|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048330 ID=TCONS_00048330|Name=TCONS_00048330|organism=Clytia hemisphaerica|type=transcript|length=1325bp
tttttttgcgtggaaattattttaatgaatattttgatttcaaaaaatat
gtctAGAAGGGTAGTAGCTCTCACCTTATTCAAGTTGTTTGTATGGGGTT
TTATCACTTAGACgtattgtaaaaaaattcaaggtaGCTCGTATGggaGG
ATAGATTTTGCAACAAGTACTGGTAAACTGTTACACATTGAACAACATAT
GAAAGAATATGGCTCCACCATCATCGAACCTCGTGAAATTCTGGTTATTG
TGCAAATTGAAAACAAAGGACAACTGGGTTTGAAATATAATCCGCTTTTC
ACAGCCACAACAGAAGAAGATATCAGCCTGAAAGAGAGTATTGAGCTCCA
AAGCACATACCGAGACCCTCATCAACCCAAACatcagaaaaacaaaaaga
agccATTGGTCAGAACCACTACATGGAGGTCTGCCAGGCGGATTGCAGTT
ACCACAACCAAAGCTCCACCAAAGACAGCAAATGTACTTTTAAGAAGACA
AGCTTCAAATCTCGCTCCATAAAAAGTGAAAGGAAATTAAGTGGCACAGT
GAAGCACGCATCATTAGTTATACTGCGATGATGTTTACGTACcattagaa
aagaaaatcattatCCACCACTTTAAACCAGACAATACCACTGAACCAGT
ATGACAATTGATGCTAAAGCAATTATATAGGAGAACAGAGATTGAAGATT
ACATACCtcctaaaaataaatatacccaaattcaaatttgaaaacgtgAC
GAGTTTGCGTGAGGAGATGGAAGCAATTGATGTCTTTTAAGAAAAAGGGA
TACCATatgttttaaacaaaacaataaGTTTCAGCTTCTGCAATACTGGT
GAAAAGGAGAATGTAAACAAGGAGAATTTTCATTCTGATGAAGAAAAAGC
AAAGGAACAAACAGTAACAACTTCAAGTCAGCAAAATCAGGAAAGCATTT
GCCGGACCCATGTTTAGATGTGTTTCTAATTTGTCAAGTTACGTaatatc
cgccattatggaagcaaaagTTCGATCAGCGGAAGTGATCGCCACTACAG
ATTTGAAAACctgtttccataatggtggaagtCACGAAACTTAAGGAAAC
ATGAAAACCTATATAGCGTGTTAATGCTTATTGACTTGAAGGACACGATG
ATATATGCTACTTGGTCAACATTAAGGGACAAAAACCTACATGATTCAAT
GTGGTTTTATCAAGTATATACAATCAAAActtatcaaaatatttacagAT
TCTTCattacaataaaataaaaataatgcattaacttaagtacacgtttt
ttataagaacaaactatgtaaaaac Run BLAST on NCBI transcript from alignment at scaffold_142:917216..924014+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048330 ID=TCONS_00048330|Name=TCONS_00048330|organism=Clytia hemisphaerica|type=transcript|length=6799bp|location=Sequence derived from alignment at scaffold_142:917216..924014+ (Clytia hemisphaerica)
tttttttgcgtggaaattattttaatgaatattttgatttcaaaaaatat
gtctAGAAGGGTAGTAGCTCTCACCTTATTCAAGTTGTTTGTATGGGGTT
TTATCACTTAGACgtattgtaaaaaaattcaaggtaGCTCGTATGGTACT
GTAATAGATAtatcactgggcgaaataagagatttccaatcctggaagta
tcttgaaaatatgaaaaaattaaaatatgatACTTCCATATACATTTGTT
ATGGAAATTtagaaatctcttatttcgcccagtgcatTATTTTCataact
agccataactttcattaaggtgccaccgcagcaaaacgaacacatagagt
tgaatttgcgttcaaaaggaatgatcttagccctacagtaattttggtta
aaagtgacctctcatctgagacaaaattctttcaattgctaacaaatgtg
tcaagggagtgatttacagtctacttagagtgacattcgtgccttgtctt
acacgttttttataagaacaatttcataagaatacgaggctgaaatttgg
ctaaaacctaagaacaaattaagaagaatctgagcctcagatttcagaaa
ttactgcaAAGTACAGGTTTCCATTCTCCTTTatattaatattgacattt
aagcctgaaaaactcCTGAACTAACCTGAAGATAATGcacttcatatgtt
attttactaatgtacacgtttagcaacataactgttcgatACTTTCAGTA
GAGTAATATTTTaaacctatgaagagcgcttaataactatttgtggtata
aaaaaggaatttcccagaaaaggaNctatgaagagcgcttaataaatact
tgtggtataaaaagggaatttcccagaaaagggaatttccttagattcat
taactctccagggataagaaaaagacaaactgagatttcaaaataagtaa
tcagatcaaaataactccggaaaagtctttttgatgatgataaaacaata
gagagaccgtaagataagaatgctaccgttaagtggaactaaaatactga
aaaacgcacAAACGCaaacgcaaaattatgagatgtttgcccaacttctt
tatgcgtgaagctatgaatgccatcgggagctttaggctccctgcggtgg
caaCAACAAGCTTAAAACTNagctatgaatgccatcggGAGCTTTAGCTT
CCCTGCGGTGGCAACAACAAGCTTAAAACTTCAATAAACTCATTATAAAT
CTGTGTCTGTCTTTCACTCTTAAGTACAGTTCTTTACGTATGATTCCGGT
AAATTTTACAGTTGACTTTCTCTAACTCGATCAAAAACTTTCTTCGAATT
TGAGAAAGGTTCgtattacagagagtaattcaTTACACAGGAGTGCTAAG
GGGACGGATAGAGGGGACCAATTTTTTAATCCGAATTAATAGAGATTCAA
ATTAGAGAGGGTCAACTGTACTTCAAATGATATCAAAGACTTTCTACtat
cagaaaataaaaacaaagaaagcttGCTTAAACAGGAAAATGGCAAATTG
CGCCACCACACAAAATGTTTCACAAATTTTGACCTGTGACGCGGACCAAT
TCACGCCGTATGTTTTCGACCCTGGCACCCAACTGGCGTTCAAGATTCGT
TCTTTGACAATCATCCCAGTATGTGTAACGGGAATCTGTTTGAATCTTGT
TGTTTCTATGGGAATGGCTACGCATCGCCGTATGAGAGATTTATCGCTCA
ATAAATTTCTATTGACCTTGACAACTGTTGatttcatgatatcaatgata
gtACTGCCTGTATATATCCATTACAACATTTTGCTATCCGAAGGACATTT
TTGCTGTATCGTTGGAAACGTATTACTGAGTACAGCATCTTCCCTCACAA
TGATGTCTATAACTTCTATTGTATTCATCAATATTCAACTCTATTTGGCG
ATCCTTAAACCGTTCATCTACAGTAGGAAGTTTAACCAGAAATTCACATT
ACCGATCTTAGTGTCCATCAATGTGTTTTGGGCGTTATCCACAATCACAG
CTCTTTTTGTCATTCCTACATGGTGGTCGACATTTCGAACATCGGCCAGT
GGATTTGGTTTCTTAtgctatattttgattttatttctaCATTATTTCAT
TTGTAAGGAAAGCCGTCATATCCGGGAACGTTCGAAAAGCAATACAACAC
TTTCGTGCAATAAGATAACAAAGAAAACTTTACGGCTGACGACTTCTGTT
TTGATTTCATTCGGGCTATGTTATCTCCCGTATATCGTAATGTCCGTATA
CACCATGGTAGTACCTATTACACCTGAATTTAACACTTATTTTGACACCT
GGGCTGAATATATTGCTATGATGACATGTGTTTTGAACCCTATTTTATAC
TGTATTCGATTGGGATCTGTGAGAAGAAGTGTTTTGAGATTATTTGGATG
TGGgcgtgttatgaatttgaggtCGTTCAGTATGAATACTTTCTCTGTGA
AAGAGACTGGACCCAACAATACAACCACGTGAGGAAAATGTATTCTGTGA
AGAAAATGTATTCTTAAGAATCAAATACACAATTCATTCAGGCGATAAAT
TCAAAGTTGGATAAATTGTACGAAAAAGTACTTGAAAGCTAATGGTACTA
CTTTAGAAAAAGTTATATCATGAAAAACCCATCAGTTTTCGCATTTTTAC
AGCTAAGGAAAGCTACTTACCCATAATaatttatgatgtttttaattctA
CTAATCTAATCTCACTAGAAATAAATATCCTAAGATAACGAACTCCAATC
TTCGCAATTTCCCTCagaaatattttaaagaatacacgctttttttttat
aagaatggtgtaaatgcatttcatcatggatattcttaacttttttggga
aaatcatcctaaaatattcttatagcaCATTCTtaaggttaggatcctaa
tttatactagatttaacatttagttcatacgtctcaagcataaaatggca
cttttgtaaaaggagtgagccttacttggggataattgataatttataat
gaaaatgctcttaaaatgactttcttagctttagtagcaaaattcaatga
tggtgatattcttagcatattcttagttttttggccattttcatcataga
cattcttataaagtgtattcttatgaaaaaagcgtgtaagatGATAGGTG
AGCACTCttaattttcaaagtttaaatcAGGTTAATTTTACGTTGCGTTT
TTGTTGAACTACCAGGTATCTTGAAAAAACACAAAAGAGAATAGTATTCT
GATAAAAAAGATATACTAAGATATTTAAAGATATGTTAATGAAATAATAT
GATATCAAAGATCAGGCCAGTGAGAGAGAACGCTACTCAAACTGTTTCCT
TTCTTTCTCTAGAGTAAACTTCTCTCCCTAAGCATCGGTAAACTGTTACA
CATTGTTTATGCTTTACTGTTCGAAAGAGATTATCGATAATCAGGACCAA
TGAGCTCTTGTAACAGCTTTCTTATTGGTCCTAAAATGTGGAAGTTTTTG
CGTCTAAACTAACGGGAGGTCGTTATTGTGACCCAAGCAGttattaccca
tgattcatctCGACCGTAAAATGAATGGATGTCCAATTGACTTTGCTTTC
CTTTGTACTTCAGGAAGGATAAACTTTTCCAtaaacacacccctgtctca
cagccccactggaactTTCTTCCTATTGAAATtccgatggggatagaaat
tatatcgttcctaggttaaaaaatccagtggagaTGGGTTTTGAgtgtaa
ttttttaaacattcattttcgaatggggatgaaaaagtcattttcccagt
ggggctgaaatttttgtcaaattttccagtggggctggggtcctagtggg
tctgtgacacaggggtgtataaacCTTTGAGCACGTTAACGGTAACACAT
CGTAAAcaagttaacttttattttgaggGAGGATAGATTTTGCAACGAGT
ACTGGTAAACTGTAACACATTGAAAATgagttaatttttattttgagggA
GGATAGATTTTGCAACGAGTACTGGTAAACTGTAACACATTGAAAATgag
ttaatttttattttgagggAGGATAGATTTTGCAACAAGTACTGGTAAAC
TGTAACACATTGAAAACaagttaatttttattttgagggAGGATAGATTT
TGCAACAAGTACTGGTAAACTGTTGCACATTGAAAATgagttaattttta
ttttgagggAGGATAGATTTTGCAACAAGTACTGGTAAACTGTAACACAT
TGAAAATgagttaatttttattttggagGGAGGATAGATTTTGCAACAAG
TACTGGTAAACTGTAACACATTGAAAATgagttaatttttattttgaggg
AGGATATATTTTGCAACAAGTACTGGTAAACTGTAACACATTGAAAATga
gttaatttttattttgagggAGGATAGATTTTGCAACGAGTACTGGTAAA
CTGTAACACATTGAAAATgagttaatttttattttgagggAGGATAGATT
TTGCAACGAGTACTGGTAAACTGTAACACATTGAAAATgagttaattttt
attttgagggAGGATAGATTTTGCAACAAGTACTGGTAAACTGTAACACA
TTGAAAATgagttaatttttattttgagggAGGATAGATTTTGCAACAAG
TACTGGTAAACTGTAACACATTGAAAACaagttaatttttattttgaggg
AGGATAGATTTTGCAACAAGTACTGGTAAACTGTTGCACATTGAAAATga
gttaatttttatttttagggaGGATAGATTTTGCAACAAGTACTGGTAAA
CTGTAACACATTGAAAACaagttaatttttattttgagggAGGATAGATT
TTACAACAAGTACTGGTAAACTGTTGCACATTGAAAATgagttaattttt
atttttagggaGGATAGATTTTGCAACAAGTACTGGTAAACTGTAACACA
TTGAAAACaagttaatttttattttgagggAGGATAGATTTTGCAACGAG
TACTGGTAAACTGTTGCACATTGAAAACaagttaatttttattttgaggg
AGGATAGATTTTGCAACAAGTACTGGTAAACTGTTGCACATTGAAAACaa
gttaatttttatttttagggaGGATATATTTTGCAACAAGTGCTGGTAAA
CTGTAACACATTGAAAATgagttaatttttatttttagggaGGATAGATT
TTGCAACAAGTACTGGTAAACTGTTACACATTGAACAACATATGAAAGAA
TATGGCTCCACCATCATCGAACCTCGTGAAATTCTGGTTATTGTGCAAAT
TGAAAGTATAATAGAACCTATAGCCTTTTGAGTTATATTCTCATCGCTAA
GTTTATAACGTCCATTAAACCTAAACCGCCAAAACAAACTCGTAGTCAGA
CCAGAGTCAAGTAaaactaaatagaaaaaaatcacaGCATTGAGACGAAA
TCTTTCAGTAGAACCTAGAATATAATTTaccatattttcatttttcactt
cCTTAGACAAAGGACAACTGGGTTTGAAATATAATCCGCTTTTCACAGCC
ACAACAGAAGAAGATATCAGCCTGAAAGGTAAGGCTCTTCAGGATTTAAA
ATGCATGATTACAATATCGCATTTTCGGTACTTTTAGTCTGGTAGTTATC
AATTATGATGGTTCATTGACTGTGATAAGTCATACCTGAAGATTTCAAGA
ATACTAAAggccaaaaacaaaatttcattcattCGTCATTTATACCCTAT
TCTTTTAGAGAGTATTGAGCTCCAAAGCACATACCGAGACCCTCATCAAC
CCAAACatcagaaaaacaaaaagaagccATTGGTCAGAACCACTACATGG
AGGTCTGCCAGGCGGATTGCAGTTACCACAACCAAAGCTCCACCAAAGAC
AGCAAATGTACTTTTAAGAAGACAAGCTTCAAATCTCGCTCCATAAAAAG
TGAAAGGAAATTAAGTGGCACAGTGAAGCACGCATCATTAGTTATACTGC
GATGATGTTTACGTACcattagaaaagaaaatcattatCCACCACTTTAA
ACCAGACAATACCACTGAACCAGTATGACAATTGATGCTAAAGCAATTAT
ATAGGAGAACAGAGATTGAAGATTACATACCtcctaaaaataaatatacc
caaattcaaatttgaaaacgtgACGAGTTTGCGTGAGGAGATGGAAGCAA
TTGATGTCTTTTAAGAAAAAGGGATACCATatgttttaaacaaaacaata
aGTTTCAGCTTCTGCAATACTGGTGAAAAGGAGAATGTAAACAAGGAGAA
TTTTCATTCTGATGAAGAAAAAGCAAAGGAACAAACAGTAACAACTTCAA
GTCAGCAAAATCAGGAAAGCATTTGCCGGACCCATGTTTAGATGTGTTTC
TAATTTGTCAAGTTACGTaatatccgccattatggaagcaaaagTTCGAT
CAGCGGAAGTGATCGCCACTACAGATTTGAAAACctgtttccataatggt
ggaagtCACGAAACTTAAGGAAACATGAAAACCTATATAGCGTGTTAATG
CTTATTGACTTGAAGGACACGATGATATATGCTACTTGGTCAACATTAAG
GGACAAAAACCTACATGATTCAATGTGGTTTTATCAAGTATATACAATCA
AAActtatcaaaatatttacagATTCTTCattacaataaaataaaaataa
tgcattaacttaagtacacgttttttataagaacaaactatgtaaaaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048330-exon-scaffold_142-1491911889:917216..917360 | TCONS_00048330-exon-scaffold_142-1491911889:917216..917360 | Clytia hemisphaerica | exon |
| TCONS_00048330-exon-scaffold_142-1510915933:917216..917360 | TCONS_00048330-exon-scaffold_142-1510915933:917216..917360 | Clytia hemisphaerica | exon |
| TCONS_00048330-exon-scaffold_142-1575043694:917216..917360 | TCONS_00048330-exon-scaffold_142-1575043694:917216..917360 | Clytia hemisphaerica | exon |
| TCONS_00048330-exon-scaffold_142-1491911889:922454..922570 | TCONS_00048330-exon-scaffold_142-1491911889:922454..922570 | Clytia hemisphaerica | exon |
| TCONS_00048330-exon-scaffold_142-1510915933:922454..922570 | TCONS_00048330-exon-scaffold_142-1510915933:922454..922570 | Clytia hemisphaerica | exon |
| TCONS_00048330-exon-scaffold_142-1575043694:922454..922570 | TCONS_00048330-exon-scaffold_142-1575043694:922454..922570 | Clytia hemisphaerica | exon |
| TCONS_00048330-exon-scaffold_142-1491911889:922772..922843 | TCONS_00048330-exon-scaffold_142-1491911889:922772..922843 | Clytia hemisphaerica | exon |
| TCONS_00048330-exon-scaffold_142-1510915933:922772..922843 | TCONS_00048330-exon-scaffold_142-1510915933:922772..922843 | Clytia hemisphaerica | exon |
| TCONS_00048330-exon-scaffold_142-1575043694:922772..922843 | TCONS_00048330-exon-scaffold_142-1575043694:922772..922843 | Clytia hemisphaerica | exon |
| TCONS_00048330-exon-scaffold_142-1491911889:923024..924014 | TCONS_00048330-exon-scaffold_142-1491911889:923024..924014 | Clytia hemisphaerica | exon |
| TCONS_00048330-exon-scaffold_142-1510915933:923024..924014 | TCONS_00048330-exon-scaffold_142-1510915933:923024..924014 | Clytia hemisphaerica | exon |
| TCONS_00048330-exon-scaffold_142-1575043694:923024..924014 | TCONS_00048330-exon-scaffold_142-1575043694:923024..924014 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_142 | supercontig | scaffold_142:917216..924014 + |
Blast
The following BLAST results are available for this feature:
|
