TCONS_00047686 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047686
Unique NameTCONS_00047686
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length342

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047686 ID=TCONS_00047686|Name=TCONS_00047686|organism=Clytia hemisphaerica|type=transcript|length=342bp
AGTGAGTACGATCCCGACTTGCGGGAACGGTTTCCAAGTGTATGGACAAA
CGGAGTGCGTGATGGGAAATTACTCGTTAGCACCGCAAAATGATTTTTGT
CCACCGGCAGGATATCATATCAAAAGTTGCTACATCGAATGCAGTGATCA
AGCTGATTATGGTAGTGTACAAACACACAATCTAGATGACCTAACAGTTC
AAGAATTTACTGATACTCACTACAATGAATCTGCTCCTCTTTACCTAAAT
ATGATGTGGTTCCCGAGTTACCAGAATGATTATGCTGGTGTTAATGCAGT
CAAGGCCGAGTCGCCCTCTCAAGAGTACATCGAACTCCAGGT
Run BLAST on NCBI

protein sequence of TCONS_00047686-protein

>TCONS_00047686-protein ID=TCONS_00047686-protein|Name=TCONS_00047686-protein|organism=Clytia hemisphaerica|type=polypeptide|length=113bp
VSTIPTCGNGFQVYGQTECVMGNYSLAPQNDFCPPAGYHIKSCYIECSDQ
ADYGSVQTHNLDDLTVQEFTDTHYNESAPLYLNMMWFPSYQNDYAGVNAV
KAESPSQEYIELQ
Run BLAST on NCBI

transcript from alignment at scaffold_133:523157..524108-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047686 ID=TCONS_00047686|Name=TCONS_00047686|organism=Clytia hemisphaerica|type=transcript|length=952bp|location=Sequence derived from alignment at scaffold_133:523157..524108- (Clytia hemisphaerica)
AGTGAGTACGATCCCGACTTGCGGGAACGGTTTCCAAGTGTATGGACAAA
CGGAGTGCGTGATGGGAAATTACTCGTTAGCACCGCAAAATGATTTTTGT
CCACCGGCAGGATATCATATCAAAAGTTGCTACATCGAATGCAGTGGTAT
ACTATTATAGTTCATTCTCTTAGAAATACAATCAACTCTCTCTATTATTC
GAATTTTTCTGTAATTCGAACTAAAATATTGGTCCCCTTAAAGTGGTTTA
AATTACCCCCTGTAATTTGAATCTTTCTCGCTCTAATTGAAAGAAAATGT
TTTGTCCCTTGAAGATCGTATTTGGGAGAGTTAACTATCTACTCTTTCTT
GTTACGCTGTAGAAAAAACGTAAGCATTAGAGAAAATCCCCTTGCGATTT
GGTTTTCATATAGTGGTAATAAAAGAGTACTGCAATATTTCAAATCAACG
CCACCTTCTTTCAAACGCCTTCTCAAATGAACGCCCTCTGACGAGAAATA
TTCAACATACGCCCCTTTTAGATAAACACCGTACTACTATCGGGTACCTT
ATAGCCAGGGGGTTTGGAATAAGCGCAGGGGGGGTAGGAAAAAATCTCAA
AAGTTAATAAGAGGGGGGGGGCTGAAATAAGAATGTCTTCGGTGGAAAAT
TTTCGATTAATTAATTAGCGGCCCCCCGGCTACCAAGCACCCGAGAGTAC
CTGTCTGCTTTCACCATCGACTTAACCAGTAAAGACAACGAACTGATTTC
TTTTAGATCAAGCTGATTATGGTAGTGTACAAACACACAATCTAGATGAC
CTAACAGTTCAAGAATTTACTGATACTCACTACAATGAATCTGCTCCTCT
TTACCTAAATATGATGTGGTTCCCGAGTTACCAGAATGATTATGCTGGTG
TTAATGCAGTCAAGGCCGAGTCGCCCTCTCAAGAGTACATCGAACTCCAG
GT

Coding sequence (CDS) from alignment at scaffold_133:523157..524108-

>TCONS_00047686 ID=TCONS_00047686|Name=TCONS_00047686|organism=Clytia hemisphaerica|type=CDS|length=678bp|location=Sequence derived from alignment at scaffold_133:523157..524108- (Clytia hemisphaerica)
ATCAAGCTGATTATGGTAGTGTACAAACACACAATCTAGATGACCTAACA
GTTCAAGAATTTACTGATACTCACTACAATGAATCTGCTCCTCTTTACCT
AAATATGATGTGGTTCCCGAGTTACCAGAATGATTATGCTGGTGTTAATG
CAGTCAAGGCCGAGTCGCCCTCTCAAGAGTACATCGAACTCCAGGTGAGT
ACGATCCCGACTTGCGGGAACGGTTTCCAAGTGTATGGACAAACGGAGTG
CGTGATGGGAAATTACTCGTTAGCACCGCAAAATGATTTTTGTCCACCGG
CAGGATATCATATCAAAAGTTGCTACATCGAATGCAGTGATCAAGCTGAT
TATGGTAGTGTACAAACACACAATCTAGATGACCTAACAGTTCAAGAATT
TACTGATACTCACTACAATGAATCTGCTCCTCTTTACCTAAATATGATGT
GGTTCCCGAGTTACCAGAATGATTATGCTGGTGTTAATGCAGTCAAGGCC
GAGTCGCCCTCTCAAGAGTACATCGAACTCCAGGTGAGTACGATCCCGAC
TTGCGGGAACGGTTTCCAAGTGTATGGACAAACGGAGTGCGTGATGGGAA
ATTACTCGTTAGCACCGCAAAATGATTTTTGTCCACCGGCAGGATATCAT
ATCAAAAGTTGCTACATCGAATGCAGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030365XLOC_030365Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047686-proteinTCONS_00047686-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047686-exon-scaffold_133-1575043694:523963..524108TCONS_00047686-exon-scaffold_133-1575043694:523963..524108Clytia hemisphaericaexon
TCONS_00047686-exon-scaffold_133-1575043694:523157..523352TCONS_00047686-exon-scaffold_133-1575043694:523157..523352Clytia hemisphaericaexon
TCONS_00047686-exon-scaffold_133-1510915933:523963..524108TCONS_00047686-exon-scaffold_133-1510915933:523963..524108Clytia hemisphaericaexon
TCONS_00047686-exon-scaffold_133-1510915933:523157..523352TCONS_00047686-exon-scaffold_133-1510915933:523157..523352Clytia hemisphaericaexon
TCONS_00047686-exon-scaffold_133-1491911889:523963..524108TCONS_00047686-exon-scaffold_133-1491911889:523963..524108Clytia hemisphaericaexon
TCONS_00047686-exon-scaffold_133-1491911889:523157..523352TCONS_00047686-exon-scaffold_133-1491911889:523157..523352Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_133supercontigscaffold_133:523157..524108 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.17495	3.10893	0.475689	1.0737	0.719451	0.28426	0	0.963189	1.95558	1.90194	2.12497	0.177653	34.4758	33.3569	6.35165	4.66745	0	0.94908	66.382	71.5794	1.73849	1.13218	3.37119	3.7319	6.1244	10.8457	0	0.390354	1.73608	0.603297
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047686 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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