TCONS_00048370 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048370
Unique NameTCONS_00048370
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2060

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048370 ID=TCONS_00048370|Name=TCONS_00048370|organism=Clytia hemisphaerica|type=transcript|length=2060bp
TTTCTACTGCTAATGTGATTAAACTTGATAAGTAATGGATAATGATGGAA
AGGCACAGGATGAATTGGAACTTCGAGAAAAACAACCGCCAAGTTACCAA
TCAGTGCAGCGACCCTCATCCCCGGCCGATGAAGCACGCCGAGTTCTACG
GGGTCCTTTGGCCCCAGTTAATAACTTTTTAAACATGCTAGAAGACAACA
CtcgaaattttattcaaaaggaAAGCCAAACGGTCAAAATTGTAGCGGCT
GTTATTTTCTTGATTCTGTATATCATTTACTTTTGTTTTGCTGTAACGTT
GGATGCTGAGAGAGCGAAAGATTTGATTTATGTCACCGTTTTTGGattct
tttgtttgttttattggttgatCAAGAAGTTCTTTGGTAGAGTCATTTGG
AAATCTTGTTTGAAACCTATTGTAGCTTTCTTTGAAgccaaaagaaagat
tttcacaTGgaTACTCTCGCTAGCTTTTGTTGGTTTTTTAATCTTTTGGC
TTTGTTGGGATACGAGAAAAGATCCTGGACGATTGATTTCATTGGGTGGT
TTGTTGGTTTATATCCTCATCGGATTCTTGTTCTCAAAACAACGTGATCG
GATCCGCTGGCGTCCTGTTATATGGGGATTCGCACTTCAATTCATATTTG
GTTTGTTGATCCTAAGAACTGATATTGGTTTGAATGTATTCAAATGGCTT
GGCGATCGTGTCACTATTTTCTTGGGATTCTCAAAAGCTGGTATTGAATT
CTTGTTCAGAGGTCTCGACCAATTTGGGTTAGCGattttgCCAATCATTG
TCTACTTCTCGGCTGTCACTTACGTTTTATATTACCTTGGTTGGATGCAA
GTTTTCATCAAGAAGGTTGCTTGGATACTTCAAGTTACCATGGGAACATC
ACCAGCCGAATCGGTCAACGCAGCTGGAAATATTTTCATTGGTCAAACAG
AAGCTCCACTATTGATTCGTCCCTTCTTGGAAGGGATGACTGCATCAGAA
CTTCACGCTGTTATGACAGGTGGTTTTGCTACCATTGCCGGCTCCGTTCT
CGCCACCTACATTCTCTTCGGCGTATCAGCGTCGCATCTGCTTTCCGCTT
CAGTGATGAGTGCGCCCGCTGCGCTGGCAATGTCCAAATTAATGTACCCA
GAAACAGAAGAACCTGAGTTTACAGAAGTCGATAAAATTGAAATCGATGG
AACTGAAGAGACGAACGTGTTTGAAGCACTTGCAGTAGGTGCTTCCATGT
CTATCGGTCTTGTGGCGAACATTGGTGTTATGATTATCGCTTTCTTGTCA
GTGTTGGCTTTATTTGATGGTCTTCTTGGATGGTTTGGTGGTATGGTGGG
ATTACATGAACTCTCTTTTGAGTTCATCTGTTCATACGTTTTCATGCCAT
TCGCTTTTATCATGGGTGTGGATTATAAAGACTCCTTTGAAGTTGCAAAG
ATGTTGGGTATCAAGACCTTCCTCAATGAATTCATCGCCTATGAGAAGCT
TGGTGACATTATCAAGAATAGAGTATTGGAAAGAGGTGGCTTGACCATGT
CTATTCGTTCAGAAGTCATTGCGACATATGCATTATGTGGATTTGCGAAT
TTTGGTTCAATGGGTGTACAGATAGGTGGTATTTCATCTCTTGCACCGAG
CAAACGAACAGTTTTATCGCAAGTCGTTCTTCGTGCTTTGGTTGCTGGTA
CTTTGGCTTGTTTCATGACCGCCTGTGTGGCTGGAATTTTATATGACGAA
TCAAGATATGATGTGAGCATTAAGATACCGACCAATGGAACAAACACTAC
CTTGTTTTAAAATGGCTGGTTGCGGTAACCATGGTTGCAAAGTTTGTAAA
TACTCCAATAACCAATTAAATGACGAGCTCTATGATAATTTTGTATTCAC
GTAACCGTTTTCCTACGGGGATAAGAACCATTTTAAAAGGAATATGGAAA
ACGATTAACAGGTTTACGAAAGAACCACGTAGATTTGGGTTTAGAGGTTT
TACatttttgttaagttacgtagttaccgccattatggaaacaaacgttc
gaatctgtag
Run BLAST on NCBI

transcript from alignment at scaffold_142:455199..462921-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048370 ID=TCONS_00048370|Name=TCONS_00048370|organism=Clytia hemisphaerica|type=transcript|length=7723bp|location=Sequence derived from alignment at scaffold_142:455199..462921- (Clytia hemisphaerica)
TTTCTACTGCTAATGTGATTAAACTTGATAAGTAATGGATAATGATGGAA
AGGCACAGGTATGAATAAATATCTCCTTGTTTACCTTTTTGGCCCCTTTG
TTTTGTTAAAGTCGCCCCTTAATCATTGCCCAATTTCGAGCTTACACCAA
TGAAGACCATAAATAACACCAAAATCTTCAACATCTCTAAACAGGCTTTA
AAATACTGAATATTGGCTTGAATTCTCCTTAAAATGTTAAAACTTTATAA
AACTTCTGTTTGTAAACTTTTGAAAATTGTATTGAGAATTATAATGCTTT
GCGAGAAATTTTGGACGTAAATGCTTAAAAGAATGGAATCTCCTAATAAC
CACATTCAACTCTCGTGAAAAGAATAAAAAAAGTCGCCGTTTTTANCCCC
CCCCCCCCGGGGATTTACCCTCAATACACCCTCTCTATGTCTTAAGTTTC
CTTCTCTTGGATTATTTAACTGTTTGTATAACTGCACTTACTACAAGGTC
GTGTTACAAAGTAACCTTTCATTTGCGTCACTTGTGTGATTTTTCTTTAT
CGTCAAGACTGGACAGTCGCTTATAATCCATGTAATAGAGAATACACTTG
ACTCTAATTCGATGTTTAATAAAGGAACTCAACAGATTTCGAATTAAAAG
AGATACGCTATTCAAGCAATAAGGAACTCAAAATCAATTTAGGTTCCTTA
CGAAGGGTAATTTTTTTCAGCTTGGGGGACCTATATTTTAGTTCAAATTG
CAGAACGATTAGATGTTTTAAAAACCTTCGGATGGATCAACTTATATGAG
AATGATTCGAATAATAGAGGTTCGAATTAGAGAGAATTGACTGTATAGGG
TCTCGTATGAAAATAAAATGTGATAAATGTTCCAGAATGATTTCAGTATG
ACAATTTGCCGCGTCCATTATTTTTGCTTGTTTTCTATCATGTTTGAAGT
GATTAGTAACAGTACAATCCTGACAAAAGTTGTTTTCCTTAATTCTCACC
TTAATTTTCCATATTTCGATAAATTTTGATTTCTTTTCAGGTAGTATTCC
ACTCATAAGCATTTTTTCAACGAGCAACACATCGCAATATAAATCGAATT
TGATCAAAATTTTCAGCCTTTTATTTTCTACTTTATATTATTTTGATCTG
CATGATCTCATCAATAGTGGTGTATCTAAGGGGAGGGCTCAAAATTAATG
GCGGAGCCATACTTCTTTAAGGATGAAGGCTCAAATCAATCACTGGGCAC
TCTGTATCAGAGTGTATCTCATGTTTATCGCTTCGTAGTACACTCTGTGC
GCTTTTTATTCCCGTACGGAAACCTCTGCGATGAAGTATTATTTATAAAT
ACCAAACACTTCTCTCGTCGTCTCCCCTCTCTCGCCTGCATTCCATCACA
GGGGTCAGTTTGAAAAATCTCAAATCCGAAAAGACAATGACAACAGACCC
TCTACGGCAGTGAATTTTGAAATAAGCCGTAGATACCGGGTCTGTGTACA
GACTAGTCACTATGAGGCAATTCCCAATAACGCAAGCTCTATGATAAACA
TACTTTTGTACATATCCATAAAGAAATTTTTCCATCGCAAGGCTCAATTC
GTTTACATTTCTTTGTTTCCTTGATTTAATATAACCTAATGAAGATATTA
AAGTAAACCAACATATTTTACGATCATTTTTCTTTATAATTTAGGATGAA
TTGGAACTTCGAGAAAAACAACCGCCAAGTTACCAATCAGTGCAGCGACC
CTCATCCCCGGCCGATGAAGCACGCCGAGTTCTACGGGGTCCTTTGGCCC
CAGTTAATAACTTTTTAAACATGCTAGAAGACAACACTCGAAATTTTATT
CAAAAGGAAAGCCAAACGGTCAAAATTGTAGCGGCTGTTATTTTCTTGAT
TCTGTATATCATTTACTTTTGTTTTGCTGTAACGTTGGATGCTGAGAGAG
CGAAAGATTTGATTTATGTCACCGTTTTTGGATTCTTTTGTTTGTTTTAT
TGGTTGATCAAGAAGTTCTTTGGTAGAGTCATTTGGAAATCTTGTTTGAA
ACCTATTGTAGCTTTCTTTGAAGCCAAAAGAAAGATTTTCACATGGTAAG
AACTTTTACCTTGCGTAAAGAGTAAACAAAGCTGATAAATTGGTAGCGAA
AAAGCTAATATTTAATCCGTCAGCGGTCGAAACCTCCCTTTAGCGGTCGA
ATCCCACCTTTAGCGGTCGAATCCCACCTTTAGCGGTCGAATCCCACCTT
TAGCGTTCGAAGCCCGCCTTTAGCGGTCGAATCCCATCTTTAGCGGTCGA
ATCCTGCCTTTAGTGGTCGAATCCCACCTTAAGTGGCCGTGGCCAGCTTT
AGCAGCCGAAACACATCTATGGCGGCAGAAACCTTTATAAAGGGTAGAGT
TCAGTGGAGACGCGGGCAAAAGAGAACAGGACATTTCAGGCCCGGCAAAA
CAATCATAAAGTTGGGGAGGCTGAAAGCTCAAAATGAGATACAATTTGCT
AGGAATTTGAGAAAAAAATCTCACTTGTCTCCCCGCTTCCATGGGCCTGC
ATTTTGGGCCTAAAATTTAGTCTTTGTTTTTCTTTAGGATACTCTCGCTA
GCTTTTGTTGGTTTTTTAATCTTTTGGCTTTGTTGGGATACGAGAAAAGA
TCCTGGACGATTGATTTCATTGGGTGGTTTGTTGGTTTATATCCTCATCG
GATTCTTGTTCTCAAAACAACGTGATCGGGTTAGTAAAGATATCAAATTT
CGAACTTGGGGGTTAACCAGAGTAATAAATATATTCTTAGGTTTATAGTG
GAGCCTCCTTAACTCCAACCTCTACGCAAATTCTTTTGAGATTTAAAATG
GTTTGGCATTTTGAGATAAGAAACCCTCTTTAACCTCAAAAAGAAACTTC
AGTGCTTATTAGAGTTGTAGTATTTATTCTATAATACAGCTGTTACCAAA
ATAAAATCAGGTACAGAAATACGTTTTCGCATCGGTAAGGTCTTCGTGTA
TATTGTTTCCGGAGCCAGAAAACAGGGCAGCTTCGTGTTGAAAAAGTGTT
TCGGACTTTTTTGATTCGAAATGATGTCGAACCGTAATGTCTGAACATGG
TCTAATATTTCAAAGATTATCTTCCGTAAACCGTATAATTTAACTGTATT
ATCATTTAGATCCGCTGGCGTCCTGTTATATGGGGATTCGCACTTCAATT
CATATTTGGTTTGTTGATCCTAAGAACTGATATTGGTTTGAATGTATTCA
AATGGCTTGGCGATCGTGTCACTATTTTCTTGGGATTCTCAAAAGCTGGT
ATTGAATTCTTGTTCAGAGGTCTCGACCAATTTGGGTTAGCGGTAAGTTA
AGTTAACTTTAACCCCATTGACTTCCAAGCCCGAAGGACTAGACATGAGT
CTCCTGGATTAGAAATGAAGCCACATATTTCCCCTTCTAAACGCGTGACC
CACGTGTTTTCCACACAAACGCTAGATTGAAAGTAAAATATAACGCCAGA
TTTCGAAAAATATGCCGCGTGAAAACAAAGAAAAGGCTAGATTTAATCCG
TCATTCTAATAGCGGCGCAAACCTTAAGGCTTCACTTTTTCTTGCTTGAG
AAAGGTTGAACATTCATCTCTAAAAGCCCCTGGCTTTAAACTCAATATAT
ACACCCCTGTCTCACAACCCCCGCTTTTCCCATAGTGGAGATGAAGATTC
AATTGTTCCTTTCCATATGAAATTTTTTACTTTATTTAATTTTTGTTTTA
GATTTTGCCAATCATTGTCTACTTCTCGGCTGTCACTTACGTTTTATATT
ACCTTGGTTGGATGCAAGTTTTCATCAAGAAGGTTGCTTGGATACTTCAA
GTTACCATGGGAACATCACCAGCCGAATCGGTCAACGCAGCTGGAAATAT
TTTCATTGGTCAAGTAAGTCACCATGGTGTTCTAGAATTCATGCTATTCA
TGATGTAATATTTTCTACGGAAATACCTTGGCTTTTGCCAGTAAAATATC
TTATCAAAATCTTATCTTTCCTATTTCATTTCTAATTTTAAATTGACCAC
TACTGGCAAAAAACAGGGGGTTTCCTTAGAAAATACTTTGTTAAACCCCC
AGGTTTTCTTGTTAGGTAACTCTTGATATCATTTTTTCACATGTCAGCCT
TTTATTCTATCCTGGTAGGTAAAAAAATTTGGACTAGGTGTGTCAATTTT
ATTTTTAAGTCAATAATACATTGAAAAATTTGAAGTTGTGCAACCGTTAT
ACTTCATTTGCGTTCGTTATGATATATTACAAACGAAAACCTTAATTTTT
ACGTGCGAACTTCTGTAAGATCATAACATTAAATTCGTTTCGTTCCTTTA
GACAGAAGCTCCACTATTGATTCGTCCCTTCTTGGAAGGGATGACTGCAT
CAGAACTTCACGCTGTTATGACAGGTGGTTTTGCTACCATTGCCGGCTCC
GTTCTCGCCACCTACATTCTCTTCGGCGTATCAGCGTCGCATCTGCTTTC
CGCTTCAGTGATGAGTGCGCCCGCTGCGCTGGCAATGTCCAAATTAATGT
ACCCAGAAACAGAAGAACCTGAGTTTACAGAAGTCGATAAAATTGAAATC
GATGGAACGTAAGCAATATACTAATTGAAACTTGAACGAAAAATCCCATC
TTATTTGAATTACAGTGTAGTCTCTCTAACTCGAACCTCTATAACTCGAA
TTTAGTGTTTTATCGTCCCTTCAGTTAACAATACCTTAAAACCTTACTCA
ATAACTCTATAACTCTAATAAGAAATTTCCTTTACTCAACAAATTTTTCG
TTCCCCGTCCGAAGTTGTTTTACCTCGGAAAATTTTTTTTGCCAATTATC
AAATTGCATTGACTTTTTTTTTCTACGAAATTTAGTGAAGAGACGAACGT
GTTTGAAGCACTTGCAGTAGGTGCTTCCATGTCTATCGGTCTTGTGGCGA
ACATTGGTGTTATGATTATCGCTTTCTTGTCAGTGTTGGCTTTATTTGAT
GGTCTTCTTGGATGGTTTGGTGGTATGGTGGGATTACATGAACTCTCTTT
TGAGGTGAGTACAATAAACTACATACACCTTAAAAACGCCACAAAGGGAT
TGTGTTCAAAACACAAATTCCCTAGTATAGCAGATTCATGTAAAAAAGTC
ACGAAACGTCGAAACTCTGATTAGCAGAGACATGCAAAGATTACTTATTC
ATACTCTGAACATTTTGAAAAACATTTGCTTATGTGAGCAATTTTCAGCC
AATCAGAGCATTAGTCGATGTTTTTTCGCGACTTTTTACATGAATCTTTT
AATTGGAAATTCGTTTATTCACCAGGGAGGATCGACGTCACAGGGTGCCT
CTATCTGAAGAACGTTTGAACTCAATCCTAAATGGTAAACGATAACCCAT
GCTTTAAAAGTTGATGGAAGATTTTCATGTTTTGTTAAGTTACGTAAACT
CCGCCATTATGGGAGCAAACTTTCGATTTGCGTGAGGAATTGCCTCTACA
TATTCGAACGTTTGCTTCCATAAGTAATGGCGGATAAATTACGTAATTTT
AAAAAACATAGAAAACCTCATTAAAGTTGTAATCCGATGAAACTCAAAAT
ACTTTTTGTTTTCTGTTTCAGTTCATCTGTTCATACGTTTTCATGCCATT
CGCTTTTATCATGGGTGTGGATTATAAAGACTCCTTTGAAGTTGCAAAGA
TGTTGGGTATCAAGACCTTCCTCAATGAATTCATCGCCTATGAGAAGCTT
GGTGACATTATCAAGAATAGAGTATTGGAAAGAGGTGGCTTGACCATGTC
TGTGAGTATTTATTATTGTGAGTTCTACTCAATTACTTACCTTACCAGGT
CGAGCTTGCTCGGCTTGCGATGACACGTTCTCTTCATACTGTTTCCGATA
TCTTACGACATTTGGAAGGTCTTCCTTTGAGCAGCCTTCATCATCTCTTA
GTTGGCCATTGTATATTTTGTAATCGGTCTGCCTCGTGGTCTTTTCCCAT
GGAGGGACTCCCAAAATATTACCTCCCAAAATATTACCTCCCAGTTAGGC
TTTCCATACCGTGGCATAAAGTTAGAGCATTCCGCTTCGGTGCGCAAGGT
TGTGGGTTCAGCCTTAGATTTGCTAAAAGTTATGCAAAAACAAAACAAAA
AAGTAAATTAGACAAACTTTAGTACTTTATAACTTTCTGCCTGATGTAAA
CAATTAAATAGAAAGGTCACGAGAGTAAGCGGGGAATTCCAGGGAATGAA
GTGGGGTCCTACCTGCGTAAAGACAGTTTAGAAAAAGGGAGCCTTTACAA
AAAAAATAATAATTAGGTGTCAGCTCACCTATGCGTGTATATGCGATGCC
CATTGACAAACACTTTTGCTTTTACATTTTGTAGATTCGTTCAGAAGTCA
TTGCGACATATGCATTATGTGGATTTGCGAATTTTGGTTCAATGGGTGTA
CAGATAGGTGGTATTTCATCTCTTGCACCGAGCAAACGAACAGTTTTATC
GCAAGTCGTTCTTCGTGCTTTGGTTGCTGGTACTTTGGCTTGTTTCATGA
CCGCCTGTGTGGCTGGTAGGTTTCAGCTGTATTTCTATCATTTTTGAAGT
CCTTTTTTCTAGAGGAACCTTTGGTTTAAATTTTTCTGGGTTCAAATCTC
TTGAAAAAACAGTAAGTGTTTCTCTCTGAAACTTTTCCACCTCAAGTGTT
TTCAAAGCTAAATACTATTAAATTAGATTAGAATCAAGCACCTTTCGGGT
AACTAACATAGACTAGTAAACTAGTCGGTTATTTATTACTTATAACCTTA
TAATAAAACTGTCAATCAAATAATGTAAAAACTAATTAAATATTCAACGC
GCGTGAGAGAAAAGGAAAATAACCGACTAGAAGCTACTTCCAACGCCTTT
TTTTCTTCACCTAAAATCGTAAGGAGAGACATACAGATTTCTGTATGTCT
GACCCGTGCGGGATTGCATTTATTTTTCTTTCTGTTTATTGCGTTTTTAG
AAAGGCTCATTTATTTATATGTTCCCATGTTCAATGTTACTATGAAATAT
CATTTAGTCAAAAAAGTTGGATGGATTCTCAAAAAACCTAAAAAAAGTTG
TAAAATTAAACAACGTTTTTTGAGGGAAGTAGCTTCTAGTCGGTGAAATT
CAGAAAAGAGACGCAACTTCACCCCTTCGATTCTTTTTATTTGCAGCTTG
ATTTTTTGTATATGGGTCTGTTTTCAACGACTAGTTTACTAGTCTATAAC
TAACATTGATGTAAGATTCCAATCCTTCTGTAGTTCGAACTTAAACACCC
TGTTATTCAAATGTTTGTCTAATTTAATTGTTTTATAGTTTCTGTCCCTT
TAAAAACAGATTAAAGGGAGTCTTCAAATTCCGTTATTAATTTCAGGAAT
TTTATATGACGAATCAAGATATGATGTGAGCATTAAGATACCGACCAATG
GAACAAACACTACCTTGTTTTAAAATGGCTGGTTGCGGTAACCATGGTTG
CAAAGTTTGTAAATACTCCAATAACCAATTAAATGACGAGCTCTATGATA
ATTTTGTATTCACGTAACCGTTTTCCTACGGGGATAAGAACCATTTTAAA
AGGAATATGGAAAACGATTAACAGGTTTACGAAAGAACCACGTAGATTTG
GGTTTAGAGGTTTTACATTTTTGTTAAGTTACGTAGTTACCGCCATTATG
GAAACAAACGTTCGAATCTGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030775XLOC_030775Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048370-exon-scaffold_142-1575043694:462864..462921TCONS_00048370-exon-scaffold_142-1575043694:462864..462921Clytia hemisphaericaexon
TCONS_00048370-exon-scaffold_142-1575043694:460827..461227TCONS_00048370-exon-scaffold_142-1575043694:460827..461227Clytia hemisphaericaexon
TCONS_00048370-exon-scaffold_142-1575043694:460193..460334TCONS_00048370-exon-scaffold_142-1575043694:460193..460334Clytia hemisphaericaexon
TCONS_00048370-exon-scaffold_142-1575043694:459580..459762TCONS_00048370-exon-scaffold_142-1575043694:459580..459762Clytia hemisphaericaexon
TCONS_00048370-exon-scaffold_142-1575043694:459009..459170TCONS_00048370-exon-scaffold_142-1575043694:459009..459170Clytia hemisphaericaexon
TCONS_00048370-exon-scaffold_142-1575043694:458314..458570TCONS_00048370-exon-scaffold_142-1575043694:458314..458570Clytia hemisphaericaexon
TCONS_00048370-exon-scaffold_142-1575043694:457868..458036TCONS_00048370-exon-scaffold_142-1575043694:457868..458036Clytia hemisphaericaexon
TCONS_00048370-exon-scaffold_142-1575043694:457121..457300TCONS_00048370-exon-scaffold_142-1575043694:457121..457300Clytia hemisphaericaexon
TCONS_00048370-exon-scaffold_142-1575043694:456357..456537TCONS_00048370-exon-scaffold_142-1575043694:456357..456537Clytia hemisphaericaexon
TCONS_00048370-exon-scaffold_142-1575043694:455199..455525TCONS_00048370-exon-scaffold_142-1575043694:455199..455525Clytia hemisphaericaexon
TCONS_00048370-exon-scaffold_142-1510915933:462864..462921TCONS_00048370-exon-scaffold_142-1510915933:462864..462921Clytia hemisphaericaexon
TCONS_00048370-exon-scaffold_142-1510915933:460827..461227TCONS_00048370-exon-scaffold_142-1510915933:460827..461227Clytia hemisphaericaexon
TCONS_00048370-exon-scaffold_142-1510915933:460193..460334TCONS_00048370-exon-scaffold_142-1510915933:460193..460334Clytia hemisphaericaexon
TCONS_00048370-exon-scaffold_142-1510915933:459580..459762TCONS_00048370-exon-scaffold_142-1510915933:459580..459762Clytia hemisphaericaexon
TCONS_00048370-exon-scaffold_142-1510915933:459009..459170TCONS_00048370-exon-scaffold_142-1510915933:459009..459170Clytia hemisphaericaexon
TCONS_00048370-exon-scaffold_142-1510915933:458314..458570TCONS_00048370-exon-scaffold_142-1510915933:458314..458570Clytia hemisphaericaexon
TCONS_00048370-exon-scaffold_142-1510915933:457868..458036TCONS_00048370-exon-scaffold_142-1510915933:457868..458036Clytia hemisphaericaexon
TCONS_00048370-exon-scaffold_142-1510915933:457121..457300TCONS_00048370-exon-scaffold_142-1510915933:457121..457300Clytia hemisphaericaexon
TCONS_00048370-exon-scaffold_142-1510915933:456357..456537TCONS_00048370-exon-scaffold_142-1510915933:456357..456537Clytia hemisphaericaexon
TCONS_00048370-exon-scaffold_142-1510915933:455199..455525TCONS_00048370-exon-scaffold_142-1510915933:455199..455525Clytia hemisphaericaexon
TCONS_00048370-exon-scaffold_142-1491911889:462864..462921TCONS_00048370-exon-scaffold_142-1491911889:462864..462921Clytia hemisphaericaexon
TCONS_00048370-exon-scaffold_142-1491911889:460827..461227TCONS_00048370-exon-scaffold_142-1491911889:460827..461227Clytia hemisphaericaexon
TCONS_00048370-exon-scaffold_142-1491911889:460193..460334TCONS_00048370-exon-scaffold_142-1491911889:460193..460334Clytia hemisphaericaexon
TCONS_00048370-exon-scaffold_142-1491911889:459580..459762TCONS_00048370-exon-scaffold_142-1491911889:459580..459762Clytia hemisphaericaexon
TCONS_00048370-exon-scaffold_142-1491911889:459009..459170TCONS_00048370-exon-scaffold_142-1491911889:459009..459170Clytia hemisphaericaexon
TCONS_00048370-exon-scaffold_142-1491911889:458314..458570TCONS_00048370-exon-scaffold_142-1491911889:458314..458570Clytia hemisphaericaexon
TCONS_00048370-exon-scaffold_142-1491911889:457868..458036TCONS_00048370-exon-scaffold_142-1491911889:457868..458036Clytia hemisphaericaexon
TCONS_00048370-exon-scaffold_142-1491911889:457121..457300TCONS_00048370-exon-scaffold_142-1491911889:457121..457300Clytia hemisphaericaexon
TCONS_00048370-exon-scaffold_142-1491911889:456357..456537TCONS_00048370-exon-scaffold_142-1491911889:456357..456537Clytia hemisphaericaexon
TCONS_00048370-exon-scaffold_142-1491911889:455199..455525TCONS_00048370-exon-scaffold_142-1491911889:455199..455525Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_142supercontigscaffold_142:455199..462921 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.20572	0.679861	0.92625	0.410695	0	0.03061	6.28994e-06	0.477554	1.33639	0.00113987	0	1.18968	9.72037	7.8769	6.27442	2.93977	18.7342	6.41418	12.6177	23.7357	26.6121	34.2655	3.6838	1.98297	0.00234952	0	3.98517	1.33877	0.0607943	0.000994153
Blast
[Close]
BLAST of TCONS_00048370 vs. Swiss-Prot (Human)
Match: S28A3 (Solute carrier family 28 member 3 OS=Homo sapiens GN=SLC28A3 PE=1 SV=1)

HSP 1 Score: 460.685 bits (1184), Expect = 7.363e-152
Identity = 268/580 (46.21%), Postives = 375/580 (64.66%), Query Frame = 2 
Query:   41 NDGKAQDELELREKQPPSYQSVQRPSSPADEARRVLRGPLAPVNNFLNMLEDNTRNFIQKESQTVKXXXXXXXXXXXXXXXCFAVTLDAERAKDLIYVTVFG-FFCLFYWLIKKFFGRVIWKSCLKPIVAFFEAKRKIFTWILSLAFVGFLIFWLCWDTRK-DPGRLISLGGLLVYILIGFLFSKQRDRIRWRPVIWGFALQFIFGLLILRTDIGLNVFKWLGDRVTIFLGFSKAGIEFLF--RGLDQF-GLAILPIIVYFSAVTYVLYYLGWMQVFIKKVAWILQVTMGTSPAESVNAAGNIFIGQTEAPLLIRPFLEGMTASELHAVMTGGFATIAGSVLATYILFGVSASHLLSASVMSAPAALAMSKLMYPETEEPEFTEVDKIEIDGTEETNVFEALAVGASMSIGLVANIGVMIIAFLSVLALFDGLLGWFGGMVGLHELSFEFICSYVFMPFAFIMGVDYKDSFEVAKMLGIKTFLNEFIAYEKLGDIIKNRVLERGGLT--------MSIRSEVIATYALCGFANFGSMGVQIGGISSLAPSKRTVLSQVVLRALVAGTLACFMTACVAGIL 1741
            N  + ++++ + +  P + + ++      D+     +G        L    D    F +K   T++ +   I L  Y++    A  L+  RA  L  +TV   FF ++  L+ K+  R+     L P      +      W++  + V  +IFWL +DT K    +L+S GGL++YI++ FLFSK   R+ WRPV+WG  LQF+ GLLILRTD G   F WLG +V  FL ++ AG  F+F  +  D F    +LPI+V+FS V  +LYYLG MQ  I+KV WI+ VT G+SP ESV A+GNIF+GQTE+PLL+RP+L  +T SELHA+MT GF+TIAGSVL  YI FGV +SHLL+ASVMSAPA+LA +KL +PETE+P+ T  + ++++  +  N+ EA   GAS SI LVANI V +IAFL++L+  +  L WFG M    +LSFE ICSY+FMPF+F+MGV+++DSF VA+++G KTF NEF+AYE L   I  R  + GG          +SIRSE+IATYALCGFAN GS+G+ IGG++S+APS++  ++   +RAL+AGT+ACFMTAC+AGIL
Sbjct:   49 NTKQDEEQVTVEQDSPRNREHMED-----DDEEMQQKG-------CLERRYDTVCGFCRKHKTTLRHIIWGILLAGYLVMVISACVLNFHRALPLFVITVAAIFFVVWDHLMAKYEHRI--DEMLSPGRRLLNSHWFWLKWVIWSSLVLAVIFWLAFDTAKLGQQQLVSFGGLIMYIVLLFLFSKYPTRVYWRPVLWGIGLQFLLGLLILRTDPGFIAFDWLGRQVQTFLEYTDAGASFVFGEKYKDHFFAFKVLPIVVFFSTVMSMLYYLGLMQWIIRKVGWIMLVTTGSSPIESVVASGNIFVGQTESPLLVRPYLPYITKSELHAIMTAGFSTIAGSVLGAYISFGVPSSHLLTASVMSAPASLAAAKLFWPETEKPKITLKNAMKMESGDSGNLLEAATQGASSSISLVANIAVNLIAFLALLSFMNSALSWFGNMFDYPQLSFELICSYIFMPFSFMMGVEWQDSFMVARLIGYKTFFNEFVAYEHLSKWIHLR--KEGGPKFVNGVQQYISIRSEIIATYALCGFANIGSLGIVIGGLTSMAPSRKRDIASGAVRALIAGTVACFMTACIAGIL 612
The following BLAST results are available for this feature:
BLAST of TCONS_00048370 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
S28A37.363e-15246.21Solute carrier family 28 member 3 OS=Homo sapiens ... [more]
back to top