TCONS_00048396 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048396
Unique NameTCONS_00048396
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1307

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048396 ID=TCONS_00048396|Name=TCONS_00048396|organism=Clytia hemisphaerica|type=transcript|length=1307bp
cagatataaaataaaatttcacgAAGACGATAAAAATACATATTCGAATT
TGAAGGAAGACTTAACTTGAAGCttgacaaaattttaaagaagataCATA
CAACTGAATCTTGAACTACTTAGACAATGGCATATTTACTCAGTATCACG
ATCttatcatcaattttgattggttttacAAATTCTGCCAGTTGGAGATC
CAAAGAACATCAATATAATTACAGAATGTCGGTCATTGAGAATGGGGTAA
CCAACAAATGGATGAAAGGATTTCAACCATGTAAAGACGAAGTGAAGGCT
tgcaaaaaatggaaaaacaatgGACAACTCAACTGCAATttgaaaatcat
aaagaaaTTCTGTAAAGACAGTTGCGATGTTTGTCGCGCTGAGGGGCCAC
CACTCGATTGCAAAGTTTCCAAACACGGGTGTTGTTGGGACAACTCTACT
GCCGCTACGGGAAAATTCCAACAAGGGTGTCCGGCTTGCAAAGATCGATA
TCCGGACGAATGTAAAGCATTTATAAAACAATGCGGGCGTGAAGATATAC
GGATCATGTGTCCACAAACATGCGGAGTACCTTGTAAAACTTGTGAAGAT
GACCGCCATCAACATACAATATGCCCATTGTACAAAGAACATGGCTTTTG
TACCCATTCCCCCATCCTCATGAAGAAAGTCTGTTCAAGAACATGCGGTT
TTTGTCCAAGCTAATTTTCATCTAGGAGTTTGTATggacatttttatcaa
aaatgaggatAACACTAATGATGAAATCCATGGAAATTTTACAAATGGTT
GTGGAGATGCAGATTCGACTCAAACTATTGGAATCGATAATAGAGAAAAG
TTCTTTCTTTGGATGACAAAGAAATTCGACGCCTCAGCAAAATATGACaa
gaaaattagtttaaaaagaaaataatcgAACTAACAAATTACAATGCTGG
GAAATACTGGCTAGTAACTCAAACCTGATATGTGATCATAAAGGATTTCA
GTGTTGTGCTGATTTATGGTAGTTTAAATGCTTAGTAGcagtattttgat
ttaaaagtaaGCGTTAATATTTTACACAAACAACATAATATTTTTATTgt
agaaaacaaaaacatttagcGCTTAAATCTATAAACTTTTACCCAGAAAA
ACAAACGTGTATATATGTAGTTTTTGTTTGTAAATATAACTTGAACCAAT
GTTAaatataagaatcactattcaTAAGAATTCCTAATGAGATATTAGCA
TGGGAGTTTGGAATTACTAGATACTTTAATCgtataaattttagcgagac
taatttt
Run BLAST on NCBI

protein sequence of TCONS_00048396-protein

>TCONS_00048396-protein ID=TCONS_00048396-protein|Name=TCONS_00048396-protein|organism=Clytia hemisphaerica|type=polypeptide|length=195bp
MAYLLSITILSSILIGFTNSASWRSKEHQYNYRMSVIENGVTNKWMKGFQ
PCKDEVKACKKWKNNGQLNCNLKIIKKFCKDSCDVCRAEGPPLDCKVSKH
GCCWDNSTAATGKFQQGCPACKDRYPDECKAFIKQCGREDIRIMCPQTCG
VPCKTCEDDRHQHTICPLYKEHGFCTHSPILMKKVCSRTCGFCPS
Run BLAST on NCBI

transcript from alignment at scaffold_142:822738..832518-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048396 ID=TCONS_00048396|Name=TCONS_00048396|organism=Clytia hemisphaerica|type=transcript|length=9781bp|location=Sequence derived from alignment at scaffold_142:822738..832518- (Clytia hemisphaerica)
CAGATATAAAATAAAATTTCACGAAGACGATAAAAATACATATTCGAATT
TGAAGGAAGACTTAACTTGAAGCTTGACAAAATTTTAAAGAAGATACATA
CAACTGAATCTTGAACTACTTAGACAATGGCATATTTACTCAGTATCACG
ATCTTATCATCAATTTTGATTGGTTTTACAAATTCTGCCAGTTGGAGATC
CAAAGAACATCAATATAATTACAGAAGTAAGTCAATTTTTCATCTCGTTG
AACTTTCAGAGCATTCTGGGTTAAAACCGCGGAGATGTCTAAATATTCAT
ATACCCCTGTTTCATTGTTTTAGGATCTCCAATAACTCTAACCGTACTGT
AATCGATTTCTCGTATTTTTTGTCGATGGAATCGACGATTACTCAATCGA
GAATTTAGAATGATACAGGGGTTTTGTCATCAGGTTATAATTTCTTTAGT
GGTGAGAGTTCGGACTTTTCGATGATGAAACATGACACCTTGGGTGTTCA
CATAGCGTGATTGCGTGATCTAAGTTGAATGCACAGAGGAATTTCTGCCT
GAGATTATGAAAACGCAAAATTGAATTTAATCGAATTAAAATTCCAATTC
TTTTCGTAAAATTTAATGATATCGGGTGCTAGGAGAGGAATGTTACATCG
ATCAGTGGGTGAAAGAAAAAAGAATTAACAGTATCTTATGCAAAGGAAAT
TACTTTTTTATGATAAGGAAAAAACTTTATCAAGGACACACTGCGCTTCT
AATTGAATTCCAGTGAGCTAATTTATCTATCAATTTTTCTTTCAAAATGA
CAGAAAATTACACAAAACTGTCAGGATATCATCAACTGTATTTTGCTGGT
CAATTTCCCAGCGTGATCATAGTTTATATCTCAATCACGTGATCAGTTGT
TAAAAGGGTGGTGGTTAAACCTTACCTTACAATGAAGGACTTTTGGTTTC
GAGGGCTTTTAGGTCAATTTACAATAGAAGTCTTTACAAATACCATAATT
CAATTCATGCTAATACCCAAAGTTTATAATCTTTGGAGTTTAAATCGGAG
TTAGAACCTTGTGATTGGGTTGCAATGTCTCGATATAGATTACATGCCTC
AAAATACAATCCTATCTTGGGGCTTTATCTTTAGATGTGGTTAGGGCGAT
AAATGTCAGGGAAAATTAGATTACGAAACTAAAAAATTTGATAGATCCAA
AGTCATTTTAATTGAGAGTTTAACTTAATTAAAAGCTTAATGAAATCAAC
CTAATAAGATAAGTCTAGTTGATCCAATATTGGTCAAAAACATTTTAATT
TACTTCGGTCAACCTTAAGGAGGTCATCGACCCATATAATATCAGTCTGT
CTTTTTTCTGGTCAAATTTTCATTTTTTGGTTAAAACTCAAATATAACCT
ATTCACAACAACTTCCCAAAGTTTCAGGTCATAAAAAGAAGAAGAAGGTT
AAAAATTTTAGTTATAAAGATGCTTACCTAGACAGAAATTGGTCTCCGCC
CGTTTGCGCCCGTATTTCCGCCCAGAGATAAAACAGCTATAATTCTGCTT
CTAGCGCTTCAAGCTGCTTGAAATTTTTTACGGGACGTCTTAAAGTCGCA
AATATTCTTTATGTTAAGTTCAAAAGTAGCTTACGCGTACCGCGATCGAG
TTATAAACATTGTAAATATTCACCGCCCTTGAAATCATTTGAGAGGTGGG
TTGACTGAGAGTAACCTCTGTGCTTTATNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNCTTATTGGAACAGTGATTTCTAACTTTACCGCATGTT
TTCTCAAAATGTCGAATTTGGTGAAAATTGGCGGTTGCGACATTTTTTCT
CAAGATAGGTTGGGAGTTAAAAGTTGAAACTTGGCAGGATTGCTCCTTGG
ATGAAAGTCTATGAAATGGATGAAAAATTTTTTTCCCTTAGTAACCGTTG
CCATGGTAACTAGGGAAAACATAATTTTCTAGTTTCCATAGCAACCGTTG
CTATGCAGAAAAAGTTTTTTCATTCATTTCATAGAGTTTCATCCAAGTAA
CAATCCTGCCAAGTTTCAACTTCTAATTCTAAAGCTAACTTGAGAAAAAA
TGTCGCAAAGTTTCTATTTTTCCGGGTTGCCGGGGCCGCAGCCCCTAGCA
ACGGGGTGCCATTTTGAAAAAAATTGTCGGAATTTGTTATTTACAGTATA
TACTATCAATTTGGACCAACAAAACTTTAAATAACTTTGCAGAACAGTGT
TTTTCAAAAAAGGGTCTCTAAGGGTCGATGACCTCCTTAAAACGTTTGTT
TGTAGTAATAATACCACGTTTTATCACAAAACCACTCCCCGAACCACATT
ACATTTCTCGTCTTCCCACGTCGTTCTAAAGAACTGCTTCTTTGCAATAA
TATACAAAGCTTGGGCTAAATAAAAAAATAAAAATCGATATCAACACTCT
GAATGGAACTTTTAACAACTTTTGATAATTTTCTACATTGCGTTTTTGCC
CGCCTTAATTAAGTCTTATGAGTTGTGATGTAATATCAGACAAGCAGACT
TGCATAGCAAATGCCGAGCAAATGTCAAATTATATTTCAAATTCCTAAGA
GTAACCTATGATTGCAGAGTCTCGAATATGCCAAATAAGATAATTAATGA
AGCAAAAAGGTGTGGCTTATAGCAAGGTAGTCATTTTTGAAAATTACAAG
GTATCATTAAAAAAGTGATGTGGAACGACTTGTAAGAGACTCCAAGAAAA
TTATCTTTAGAAAGATGCTTTGTCTTGAAGAGCTGTCAAAAGGAAACGTA
GAATTACATCATCGAAAATTATTTCCCCTCCAACACACTGAGCGATCTTT
ACAATAAGTTAATTTAAAACACATCACTGCTCAATATCCGAACCTACCTA
CAACCTCCGTGTAGTTACTCAGCATTTAATGGCAAACGCGCTTCCTTAAG
CTCCATGAGAGTAGGAAATGCATAAAGAGAAAATATTTCCACAGCATGAC
AGCGAAACTTTGAAATAAGATTAACTCTTTTATTTTTGCTGAGTTTTGGA
TATTTTGCTTGTTAGCTGAGAAAAGTTTAGGACACGTAGTAACGACCATA
TGACCTTGTTGGGCTATTTTTAAACAGGAAAAGAATGCTGGGTAATCTGG
GAGATCTTGACGTTAAATTTGCGAAGATGAAGGTCACATGTATCAGCAGT
GACGTCATTCAAAACCCTAACTGTTTATGATTGTAACAGCAAGACCCAGA
AAGTTCGGATACAGTGCTATGACCTCAAAAAACTGCTCAAAAAGTAAGAA
AAAAAGATAGACAAAACAGTGCTCTGTCGTGTTTGTCAGTTTGTGGTACT
ACTTTTCCTGAGAAAATTGACTGAAAGCTGTGAATTATCGCAACCGTACC
TTAAAAGGATAGAAATAAAAAAATCAACTTTTTGCATTGTGATGACGTCA
ATAAAGACTTAGAAACATGACATTAAAGGATTTATACTGAAAATCATCTC
TGATGAAAGACCGATTTCAATCTTGCAATCAAAATACTTTTTTCGACTGA
AATTTTCGGCGAGTTGACGTTAATGAATAGCTGGAGAATTAGGCCTCATT
ACAAACGATTAATTTTTTAACATCATTAAAGGAAAGCGGCGAAACATATA
ACAATAGTGTATGCGTGATCAGTGTTGGCAATCAAGTTGCTCCCGAATTC
CTTAAAGCCCCTCCTCGCACAGGAAAACCATAAAGGCTAACCTTTTACTT
TTACAATGAACCCTTACATATCCAAGGCAGGCTCCCTATGTGATTTTGAG
AACCTTGTGGTATATGCTTCCATAGAATGCTAATACAATTTTTACTTTTA
AAATTGAATTTCAATATTAATCCAAGCCTAGATATATCAATGAAGGAACA
TGAAAAATCTCTGTGTAAGTAAAGTAATTTACATGAGTAAGATGACGCAG
TCGAAAGATAGGTGTCGATGTAACGACTTGCCGATAATGAAGTGGCAAGT
TAATCTTTTCAAAAAAATGATCTACTGAATAGAGAAAGAAAATGAAAAAT
ATGTGAAGTTACGTGGTGTTACTACTCTTCTTGGAGTTCTAACCTGTTCA
AGAGTTCATCTATGTACCTAGAAAAGCTTTTAAGGATACCAAAGTTCTCT
CAAACTTTCTTCAAGTGTCCAAACTTAAACTTAAACTTCAGAATTTCCCA
GGAATAAGGTGATTCAGGATGACTGCAGAAAATTCCCAGGCAATGAATGA
CTCATTGCTTAACCTGTGAGAAGTTAAAGTAATCAATTTCTAATCAGGAC
CTCTTCACATGAAATAATCACATTAATATAAATTCTTATCAATTGTATTT
TAAAACCATCCAATCAAAAAGCACTTAGAACAATATTTTTTATACCACAC
AAAGTCGTTTTTGGTTTTTGATGCTAGGAGTGGCGGCTAGTTCCTCTTTT
GGCAATAATTCAAAGTCACGAAAACTCAATATTAGTTCTGCGTCTTAGTT
ATGCTTTCCTCGAGACTAAAATGTTTCCTCAAGATATTCGAGACTAAGAT
GTCTCCAGAAATTAATTAGAGGTCAAGTAGGATAATTGCTGTTGTCTCTT
CCGATAATGCAACACGATGCACATGGTCAGGTCAAAGAGAAACATATTAC
ATTACTTAATATTCGCTTAAGGTAGTCTGAATCGTAGACCTCTATGGATA
TACTTCCTGTAAAAGAAACTCTTTTCGCTAGAGGATAAGCAGGCCTACGA
TCGAGGTTAACAGCGTCAGCTGGATAAAAAAGCCTATATGCTGATGAAGT
CACGACAAAAGATGACGAAATTTCTACTTAAGCAGTAGGCCTAAATAGAG
TTATTTAAAACACCATCCCCTCTAGTTTAGAAGAGCGGAACTCCTTGGTA
TAATTGGACATTCTAGCTAACTATGACGTCACCTTAAAGAAAATCGATGA
TCACTTAAATCTAGAAGGAGACTCGGAAACGCTCAATTAAGGTCATTAAT
TCAGACCTCACTTAATCTTCCGCCTTTCGGTATCAGCGAGCGGAAAGCGG
AACGTCACCGGATTCCTATTGAAGGAATTTATGAGGGATTGATGAGATGA
ACCTTCAGGCGATATATGACGTCATAGACTTCGAGGCTTAAATTCCTTAT
ATTGTTAAGTCAACAAACATAGGCTGGATGATTCTTTTGGTTGATTCAGA
TCACCAGAGGTGTTTTCATTCATAATAATGTTACAAATTATTTGAATTTT
TGGAAAATTACTCACTGGGAGCTTTTTAATGACTTAACGACTAGTTAGCT
CGAAATTTCTTGGCAAGTTTAAGTTAGAAAAGGCGCTTAGCCGTCTATAT
CGAGATGATCCGCCAACCTCAAAATGCTTTATTCAGATTTATTTGCCTAG
AAAGGGAACTTTTGATTCAGTCTCAGCAGCAAGTATCGCGTACATAAATT
CTCATTAGACCTTATGAGAGTCTAAGTGTCAAGCATCACAAAATCTCAAT
CTAAGCTTCGAGATGATCTTCCTATACCCGTCCCTTCTATCAAAACTAGT
GATTAAATCCATAATAAAGATACTTGAAAACTTAATCTAGCCATGGGAAC
TTTATTGAATTTTCAATTATTAAGCATTTTGTTTACAAGATCCATCAGTA
TTAGTAAAGCTTAAATAAAAGAGACTTAGACTTAAGTCTCACTAATATTC
AATCATATTATCAAGACCCTTTTATATCGAGTGCTTAAAATGAGTCTAAT
AGGCAATAGAGGCAATGAACAAAATAATCTTATAAGAACTTCAAACAAGA
TATAAAATATCTGAACCGGAAATTAGGCGTCATAAACAGCAAGATTGAAA
CATCGGGTCACAAAAAATATATTACGCGTTAATCGATTTGGCAGTTTTTT
ATATATTCGATACCATGTTTTACAGACAGAATTAACGTTTCTGTCTATCG
TTAGTACATAAGATTCTTATGAAGGAGTGCCAAGGAAAAGTTAATGAAAA
TCGGCTTAAACCCATTAAAATGAGCTGAAATGGAAAAAAGAATCCATGAG
AAATTCCTAAATTAAGGTTTGGTATACACGTTCAAGGGATTATCAAGCTA
TAAATAATCACTTAAATTGTTGTGTTTTCCTACTTATAAAAATGCAGCTT
AAACCTTTAAATATAAAAGGCCCTAACAACAAATACCCTGTTGTGGAGAT
TGGTCATGTTTTCTGATGTCATACGAGTTGTTGTTGTTTCGAAAATTCTA
CTCGAATCAATGCCACAGTGGACAAAAGTCACTAAAAAATGTCCGGTGTA
CAGGAAGAGTAATGAAATCCAAATTGAGCTTTTACCTAATTGTAGTTAAC
GATCATGCAATCACGCTAAACACCCAGACAGTTTTTCATGACCCCTCCCC
CATAGTAGACCTTAAATTCACAAAATCATGTTTTTTTTATCTCATAAAGA
GGAACCAACAATCCTTTTGATTTTTATTTTTTGCAATATATTTCGATCAT
TTTTAAGATCATCATCAGGCTAAAAATTAGAATAAAAAAACAAGATTAAA
ATCTAGAGTAAAAACATCATATACATCTCATACTACAACTACACATAACC
TACTGTAAAGAGAAAAAAAAAATTAATTGAAAAAATTCGATTGAAAACAA
AAACCTACAAAACCTAATTAAATGAGAGCTAATTCTCAAGTGACAAAAAA
AAATCAAAATAGTTTTATGACCAATTCATGGCTTTTGTATTCGTCTCTCG
TGTTAATAGAAGGCTTTAATTGTGCAATAAAAAGAGCCTCAAGAGTCAAT
AAGTGAGCNGACATGTTTTTTTTTCTCGAAATTCACGCAAATTTATTTTT
CGAGATTTACGCAATTTTTGTTCACGCAAAGTTTTCACGCATTCAAAGCA
AACCGGGGGTGGCATATTCCCATGATGATTATAGTAAGCCTGTCCAAGTT
TCAAGTTTTCAATGTCTCCACTTTTTTCTTGCAGTGTCGGTCATTGAGAA
TGGGGTAACCAACAAATGGATGAAAGGATTTCGTAAGTATTTCTCATAGT
TCAATCAGCCATGGGTTCAATGTAAATCTAAAAGGATATCGAGTTGTGTT
AATGACTAACGTCTTAAATTTCTAATTTCAAAGTAGAGCATTTCTAATTC
GCCACTCGTGTTAACCATAATAGAATATCAGATTTAAGGGCATCATGAAG
TTGATTTGACCATGAGATTTAGGATTAATAATTGAACCTCTGTTATTTAC
AGAACCATGTAAAGACGAAGTGAAGGCTTGCAAAAAATGGAAAAACAATG
GACAACTCAACTGCAATTTGAAAATCATAAAGAAATTCTGTAAAGACAGT
TGCGATGTTTGTCGTAAGTAGATTCTNTATAAAGAAGTTCTGTAAAGACA
GCTGTGGTGTTTGTCGTAAGTAGATTTTCTACCGTTTTTTGAGAACATAA
ACACATGCTCTCAATTGATGAGGTTGATCGTGACAGAAACATTGGAGGGA
CTATTTTCATAATCAGGTTGCACTGTATGAAGTCTGTTTGTAGTCACTTA
TTACTGAAAAAGCACTTCAGAAACTGATATTCTCCTTTCGTACTTCTAGG
CGCTGAGGGGCCACCACTCGATTGCAAAGTTTCCAAACACGGGTGTTGTT
GGGACAACTCTACTGCCGCTACGGGAAAATTCCAACAAGGGTGTCCGGCT
TGCAAAGATCGATATCCGGACGAATGTAAAGCATTTATAAAACAATGCGG
GCGTGAAGATATACGGATCATGTGTCCACAAACATGCGGAGTACCTTGTA
GTGAGTAATCCTTCATCTTCTTCTAGTCAAAGTTTTGAATAGATTCTACT
GTGGACAGAACAAGTAGAAAATCAGGCCTTAAGCTCAGAAAGCATTTGTC
TTAAAATATTTTCCTTTTTTGAGGCTCTTATGAATTAGCTGAATAACAAT
ATCAGAGAAGCATCAGTGAAGTACACGAATTTTTTATAAGAACAAACTAT
ATAAGAACATAAGGCCTCGATGCCCAAAATGTTAAGAACAAGTTGAGAAC
ATTTTAAGGCTTTTTGGACTCAAAAACACCCGTTTTTTCAGGACAATGGG
TAAAAATATAGTCGCAAAATGGTGAAATTAAGAACATTTTTAGGCTTGAA
ACCCAAAAAGTAAAGAAAATCTCAAATCGCTTCAAAAATTTTGGATTTTC
TTATATAAAAAACACGTGTACATGCTACTCCTTCACCAACGGGTCAACTC
CCCCAAAAGACACCAGACAAGCAAAACTAACGGCTATCCTTCTTTACTTT
CTCTTTACAGAAACTTGTGAAGATGACCGCCATCAACATACAATATGCCC
ATTGTACAAAGAACATGGCTTTTGTACCCATTCCCCCATCCTCATGAAGA
AAGTCTGTTCAAGAACATGCGGTTTTTGTCCAAGCTAATTTTCATCTAGG
AGTTTGTATGGACATTTTTATCAAAAATGAGGATAACACTAATGATGAAA
TCCATGGAAATTTTACAAATGGTTGTGGAGATGCAGATTCGACTCAAACT
ATTGGAATCGATAATAGAGAAAAGTTCTTTCTTTGGATGACAAAGAAATT
CGACGCCTCAGCAAAATATGACAAGAAAATTAGTTTAAAAAGAAAATAAT
CGAACTAACAAATTACAATGCTGGGAAATACTGGCTAGTAACTCAAACCT
GATATGTGATCATAAAGGATTTCAGTGTTGTGCTGATTTATGGTAGTTTA
AATGCTTAGTAGCAGTATTTTGATTTAAAAGTAAGCGTTAATATTTTACA
CAAACAACATAATATTTTTATTGTAGAAAACAAAAACATTTAGCGCTTAA
ATCTATAAACTTTTACCCAGAAAAACAAACGTGTATATATGTAGTTTTTG
TTTGTAAATATAACTTGAACCAATGTTAAATATAAGAATCACTATTCATA
AGAATTCCTAATGAGATATTAGCATGGGAGTTTGGAATTACTAGATACTT
TAATCGTATAAATTTTAGCGAGACTAATTTT

Coding sequence (CDS) from alignment at scaffold_142:822738..832518-

>TCONS_00048396 ID=TCONS_00048396|Name=TCONS_00048396|organism=Clytia hemisphaerica|type=CDS|length=2940bp|location=Sequence derived from alignment at scaffold_142:822738..832518- (Clytia hemisphaerica)
AAACTTGTGAAGATGACCGCCATCAACATACAATATGCCCATTGTACAAA
GAACATGGCTTTTGTACCCATTCCCCCATCCTCATGAAGAAAGTCTGTTC
AAGAACATGCGGTTTTTGTCCAAGCTAAGCGCTGAGGGGCCACCACTCGA
TTGCAAAGTTTCCAAACACGGGTGTTGTTGGGACAACTCTACTGCCGCTA
CGGGAAAATTCCAACAAGGGTGTCCGGCTTGCAAAGATCGATATCCGGAC
GAATGTAAAGCATTTATAAAACAATGCGGGCGTGAAGATATACGGATCAT
GTGTCCACAAACATGCGGAGTACCTTGTAAACCATGTAAAGACGAAGTGA
AGGCTTGCAAAAAATGGAAAAACAATGGACAACTCAACTGCAATTTGAAA
ATCATAAAGAAATTCTGTAAAGACAGTTGCGATGTTTGTCTGTCGGTCAT
TGAGAATGGGGTAACCAACAAATGGATGAAAGGATTTCATGGCATATTTA
CTCAGTATCACGATCTTATCATCAATTTTGATTGGTTTTACAAATTCTGC
CAGTTGGAGATCCAAAGAACATCAATATAATTACAGAAAAACTTGTGAAG
ATGACCGCCATCAACATACAATATGCCCATTGTACAAAGAACATGGCTTT
TGTACCCATTCCCCCATCCTCATGAAGAAAGTCTGTTCAAGAACATGCGG
TTTTTGTCCAAGCTAAGCGCTGAGGGGCCACCACTCGATTGCAAAGTTTC
CAAACACGGGTGTTGTTGGGACAACTCTACTGCCGCTACGGGAAAATTCC
AACAAGGGTGTCCGGCTTGCAAAGATCGATATCCGGACGAATGTAAAGCA
TTTATAAAACAATGCGGGCGTGAAGATATACGGATCATGTGTCCACAAAC
ATGCGGAGTACCTTGTAAACCATGTAAAGACGAAGTGAAGGCTTGCAAAA
AATGGAAAAACAATGGACAACTCAACTGCAATTTGAAAATCATAAAGAAA
TTCTGTAAAGACAGTTGCGATGTTTGTCTGTCGGTCATTGAGAATGGGGT
AACCAACAAATGGATGAAAGGATTTCATGGCATATTTACTCAGTATCACG
ATCTTATCATCAATTTTGATTGGTTTTACAAATTCTGCCAGTTGGAGATC
CAAAGAACATCAATATAATTACAGAAAAACTTGTGAAGATGACCGCCATC
AACATACAATATGCCCATTGTACAAAGAACATGGCTTTTGTACCCATTCC
CCCATCCTCATGAAGAAAGTCTGTTCAAGAACATGCGGTTTTTGTCCAAG
CTAAGCGCTGAGGGGCCACCACTCGATTGCAAAGTTTCCAAACACGGGTG
TTGTTGGGACAACTCTACTGCCGCTACGGGAAAATTCCAACAAGGGTGTC
CGGCTTGCAAAGATCGATATCCGGACGAATGTAAAGCATTTATAAAACAA
TGCGGGCGTGAAGATATACGGATCATGTGTCCACAAACATGCGGAGTACC
TTGTAAACCATGTAAAGACGAAGTGAAGGCTTGCAAAAAATGGAAAAACA
ATGGACAACTCAACTGCAATTTGAAAATCATAAAGAAATTCTGTAAAGAC
AGTTGCGATGTTTGTCTGTCGGTCATTGAGAATGGGGTAACCAACAAATG
GATGAAAGGATTTCATGGCATATTTACTCAGTATCACGATCTTATCATCA
ATTTTGATTGGTTTTACAAATTCTGCCAGTTGGAGATCCAAAGAACATCA
ATATAATTACAGAAAAACTTGTGAAGATGACCGCCATCAACATACAATAT
GCCCATTGTACAAAGAACATGGCTTTTGTACCCATTCCCCCATCCTCATG
AAGAAAGTCTGTTCAAGAACATGCGGTTTTTGTCCAAGCTAAGCGCTGAG
GGGCCACCACTCGATTGCAAAGTTTCCAAACACGGGTGTTGTTGGGACAA
CTCTACTGCCGCTACGGGAAAATTCCAACAAGGGTGTCCGGCTTGCAAAG
ATCGATATCCGGACGAATGTAAAGCATTTATAAAACAATGCGGGCGTGAA
GATATACGGATCATGTGTCCACAAACATGCGGAGTACCTTGTAAACCATG
TAAAGACGAAGTGAAGGCTTGCAAAAAATGGAAAAACAATGGACAACTCA
ACTGCAATTTGAAAATCATAAAGAAATTCTGTAAAGACAGTTGCGATGTT
TGTCTGTCGGTCATTGAGAATGGGGTAACCAACAAATGGATGAAAGGATT
TCATGGCATATTTACTCAGTATCACGATCTTATCATCAATTTTGATTGGT
TTTACAAATTCTGCCAGTTGGAGATCCAAAGAACATCAATATAATTACAG
AAAAACTTGTGAAGATGACCGCCATCAACATACAATATGCCCATTGTACA
AAGAACATGGCTTTTGTACCCATTCCCCCATCCTCATGAAGAAAGTCTGT
TCAAGAACATGCGGTTTTTGTCCAAGCTAAGCGCTGAGGGGCCACCACTC
GATTGCAAAGTTTCCAAACACGGGTGTTGTTGGGACAACTCTACTGCCGC
TACGGGAAAATTCCAACAAGGGTGTCCGGCTTGCAAAGATCGATATCCGG
ACGAATGTAAAGCATTTATAAAACAATGCGGGCGTGAAGATATACGGATC
ATGTGTCCACAAACATGCGGAGTACCTTGTAAACCATGTAAAGACGAAGT
GAAGGCTTGCAAAAAATGGAAAAACAATGGACAACTCAACTGCAATTTGA
AAATCATAAAGAAATTCTGTAAAGACAGTTGCGATGTTTGTCTGTCGGTC
ATTGAGAATGGGGTAACCAACAAATGGATGAAAGGATTTCATGGCATATT
TACTCAGTATCACGATCTTATCATCAATTTTGATTGGTTTTACAAATTCT
GCCAGTTGGAGATCCAAAGAACATCAATATAATTACAGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030790XLOC_030790Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048396-exon-scaffold_142-1575043694:832293..832518TCONS_00048396-exon-scaffold_142-1575043694:832293..832518Clytia hemisphaericaexon
TCONS_00048396-exon-scaffold_142-1575043694:824737..824784TCONS_00048396-exon-scaffold_142-1575043694:824737..824784Clytia hemisphaericaexon
TCONS_00048396-exon-scaffold_142-1575043694:824406..824516TCONS_00048396-exon-scaffold_142-1575043694:824406..824516Clytia hemisphaericaexon
TCONS_00048396-exon-scaffold_142-1575043694:823969..824169TCONS_00048396-exon-scaffold_142-1575043694:823969..824169Clytia hemisphaericaexon
TCONS_00048396-exon-scaffold_142-1575043694:822738..823458TCONS_00048396-exon-scaffold_142-1575043694:822738..823458Clytia hemisphaericaexon
TCONS_00048396-exon-scaffold_142-1510915933:832293..832518TCONS_00048396-exon-scaffold_142-1510915933:832293..832518Clytia hemisphaericaexon
TCONS_00048396-exon-scaffold_142-1510915933:824737..824784TCONS_00048396-exon-scaffold_142-1510915933:824737..824784Clytia hemisphaericaexon
TCONS_00048396-exon-scaffold_142-1510915933:824406..824516TCONS_00048396-exon-scaffold_142-1510915933:824406..824516Clytia hemisphaericaexon
TCONS_00048396-exon-scaffold_142-1510915933:823969..824169TCONS_00048396-exon-scaffold_142-1510915933:823969..824169Clytia hemisphaericaexon
TCONS_00048396-exon-scaffold_142-1510915933:822738..823458TCONS_00048396-exon-scaffold_142-1510915933:822738..823458Clytia hemisphaericaexon
TCONS_00048396-exon-scaffold_142-1491911889:832293..832518TCONS_00048396-exon-scaffold_142-1491911889:832293..832518Clytia hemisphaericaexon
TCONS_00048396-exon-scaffold_142-1491911889:824737..824784TCONS_00048396-exon-scaffold_142-1491911889:824737..824784Clytia hemisphaericaexon
TCONS_00048396-exon-scaffold_142-1491911889:824406..824516TCONS_00048396-exon-scaffold_142-1491911889:824406..824516Clytia hemisphaericaexon
TCONS_00048396-exon-scaffold_142-1491911889:823969..824169TCONS_00048396-exon-scaffold_142-1491911889:823969..824169Clytia hemisphaericaexon
TCONS_00048396-exon-scaffold_142-1491911889:822738..823458TCONS_00048396-exon-scaffold_142-1491911889:822738..823458Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048396-proteinTCONS_00048396-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_142supercontigscaffold_142:822738..832518 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.78536	6.58529	6.32911	3.47184	7.58179	6.71431	13.127	10.4615	12.4705	9.78064	9.46059	12.1153	24.9919	30.0383	10.7149	8.52558	15.4025	18.3975	53.5822	53.4821	32.8648	34.6511	21.9691	22.5804	28.0651	36.3173	39.343	42.6025	20.4777	21.229
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003582ShKT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048396 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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