens G...	[more]

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TCONS_00047647 (transcript) - C. hemisphaerica