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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048398 ID=TCONS_00048398|Name=TCONS_00048398|organism=Clytia hemisphaerica|type=transcript|length=802bp
NNTAGAAAATAATGTGAACTCTATTTTCTAGAGCCACcaattgaaaatta
ttgaagatATAACGATCAGAAATGTTTTAACTTCTTCATCGTTAATACTG
TTGAATATTTCCAATCACCAATCGTGTCTTGTAGAACAAGTGAAGTTTCA
GGTGAAAGCGAGCAGAATTGCAAAATAAGCTTCACCATGGACGGAAGGTC
AACGAGCATTCAAATGCTGGTAACATATCTTGTCATCCTAGCTGTTTGTT
TAGAGAGGGTCCAAAGCACTTGTGGTGGTTATACCCAAGAACAATGCGCA
GATTCTTCCACTATGCATCAGTTCAAGAGATGTGTTCACAAAGTTTTCCA
TGCGTGTCTAAAAAGACATCCGTTGAAACGTGACCCTCACGAAGAGAACG
TGGGGCGTGATCTTCACGGACTGAACATGGAGCGCGACCCTCACGGAATG
AGTGTGAAACGTGACCCTCAAGGAATGAACGTGGAACGTGACCCTCAAGG
AATGAACATGGAACGTGACCCTAACAGAACACCTGTTCTTTGCAATACAA
TTGTTTACGTGTGGAAGAAGGAACGTTTTTGTCATGTGAAATGCTTTTGG
ATAAAATACAAAGTGCCGCACTACATCCGTTGTGCGAAGTAGtaaactat
ttttatttttattttgtatttatttaaTTCAAGCaatctttatttcaaat
tctAAACTTTTTAAGCATGTCACACGTATAAATGCGATACCGTGAGatgg
ggtaacttgcatcagtggaggctaacatgcatagcccttaaatgaatgac
ct Run BLAST on NCBI protein sequence of TCONS_00048398-protein >TCONS_00048398-protein ID=TCONS_00048398-protein|Name=TCONS_00048398-protein|organism=Clytia hemisphaerica|type=polypeptide|length=151bp
MDGRSTSIQMLVTYLVILAVCLERVQSTCGGYTQEQCADSSTMHQFKRCV
HKVFHACLKRHPLKRDPHEENVGRDLHGLNMERDPHGMSVKRDPQGMNVE
RDPQGMNMERDPNRTPVLCNTIVYVWKKERFCHVKCFWIKYKVPHYIRCA
K Run BLAST on NCBI transcript from alignment at scaffold_142:846441..847350- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048398 ID=TCONS_00048398|Name=TCONS_00048398|organism=Clytia hemisphaerica|type=transcript|length=910bp|location=Sequence derived from alignment at scaffold_142:846441..847350- (Clytia hemisphaerica)
NNTAGAAAATAATGTGAACTCTATTTTCTAGAGCCACCAATTGAAAATTA
TTGAAGATATAACGATCAGAAATGTTTTAACTTCTTCATCGTTAATACTG
TTGAATATTTCCAATCACCAATCGTGTCTTGTAGAACAAGTGAAGTTTCA
GGTGAAAGCGAGCAGAATTGCAAAATAAGCTTCACCATGGACGGAAGGTC
AACGAGCATTCAAATGCTGGTAACATATCTTGTCATCCTAGCTGTTTGTT
TAGAGAGGGTCCAAAGCACTTGTGGTGGTTATACCCAAGAACAATGCGCA
GATTCTTCCACTATGCATCAGTTCAAGAGATGTGTTCACAAAGTTTTCCA
TGCGTGTCTAAAAAGACATCCGTTGAAACGTGACCCTCACGAAGAGAACG
TGGGGCGTGATCTTCACGGACTGAACATGGAGCGCGACCCTCACGGAATG
AGTGTGAAACGTGACCCTCAAGGAATGAACGTGGAACGTGACCCTCAAGG
AATGAACATGGAACGTGACCCTCATGGAATTAACGCAGAGCGTGACCCTC
ACGGAATGAGTGTGAAACGTGACCCTCATGGAATGAACGCAGAACGTGAA
CCTCACGGAATGAACATGGAACGTGACCCTAACAGAACACCTGTTCTTTG
CAATACAATTGTTTACGTGTGGAAGAAGGAACGTTTTTGTCATGTGAAAT
GCTTTTGGATAAAATACAAAGTGCCGCACTACATCCGTTGTGCGAAGTAG
TAAACTATTTTTATTTTTATTTTGTATTTATTTAATTCAAGCAATCTTTA
TTTCAAATTCTAAACTTTTTAAGCATGTCACACGTATAAATGCGATACCG
TGAGATGGGGTAACTTGCATCAGTGGAGGCTAACATGCATAGCCCTTAAA
TGAATGACCT Coding sequence (CDS) from alignment at scaffold_142:846441..847350- >TCONS_00048398 ID=TCONS_00048398|Name=TCONS_00048398|organism=Clytia hemisphaerica|type=CDS|length=912bp|location=Sequence derived from alignment at scaffold_142:846441..847350- (Clytia hemisphaerica)
ATGGAACGTGACCCTAACAGAACACCTGTTCTTTGCAATACAATTGTTTA
CGTGTGGAAGAAGGAACGTTTTTGTCATGTGAAATGCTTTTGGATAAAAT
ACAAAGTGCCGCACTACATCCGTTGTGCGAAGTAGATGGACGGAAGGTCA
ACGAGCATTCAAATGCTGGTAACATATCTTGTCATCCTAGCTGTTTGTTT
AGAGAGGGTCCAAAGCACTTGTGGTGGTTATACCCAAGAACAATGCGCAG
ATTCTTCCACTATGCATCAGTTCAAGAGATGTGTTCACAAAGTTTTCCAT
GCGTGTCTAAAAAGACATCCGTTGAAACGTGACCCTCACGAAGAGAACGT
GGGGCGTGATCTTCACGGACTGAACATGGAGCGCGACCCTCACGGAATGA
GTGTGAAACGTGACCCTCAAGGAATGAACGTGGAACGTGACCCTCAAGGA
ATGAACATGGAACGTGACCCTAACAGAACACCTGTTCTTTGCAATACAAT
TGTTTACGTGTGGAAGAAGGAACGTTTTTGTCATGTGAAATGCTTTTGGA
TAAAATACAAAGTGCCGCACTACATCCGTTGTGCGAAGTAGATGGACGGA
AGGTCAACGAGCATTCAAATGCTGGTAACATATCTTGTCATCCTAGCTGT
TTGTTTAGAGAGGGTCCAAAGCACTTGTGGTGGTTATACCCAAGAACAAT
GCGCAGATTCTTCCACTATGCATCAGTTCAAGAGATGTGTTCACAAAGTT
TTCCATGCGTGTCTAAAAAGACATCCGTTGAAACGTGACCCTCACGAAGA
GAACGTGGGGCGTGATCTTCACGGACTGAACATGGAGCGCGACCCTCACG
GAATGAGTGTGAAACGTGACCCTCAAGGAATGAACGTGGAACGTGACCCT
CAAGGAATGAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048398-exon-scaffold_142-1575043694:846844..847350 | TCONS_00048398-exon-scaffold_142-1575043694:846844..847350 | Clytia hemisphaerica | exon |
| TCONS_00048398-exon-scaffold_142-1575043694:846441..846735 | TCONS_00048398-exon-scaffold_142-1575043694:846441..846735 | Clytia hemisphaerica | exon |
| TCONS_00048398-exon-scaffold_142-1510915933:846844..847350 | TCONS_00048398-exon-scaffold_142-1510915933:846844..847350 | Clytia hemisphaerica | exon |
| TCONS_00048398-exon-scaffold_142-1510915933:846441..846735 | TCONS_00048398-exon-scaffold_142-1510915933:846441..846735 | Clytia hemisphaerica | exon |
| TCONS_00048398-exon-scaffold_142-1491911889:846844..847350 | TCONS_00048398-exon-scaffold_142-1491911889:846844..847350 | Clytia hemisphaerica | exon |
| TCONS_00048398-exon-scaffold_142-1491911889:846441..846735 | TCONS_00048398-exon-scaffold_142-1491911889:846441..846735 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_142 | supercontig | scaffold_142:846441..847350 - |
Blast
The following BLAST results are available for this feature:
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