TCONS_00048327 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048327
Unique NameTCONS_00048327
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1516

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048327 ID=TCONS_00048327|Name=TCONS_00048327|organism=Clytia hemisphaerica|type=transcript|length=1516bp
TTTTACAACAAAGAAATATTTGATGTTCACTTCCAGGAAAAAGGCATCAT
ATCATGATTTCACGGGTTATTTTTCAAGGGAATTTCGAATATTCTGCAAT
AAATTGAATTGTAGAGAGTGAAGTTACTGTTCACAATATGAGAATGATAT
CTTCATAATAAATAAGTGGTTTCGTGAAACTTTTCCATTTCTTTCACCTT
CAGCGCAATGTGACCGTTGTCAGTACAGTTTGGACTTCCAACAATACGAA
GGGTCCACTCACAATGATTACGAACATATTACATCTGACGAGTGTATGCA
AAAATGCGAAGAGGACGCCGATTGCATTGTGGGAAATTGGTTCCCAAAAG
ATGATCCCTGGGAAGAGAGAGATCATTCACTTTGTCGTTTATTCAAAAAG
AGTGATCACACTTTGAAGTTTTCTGATGATGGTGATGAAAATACGGAAGC
CAAACTGATCCGGTGTTCTAAGAAAGatgaCATTGATGATATTGAGCGAT
GTTTTCTGGATGAACGATTCACACGACATTGCGGAGCAGCTTTACGATAC
AGTTACGGCAAGTCGTATGAAAATTGTCGCCAGGAGTGTAACGACCGTGC
CGATTGCCAAATTGCACACTGGCACCCGCCCTATCAAATCTGGGATGACG
AGGCTCGATCTGTTTGCTTcttattttctgaaaatgctgaACGGTGCGAT
TGGGGTGGAGCAGAATTGATTTCATACCACCCTGGTGCTCAAATGATCCG
atgcaaagaaaaaaTTGACACGGAGATACGATGTCATTTCAGCGAAGATC
TTCACCGACAATGTGGAGAATATCACAGTTTGTTGTACGCCTTGACAGCT
GAACAATGTCTTCAAAGATGTGACGAGTCTGCCAACTGTATCACAGgtCA
CTGGCACCCTCCTCGTCAGATTTGGAGTGACGAGGCGCGAACAGTATGTT
TTTTGTTCAAGAGAGACGATATTAATTTACACCCTTGTCCATGGGGCGAC
GAAGCCAAGAACTCAGCACACCCAGGAGCCAAGATGATTAGATGTTCAAA
TAAAAaaaatgggcCAATCGAGAGATGTACCATGAGCTACGATTTTTTGC
GTCATTGTGGAAACGCTTTAAAATACATCTATGGTCAAAGCCCTGAATAC
TGCCGACAATGGTGTAATGATAATAAGAAGTGCCATGTAGCACACTGGCA
TCCACCTTATTCAATATGGGGCGATGAAGCTCGCTCGGTTTGTTTCGTGT
TTCCCCATGGGACTCAAAGTTGTGATTGGGGTGGTGCAGAACTGGGAGAT
TACCATAAAGGAGCTCACATGGTTCGATGCATGTACCAAGAATAGCTTAC
TAAGCTTTCTGACCAGTATTTTTTTAAGGCCTGTATATATGGGAAAcgtg
aaaaacgttttttctttatttttctatttttctagcTTTGTATGTATTTA
ACTATTTGGTATGCTTCGTAAGAATTTCAAATATACATTTACCATTTAAA
AATTGTTGATCAGCTA
Run BLAST on NCBI

transcript from alignment at scaffold_142:892420..895868+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048327 ID=TCONS_00048327|Name=TCONS_00048327|organism=Clytia hemisphaerica|type=transcript|length=3449bp|location=Sequence derived from alignment at scaffold_142:892420..895868+ (Clytia hemisphaerica)
TTTTACAACAAAGAAATATTTGATGTTCACTTCCAGGAAAAAGGCATCAT
ATCATGATTTCACGGGTTATTTTTCAAGGGAATTTCGAATATTCTGCAAT
AAATTGAATTGTAGAGAGTGAAGTTACTGTTCACAATATGAGAATGATAT
CTTCATAATAAATAAGTGGTTTCGTGAAACTTTTCCATTTCTTTCACCTT
CAGCGCAATGTGACCGTTGTCAGTACAGTTTGGACTTCCAACAATACGAA
GGGTCCACTCACAATGATTACGAACATATTACATCTGACGAGTGTATGCA
AAAATGCGAAGAGGACGCCGATTGCATTGTGGGAAATTGGTTCCCAAAAG
ATGATCCCTGGGAAGAGAGAGATCATTCACTTTGTCGTTTATTCAAAAAG
AGTGATCACACTTTGAAGTTTTCTGATGATGGTGATGAAAATACGGAAGC
CAAACTGATCCGGTGTTCTAAGAAAGGTTTGTAAGATGTGTCCTTTATAC
TCCGTTTCCAACCGCTATCAGTGTCAAGCCGGTTTTCCCAAGAATTTCTG
ACGGTCCTTTATGACGACCAACATTGATGTAAATAAAATCTTGGATAGGA
CAGGGCgagagaaaaagtattttatcGATGAACCAAAGAATACTTCAAGT
CCCCGTCCATTTTGATCGCAGAATCTATATACATGACATTTATATATGTA
AGAATCTTTATTGTAAAGACCTTATAAAGCTACCagtttgattaaatttt
ttttttattagatgaCATTGATGATATTGAGCGATGTTTTCTGGATGAAC
GATTCACACGACATTGCGGAGCAGCTTTACGATACAGTTACGGCAAGTCG
TATGAAAATTGTCGCCAGGAGTGTAACGACCGTGCCGATTGCCAAATTGC
ACACTGGCACCCGCCCTATCAAATCTGGGATGACGAGGCTCGATCTGTTT
GCTTcttattttctgaaaatgctgaACGGTGCGATTGGGGTGGAGCAGAA
TTGATTTCATACCACCCTGGTGCTCAAATGATCCGatgcaaagaaaaaag
taagaaaatttttttatgaatttctaTATGTACATTATCTTTTCCGATTT
TTCTGGAAACACAGTACTTCTTTTTAGCTAAGAAAAGTCCATAAACTGCA
ATCGGCGTCGAAATATATTAGCACTTTtaggtattttaacgtttttcaga
atttaaagatcggGTGAGAGTTGCAacttcagtacttccactttgtttca
ttggatttttcgatttggaaGGCGTTAAAGTggtttccaggctatattct
cagccttattagaacatttttgagtatatttttgagtcttaagtctcatg
ttaaaactcagagttaaaactttcCAACCGTACTTTAAAGTAGTTAAAAA
TTACTTGCAGTTTTCaaatttgagggaattcccattttgtgccaaatatt
acgGTGGGGATTGTGGTcgattttgacgattttgacGCTATACAATTATT
GGACACAATATATCCAAAACAACTGAAAATGGTCTATATCTCTTCTTATG
GTTTGTAGTTGACACGGAGATACGATGTCATTTCAGCGAAGATCTTCACC
GACAATGTGGAGAATATCACAGTTTGTTGTACGCCTTGACAGCTGAACAA
TGTCTTCAAAGATGTGACGAGTCTGCCAACTGTATCACAGgtacgacgtt
gtttcaacgtccatttaacgttatatggatgttgtgaatattagaaaaac
gttgaaacgacgttgtgtatCAGCTGGGAGAAAAGAATCATTGAGATTTG
CACCTTGAAATCGTTGATTGCTAGCATATCATTTAGCTTTTCTTGTCTCT
TTCCACAATCTGCAGCGGGCTCAATCAGACTGATTCAGGACTAAAGAAAT
TAAAATCTCACTCCCTCTCCTTCCATCATAGACCCACttggaccccagcc
ccactggaaaaataccTTACAATCTCATTCCCAGTGGGGaatcgactttg
atttcatccccattcaaaatttaatgtaaaaaattgcactccaaaaccat
ccccacggATTTTTTGACttgggaacaatagaatttttatcccattgggt
ttttcttcttttttttctttttttcaccggggctttgagacaggggtgta
tatatGAAGAATTCTCGCAtaactttgttttgtttttaaggtCACTGGCA
CCCTCCTCGTCAGATTTGGAGTGACGAGGCGCGAACAGTATGTTTTTTGT
TCAAGAGAGACGATATTAATTTACACCCTTGTCCATGGGGCGACGAAGCC
AAGAACTCAGCACACCCAGGAGCCAAGATGATTAGATGTTCAAATAAAAG
TAAGGAGATGTTTTACCTGTTtttaaaacaacaacaaaaattaccTTACA
GTTATAGAAAATAAggaacatcataagaacattttatttgTAACGTTTGT
TTATAAAGTCTGTTTGCAACGATATTCTTATCGCCACCAATCTTATTGGT
AGaaaaagatgtcacatgactttccgtggtaaagaatgaaaattgcattc
ctttttttttcagaaaatgggcCAATCGAGAGATGTACCATGAGCTACGA
TTTTTTGCGTCATTGTGGAAACGCTTTAAAATACATCTATGGTCAAAGCC
CTGAATACTGCCGACAATGGTGTAATGANACAGTATGTTTTTTGTTCAAG
AGAGACGATATTAATTTACACCCTTGTCCATGGGGCGACGAAGCCAAGAA
CTCAGCACACCCAGGAGCCAAGATGATTAGATGTTCAAATAAAAGTAAGG
AGATGTTTTACCTGTTtttaaaacaacaacaaaaattaccTTACAGTTAT
AGAAAATAAggaacatcataagaacatttttgtaaCGTTTGTTTATAAAG
TCTGTTCGCCACCAATCTTATTGGTAGaaaaagatgtcacatgactttcc
gtggtaaagaatgaaaattgcattcctttttttttcagaaaatgggcCAA
TCGAGAGATGTACCATGAGCTACGATTTTTTGCGTCATTGTGGAAACGCT
TTAAAATACATCTATGGTCAAAGCCCTGAATACTGCCGACAATGGTGTAA
TGATAATAAGAAGTGCCATGTAGCACACTGGCATCCACCTTATTCAATAT
GGGGCGATGAAGCTCGCTCGGTTTGTTTCGTGTTTCCCCATGGGACTCAA
AGTTGTGATTGGGGTGGTGCAGAACTGGGAGATTACCATAAAGGAGCTCA
CATGGTTCGATGCATGTACCAAGAATAGCTTACTAAGCTTTCTGACCAGT
ATTTTTTTAAGGCCTGTATATATGGGAAAcgtgaaaaacgttttttcttt
atttttctatttttctagcTTTGTATGTATTTAACTATTTGGTATGCTTC
GTAAGAATTTCAAATATACATTTACCATTTAAAAATTGTTGATCAGCTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030756XLOC_030756Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048327-exon-scaffold_142-1491911889:892420..892895TCONS_00048327-exon-scaffold_142-1491911889:892420..892895Clytia hemisphaericaexon
TCONS_00048327-exon-scaffold_142-1510915933:892420..892895TCONS_00048327-exon-scaffold_142-1510915933:892420..892895Clytia hemisphaericaexon
TCONS_00048327-exon-scaffold_142-1575043694:892420..892895TCONS_00048327-exon-scaffold_142-1575043694:892420..892895Clytia hemisphaericaexon
TCONS_00048327-exon-scaffold_142-1491911889:893181..893468TCONS_00048327-exon-scaffold_142-1491911889:893181..893468Clytia hemisphaericaexon
TCONS_00048327-exon-scaffold_142-1510915933:893181..893468TCONS_00048327-exon-scaffold_142-1510915933:893181..893468Clytia hemisphaericaexon
TCONS_00048327-exon-scaffold_142-1575043694:893181..893468TCONS_00048327-exon-scaffold_142-1575043694:893181..893468Clytia hemisphaericaexon
TCONS_00048327-exon-scaffold_142-1491911889:893978..894109TCONS_00048327-exon-scaffold_142-1491911889:893978..894109Clytia hemisphaericaexon
TCONS_00048327-exon-scaffold_142-1510915933:893978..894109TCONS_00048327-exon-scaffold_142-1510915933:893978..894109Clytia hemisphaericaexon
TCONS_00048327-exon-scaffold_142-1575043694:893978..894109TCONS_00048327-exon-scaffold_142-1575043694:893978..894109Clytia hemisphaericaexon
TCONS_00048327-exon-scaffold_142-1491911889:894610..894768TCONS_00048327-exon-scaffold_142-1491911889:894610..894768Clytia hemisphaericaexon
TCONS_00048327-exon-scaffold_142-1510915933:894610..894768TCONS_00048327-exon-scaffold_142-1510915933:894610..894768Clytia hemisphaericaexon
TCONS_00048327-exon-scaffold_142-1575043694:894610..894768TCONS_00048327-exon-scaffold_142-1575043694:894610..894768Clytia hemisphaericaexon
TCONS_00048327-exon-scaffold_142-1491911889:894983..895003TCONS_00048327-exon-scaffold_142-1491911889:894983..895003Clytia hemisphaericaexon
TCONS_00048327-exon-scaffold_142-1510915933:894983..895003TCONS_00048327-exon-scaffold_142-1510915933:894983..895003Clytia hemisphaericaexon
TCONS_00048327-exon-scaffold_142-1575043694:894983..895003TCONS_00048327-exon-scaffold_142-1575043694:894983..895003Clytia hemisphaericaexon
TCONS_00048327-exon-scaffold_142-1491911889:895429..895868TCONS_00048327-exon-scaffold_142-1491911889:895429..895868Clytia hemisphaericaexon
TCONS_00048327-exon-scaffold_142-1510915933:895429..895868TCONS_00048327-exon-scaffold_142-1510915933:895429..895868Clytia hemisphaericaexon
TCONS_00048327-exon-scaffold_142-1575043694:895429..895868TCONS_00048327-exon-scaffold_142-1575043694:895429..895868Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_142supercontigscaffold_142:892420..895868 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	201.173	184.065	132.275	119.569	12.6493	34.0543	25.1041	22.6941	0.233815	0.345153	0.0683117	0.124058	0	0	0	0	0	0	0	0	0	0	0	0	0.0698183	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048327 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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