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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048386 ID=TCONS_00048386|Name=TCONS_00048386|organism=Clytia hemisphaerica|type=transcript|length=2596bpRun BLAST on NCBI protein sequence of TCONS_00048386-protein >TCONS_00048386-protein ID=TCONS_00048386-protein|Name=TCONS_00048386-protein|organism=Clytia hemisphaerica|type=polypeptide|length=635bp MKKFVTCSEAFDGYLKELALDNFPTGNGQWRNNLRYRSDLLQSSKTKEPSRun BLAST on NCBI transcript from alignment at scaffold_142:606695..619446- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00048386 ID=TCONS_00048386|Name=TCONS_00048386|organism=Clytia hemisphaerica|type=transcript|length=12752bp|location=Sequence derived from alignment at scaffold_142:606695..619446- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_142:606695..619446- >TCONS_00048386 ID=TCONS_00048386|Name=TCONS_00048386|organism=Clytia hemisphaerica|type=CDS|length=28620bp|location=Sequence derived from alignment at scaffold_142:606695..619446- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00048386 vs. Swiss-Prot (Human)
Match: LRC43 (Leucine-rich repeat-containing protein 43 OS=Homo sapiens GN=LRRC43 PE=2 SV=2) HSP 1 Score: 130.954 bits (328), Expect = 2.659e-31 Identity = 119/344 (34.59%), Postives = 179/344 (52.03%), Query Frame = 3
Query: 222 TCSEAFDGYLKELALDNFPTGNGQWRNNLRY--------RSDLLQSSKTKEPSLITTESLHEL--NQKGPFKKDVKWSRDVKKLQSDSVEDPALIDKKNLHLYIKHLRLVDKNISTLDYDFHKFSNLSELILSANYIEEVNAAALPSKLKVLELCGNRLISVEXXXXXXXXXXX-XXXGYN-LIKSVND-FVEPQSWECLLSLDLSFNRVDNLKETSAILSTLPKLRNLLLQGNPVFLFAGYRGYVIDTIKTLSILDDVKITADERHVFKGISTLKDLPLEEFQFNVNIDHLKGFEKQD--DCGNIEEFPRTIIKYHVEIDFISSYEVKDQEHSETTTVVSHVA 1208
T S A +L++L L FP G G W N R+ R + + P T E+L L ++ P+ + + L+ ++ +P I + Y + LR++DK ++ +D D KF L EL+LSAN I+EV+A LP LKVLEL GN + S+E L H P LGLG+N L+ + +V W L+SLDL FN + +L+ L TL LR L+LQGNP+ L YRG ID++ L +LDD+ ++ +E+H+F+G+S DL +E QF V I +++G D E P Y+V DF+ E E +E+ V++ +
Sbjct: 26 TVSAAVREHLRKLCLREFPCGAGSW-NKSRFLPQTWRTWRELVPREEDVVSPGEETVEALLGLVRSRHSPWALLNNSNAEDSFLRELAIRNPLTITDTFFYSYFRSLRVIDKKVTLVDKDLLKFLKLEELVLSANRIKEVDATNLPPTLKVLELYGNEISSMECLCAHPPAGLQHLGLGHNKLLGPLESLYVTANHWPNLVSLDLGFNDLTDLQSMVTSLRTLRHLRLLVLQGNPLALVPYYRGLTIDSLAQLCVLDDITVSPNEKHLFRGLSLNGDLLAQEAQFVVTIGNIRGVLDTSVLDPEPRPEGPFITYNYYVTYDFVKDEE---GEMNESAGVLAEIV 365 The following BLAST results are available for this feature:
BLAST of TCONS_00048386 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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