|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047687 ID=TCONS_00047687|Name=TCONS_00047687|organism=Clytia hemisphaerica|type=transcript|length=1969bp
TTCAGGAAATAATTAaaagaaggtaaaaaacaaacaaagaaaaactaaTG
GCAGAAGGACTAAAATCTGCAAGTACAGTCCTAAGAGAATTTCGACTTAT
ACTTCAACCGTCTTTTGGACCAAATGGTAAAGATGTGTTATTGAAAAGTG
ATACCGGAGTTGTCTACCTTACCAAGTATTGTGGCACCATATTGAAACAC
TTAGAGGTCAAACATCCAattggaaaaatcataaaagATACAATACAAAC
TGTGTTAAATCGTGGAGGCTGCGGGGGGAAAACGTTCATTATAGTGCTAT
CCAATTTAACTGCTCTTTTAATGAGAAGAATTGTTGATCAGCGTAGCCGG
AGTATAGAGAAAGTCTCATTTGAGTTGTCCTGTACAGCAATATCattatt
aaaaatcaaaaattatttatacGAATATTTTAAGAATGGCAACATTGGAA
ATATTGTAAAATCAATAGATGAAAAAGAATTTATGGGTCATTATTTGGAG
AAATTGTTGATGACTACCTATGAAGGGAAGCTTCAAACATCAAGTGCTTT
TGTTTTTGTCCGATTACTCAAAAGCTTATTGGATGGTGTTAAATTTGATG
AGAATGATGTCATTGAAGATGTTGTTGACCACTTTGATGATATTTACTGC
CCGCTAATAGGAGTTTCATTGAGCGAATCTTGTCTTATTGACGGTTATCT
TATACAGAGAGAATCTAACCTGAATAACTTTCACATTCAAAGTAAACCCA
ATTTCATTTTACTGGGATGCGAATCCGCTGATCATATGGCTAAAATTACC
ATGTCTCTTAACTCCGCTAATATCAACACTCTAATACATAAATCTCATAA
TTACACCAAGATTATCGATTTTCTGAAAGAGAAAAATGTAAGAGTGATTT
TCAGTGAATTTCAACTGCCCAACAAACttcaaagttttatttctaAACTA
GATATCGTTGTTGTGCCTTATGTTTTATCAACTGATTTAGAGAGGATGTC
GTTGCTCTACGATGCACCTATTTTCTTTGGGTTGTATGATTTATATAATG
CTGATCTAATGAGTTTTTGTATTGGAAAATGTGATTCTATTCGATCATTT
AATGTTGGTAAAATCAATGGGTGTCTGGTTGGCCCTGCATTAAGTGGGAA
AATGACACATTatgtaaacaaacaaattttgttAGGATGTCCCTCTAGTG
GATTGGAAATACAATACCGAAAAATTCTACACGATTCATTTAAAATTGTT
TTACAAGCATataataagaaaaatagatGTTTCGATTTGGTTCCTGCTGG
TGGTGCCTTTGAATGCTATATTGCGAAAATTTTGAATGATTACATGCTAA
AGAGCATTGATGAGAGTGAGCGTTATTTATGTCAATTTTTGGTTAAGTCT
CTACTCTCTATACCAAAACTTTTACATGAAAATTCCCACCAGAAAGGAAG
TGCAGATAGATTCATACTAAATGATGTATTGCTTGAGGGAAATTGTGTTG
ATGTCCAAAATGGGCGTGTAATGGACGTAGCCGAGATGGACTGTTATGAA
GCTTACCAATCGAAAATTGATTCGATGATGACTATGTTGTCATTAGCAAT
ACAATTGGTGAAAATCCAGCATATTATCCCAGTGTCTGCATCTTCAAAAC
TGTTACAGGATGATAATAGAGAGGAAAatccaaaataagaaaaaaaatca
tattgaTGTCTTCTTATACTTATTACAACCTGCTACATGTTGGGAGCCTC
CAAGGACACAAAATTCCGGAATAATTTATTTATAAAATACCTTAACTCCT
ATATTTATTTGTTAACACTTCTTTACTtgatatattttatttcttttaaa
aggtTAAGAATCTTGTATAAACCAACGCAAAACTCAAGATATAGAAGTTT
tacatttgttttcaaaattaaactGTAAATTTGAAAAGTGACGTGTTGAA
TGTATATAAAAGGATGGAT Run BLAST on NCBI protein sequence of TCONS_00047687-protein >TCONS_00047687-protein ID=TCONS_00047687-protein|Name=TCONS_00047687-protein|organism=Clytia hemisphaerica|type=polypeptide|length=546bp
MAEGLKSASTVLREFRLILQPSFGPNGKDVLLKSDTGVVYLTKYCGTILK
HLEVKHPIGKIIKDTIQTVLNRGGCGGKTFIIVLSNLTALLMRRIVDQRS
RSIEKVSFELSCTAISLLKIKNYLYEYFKNGNIGNIVKSIDEKEFMGHYL
EKLLMTTYEGKLQTSSAFVFVRLLKSLLDGVKFDENDVIEDVVDHFDDIY
CPLIGVSLSESCLIDGYLIQRESNLNNFHIQSKPNFILLGCESADHMAKI
TMSLNSANINTLIHKSHNYTKIIDFLKEKNVRVIFSEFQLPNKLQSFISK
LDIVVVPYVLSTDLERMSLLYDAPIFFGLYDLYNADLMSFCIGKCDSIRS
FNVGKINGCLVGPALSGKMTHYVNKQILLGCPSSGLEIQYRKILHDSFKI
VLQAYNKKNRCFDLVPAGGAFECYIAKILNDYMLKSIDESERYLCQFLVK
SLLSIPKLLHENSHQKGSADRFILNDVLLEGNCVDVQNGRVMDVAEMDCY
EAYQSKIDSMMTMLSLAIQLVKIQHIIPVSASSKLLQDDNREENPK Run BLAST on NCBI transcript from alignment at scaffold_133:134330..136298 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047687 ID=TCONS_00047687|Name=TCONS_00047687|organism=Clytia hemisphaerica|type=transcript|length=1969bp|location=Sequence derived from alignment at scaffold_133:134330..136298 (Clytia hemisphaerica)
ATCCATCCTTTTATATACATTCAACACGTCACTTTTCAAATTTACagttt
aattttgaaaacaaatgtaAAACTTCTATATCTTGAGTTTTGCGTTGGTT
TATACAAGATTCTTAaccttttaaaagaaataaaatatatcaAGTAAAGA
AGTGTTAACAAATAAATATAGGAGTTAAGGTATTTTATAAATAAATTATT
CCGGAATTTTGTGTCCTTGGAGGCTCCCAACATGTAGCAGGTTGTAATAA
GTATAAGAAGACAtcaatatgattttttttcttattttggatTTTCCTCT
CTATTATCATCCTGTAACAGTTTTGAAGATGCAGACACTGGGATAATATG
CTGGATTTTCACCAATTGTATTGCTAATGACAACATAGTCATCATCGAAT
CAATTTTCGATTGGTAAGCTTCATAACAGTCCATCTCGGCTACGTCCATT
ACACGCCCATTTTGGACATCAACACAATTTCCCTCAAGCAATACATCATT
TAGTATGAATCTATCTGCACTTCCTTTCTGGTGGGAATTTTCATGTAAAA
GTTTTGGTATAGAGAGTAGAGACTTAACCAAAAATTGACATAAATAACGC
TCACTCTCATCAATGCTCTTTAGCATGTAATCATTCAAAATTTTCGCAAT
ATAGCATTCAAAGGCACCACCAGCAGGAACCAAATCGAAACatctatttt
tcttattatATGCTTGTAAAACAATTTTAAATGAATCGTGTAGAATTTTT
CGGTATTGTATTTCCAATCCACTAGAGGGACATCCTaacaaaatttgttt
gtttacatAATGTGTCATTTTCCCACTTAATGCAGGGCCAACCAGACACC
CATTGATTTTACCAACATTAAATGATCGAATAGAATCACATTTTCCAATA
CAAAAACTCATTAGATCAGCATTATATAAATCATACAACCCAAAGAAAAT
AGGTGCATCGTAGAGCAACGACATCCTCTCTAAATCAGTTGATAAAACAT
AAGGCACAACAACGATATCTAGTTtagaaataaaactttgaaGTTTGTTG
GGCAGTTGAAATTCACTGAAAATCACTCTTACATTTTTCTCTTTCAGAAA
ATCGATAATCTTGGTGTAATTATGAGATTTATGTATTAGAGTGTTGATAT
TAGCGGAGTTAAGAGACATGGTAATTTTAGCCATATGATCAGCGGATTCG
CATCCCAGTAAAATGAAATTGGGTTTACTTTGAATGTGAAAGTTATTCAG
GTTAGATTCTCTCTGTATAAGATAACCGTCAATAAGACAAGATTCGCTCA
ATGAAACTCCTATTAGCGGGCAGTAAATATCATCAAAGTGGTCAACAACA
TCTTCAATGACATCATTCTCATCAAATTTAACACCATCCAATAAGCTTTT
GAGTAATCGGACAAAAACAAAAGCACTTGATGTTTGAAGCTTCCCTTCAT
AGGTAGTCATCAACAATTTCTCCAAATAATGACCCATAAATTCTTTTTCA
TCTATTGATTTTACAATATTTCCAATGTTGCCATTCTTAAAATATTCgta
taaataatttttgatttttaataatGATATTGCTGTACAGGACAACTCAA
ATGAGACTTTCTCTATACTCCGGCTACGCTGATCAACAATTCTTCTCATT
AAAAGAGCAGTTAAATTGGATAGCACTATAATGAACGTTTTCCCCCCGCA
GCCTCCACGATTTAACACAGTTTGTATTGTATcttttatgatttttccaa
tTGGATGTTTGACCTCTAAGTGTTTCAATATGGTGCCACAATACTTGGTA
AGGTAGACAACTCCGGTATCACTTTTCAATAACACATCTTTACCATTTGG
TCCAAAAGACGGTTGAAGTATAAGTCGAAATTCTCTTAGGACTGTACTTG
CAGATTTTAGTCCTTCTGCCAttagtttttctttgtttgttttttacctt
ctttTAATTATTTCCTGAA Coding sequence (CDS) from alignment at scaffold_133:134330..136298 >TCONS_00047687 ID=TCONS_00047687|Name=TCONS_00047687|organism=Clytia hemisphaerica|type=CDS|length=1641bp|location=Sequence derived from alignment at scaffold_133:134330..136298 (Clytia hemisphaerica)
ttattttggatTTTCCTCTCTATTATCATCCTGTAACAGTTTTGAAGATG
CAGACACTGGGATAATATGCTGGATTTTCACCAATTGTATTGCTAATGAC
AACATAGTCATCATCGAATCAATTTTCGATTGGTAAGCTTCATAACAGTC
CATCTCGGCTACGTCCATTACACGCCCATTTTGGACATCAACACAATTTC
CCTCAAGCAATACATCATTTAGTATGAATCTATCTGCACTTCCTTTCTGG
TGGGAATTTTCATGTAAAAGTTTTGGTATAGAGAGTAGAGACTTAACCAA
AAATTGACATAAATAACGCTCACTCTCATCAATGCTCTTTAGCATGTAAT
CATTCAAAATTTTCGCAATATAGCATTCAAAGGCACCACCAGCAGGAACC
AAATCGAAACatctatttttcttattatATGCTTGTAAAACAATTTTAAA
TGAATCGTGTAGAATTTTTCGGTATTGTATTTCCAATCCACTAGAGGGAC
ATCCTaacaaaatttgtttgtttacatAATGTGTCATTTTCCCACTTAAT
GCAGGGCCAACCAGACACCCATTGATTTTACCAACATTAAATGATCGAAT
AGAATCACATTTTCCAATACAAAAACTCATTAGATCAGCATTATATAAAT
CATACAACCCAAAGAAAATAGGTGCATCGTAGAGCAACGACATCCTCTCT
AAATCAGTTGATAAAACATAAGGCACAACAACGATATCTAGTTtagaaat
aaaactttgaaGTTTGTTGGGCAGTTGAAATTCACTGAAAATCACTCTTA
CATTTTTCTCTTTCAGAAAATCGATAATCTTGGTGTAATTATGAGATTTA
TGTATTAGAGTGTTGATATTAGCGGAGTTAAGAGACATGGTAATTTTAGC
CATATGATCAGCGGATTCGCATCCCAGTAAAATGAAATTGGGTTTACTTT
GAATGTGAAAGTTATTCAGGTTAGATTCTCTCTGTATAAGATAACCGTCA
ATAAGACAAGATTCGCTCAATGAAACTCCTATTAGCGGGCAGTAAATATC
ATCAAAGTGGTCAACAACATCTTCAATGACATCATTCTCATCAAATTTAA
CACCATCCAATAAGCTTTTGAGTAATCGGACAAAAACAAAAGCACTTGAT
GTTTGAAGCTTCCCTTCATAGGTAGTCATCAACAATTTCTCCAAATAATG
ACCCATAAATTCTTTTTCATCTATTGATTTTACAATATTTCCAATGTTGC
CATTCTTAAAATATTCgtataaataatttttgatttttaataatGATATT
GCTGTACAGGACAACTCAAATGAGACTTTCTCTATACTCCGGCTACGCTG
ATCAACAATTCTTCTCATTAAAAGAGCAGTTAAATTGGATAGCACTATAA
TGAACGTTTTCCCCCCGCAGCCTCCACGATTTAACACAGTTTGTATTGTA
TcttttatgatttttccaatTGGATGTTTGACCTCTAAGTGTTTCAATAT
GGTGCCACAATACTTGGTAAGGTAGACAACTCCGGTATCACTTTTCAATA
ACACATCTTTACCATTTGGTCCAAAAGACGGTTGAAGTATAAGTCGAAAT
TCTCTTAGGACTGTACTTGCAGATTTTAGTCCTTCTGCCAt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047687-exon-scaffold_133-1491911889:134330..136298 | TCONS_00047687-exon-scaffold_133-1491911889:134330..136298 | Clytia hemisphaerica | exon |
| TCONS_00047687-exon-scaffold_133-1510915933:134330..136298 | TCONS_00047687-exon-scaffold_133-1510915933:134330..136298 | Clytia hemisphaerica | exon |
| TCONS_00047687-exon-scaffold_133-1575043694:134330..136298 | TCONS_00047687-exon-scaffold_133-1575043694:134330..136298 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_133 | supercontig | scaffold_133:134330..136298 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005524 | ATP binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005524 |
ATP binding |
Blast
The following BLAST results are available for this feature:
|
