TCONS_00048415 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048415
Unique NameTCONS_00048415
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1310

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048415 ID=TCONS_00048415|Name=TCONS_00048415|organism=Clytia hemisphaerica|type=transcript|length=1310bp
ATATAGTGATACTCGAGGTGGTACTTCAAAGTTAGATTTTGCGGCAATCA
TAAAATCGTCAAAAACGAAATTGTAAGAGCGAATTTTCTGTGATTGGCTG
TTATGATTGTATTGTAACACACTTCAGAAATGAGTTTCCGAGTAGTTTCA
AAGAAGGAACGACTATGGACCATTCTACTTTCTCACtccatttgtttttc
tttgattgtatGGCGAATNTTATGAACCATTCTACTTTCTCACtccattt
gtttttctttgattgtatGGCGAATGTTGATCAACCTCAACGAAGCTGGA
TACGAGCTGAAAGATCCTAAATATATGATCGGCGTCTTTTTGTCGGCGAT
CGGTGGGATCATTTTGGTGGCTTCATCTCCAATCATTTATAAAGAAGGAA
GAAAACTGAGCAACGTGAATCTATCCAACTTGGCGTTTATTTGTGCAATT
GCCGGTCAATATGGAATTACAATACATTGTGCTCATGTCAATGCTTCTAA
AAAGACGTCTGACAGCAATTGCAAGAGCTGTATGACCATAGAGGACCACG
ACCGATTtacattttatgttttgttgATGACCTTCCCAATGCTCATATTC
ACTGCAACTATTTATCCATATCCTAAACATAACAAAGATGCGAGACACTA
TGGAGATAacagagaaaatcaaaacaggaGGAAGACGAACCGAAATAATG
AGATGATGCGCCAGCAAAACAACCATGGACACTATCATTGTGCTTATCAT
GCTACGTTTGACACCCTGGACTACGCTGACCTCGTGTTTGGGACAGTTGG
ATGTTTTCTGAACTACAGCTCAGGCTGGTTGGCAGCCTATTATGCAATTC
TCGGAATTTCGCCATTTTTAACGGCTTTTAGTTACGGATTGGAGCAAAGG
ATGATAGGAAATCTGTCGGGGATGCATAAAGATCTTATACTGACAATTCT
TAGACTTTTGATCAATGACGTTGGGTTTTTTGTTCTGAGAATGACAGTGA
TGGTCAAAGAAGGATTTGCTCATCCAATAATCATTTTCACCATCAAAGAG
GTGGTCAGCTTTTTATTTAGGACAGGGATGATCTATAAAGCGCACTCAAT
CACTGAGAAGAATGCTACAGACAAAAGACAAACAACGACAATTTCTGTGA
ATAATAAACCTGCTCCAAatttgaaagcaaaaaaaattgctttcCGTCAA
GATGAGTTCGTAATGTGGTAGAATATTTTGGCTTGCAGAACAAACATACG
GACAGATCTACTATAGACTCGTATGGGGATACCTTTTttacccagggggg
ggggtactta
Run BLAST on NCBI

protein sequence of TCONS_00048415-protein

>TCONS_00048415-protein ID=TCONS_00048415-protein|Name=TCONS_00048415-protein|organism=Clytia hemisphaerica|type=polypeptide|length=315bp
MLINLNEAGYELKDPKYMIGVFLSAIGGIILVASSPIIYKEGRKLSNVNL
SNLAFICAIAGQYGITIHCAHVNASKKTSDSNCKSCMTIEDHDRFTFYVL
LMTFPMLIFTATIYPYPKHNKDARHYGDNRENQNRRKTNRNNEMMRQQNN
HGHYHCAYHATFDTLDYADLVFGTVGCFLNYSSGWLAAYYAILGISPFLT
AFSYGLEQRMIGNLSGMHKDLILTILRLLINDVGFFVLRMTVMVKEGFAH
PIIIFTIKEVVSFLFRTGMIYKAHSITEKNATDKRQTTTISVNNKPAPNL
KAKKIAFRQDEFVMW
Run BLAST on NCBI

transcript from alignment at scaffold_142:901197..903237-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048415 ID=TCONS_00048415|Name=TCONS_00048415|organism=Clytia hemisphaerica|type=transcript|length=2041bp|location=Sequence derived from alignment at scaffold_142:901197..903237- (Clytia hemisphaerica)
ATATAGTGATACTCGAGGTGGTACTTCAAAGTTAGATTTTGCGGCAATCA
TAAAATCGTCAAAAACGAAATTGTAAGAGCGAATTTTCTGTGATTGGCTG
TTATGATTGTATTGTAACACACTTCAGAAATGAGTTTCCGAGTAGTTTCA
AAGAAGGAACGACTATGGACCATTCTACTTTCTCACTCCATTTGTTTTTC
TTTGATTGTATGGCGAATNTTATGAACCATTCTACTTTCTCACTCCATTT
GTTTTTCTTTGATTGTATGGCGAATGTTGATCAACCTCAACGAAGCTGGA
TACGAGCTGAAAGATCCTAAATATATGATCGGCGTCTTTTTGTCGGCGAT
CGGTGGGATCATTTTGGTGGCTTCATCTCCAATCATTTATAAAGAAGGGT
AAGTTGTTGTTTCCAATCCCTTTATAAGTACATAATATTTCACAAAACTG
GCAAAATTGACTTTTTAAAACTTATTGACATAGGTTTTTCTTTTGAAAGA
TATATTCTCAATACCAACAATGGTCTCATAAAACGATTTTGGCAAGATAG
GAAAGTAAGGCCTACATTTTTGGGTTGATGCACTTTATCGACTAAAGGGG
CAGGGATAAACTATACTGGGTAAAATAAGAAAGGGAATAGACAATCTCAA
ACAAGGTCAATAAAAAGTGGATAATTTTGGAGGCGTGATAAATTTAAGTA
GGCAGATAAGTCTAGGGTGGAGTAAAACAGGAAAAGAAGCTTCGTTCCAA
ACTCAACTGGTGCTTTTTCTCGTATAACGCAATGATGGCTGTAAGCTCTA
CACAATATATTTTCCACGTTTACTATACTTTCAACACGGACGATAGCATC
GTCTAGACAGTGAAGTAATTCTATTAAGGCTCTGTTTCTCCTTTTCACTC
TTAGAAGAAAACTGAGCAACGTGAATCTATCCAACTTGGCGTTTATTTGT
GCAATTGCCGGTCAATATGGAATTACAATACATTGTGCTCATGTCAATGC
TTCTAAAAAGACGTCTGACAGCAATTGCAAGAGCTGTATGGTAAGTCCTA
TGCAGAAATATTGATTGATTTTTACTGTATTTAGGGTAATTTCAAAATCA
CCAGTATTTAAGAATTGGTTGTAGAATATAAATATGTCGTGGAGGGATAT
ACAATCTTTTTCGGTATATACTGTCGTTGGCAGTATCAAACTTTTTACCA
ATTTGAAATTTCTGTCCGAACGCACCTAAAAAAGTGGAGTTCCCATTTCC
CTATCTTACTTTCAGACCATAGAGGACCACGACCGATTTACATTTTATGT
TTTGTTGATGACCTTCCCAATGCTCATATTCACTGCAACTATTTATCCAT
ATCCTAAACATAACAAAGATGCGAGACACTATGGAGATAACAGAGAAAAT
CAAAACAGGAGGAAGACGAACCGAAATAATGAGATGATGCGCCAGCAAAA
CAACCATGGACACTATCATTGTGCTTATCATGCTACGTTTGACACCCTGG
ACTACGCTGACCTCGTGTTTGGGACAGTTGGATGTTTTCTGAACTACAGC
TCAGGCTGGTTGGCAGCCTATTATGCAATTCTCGGAATTTCGCCATTTTT
AACGGCTTTTAGTTACGGATTGGAGCAAAGGATGATAGGAAATCTGTCGG
GGATGCATAAAGATCTTATACTGACAATTCTTAGACTTTTGATCAATGAC
GTTGGGTTTTTTGTTCTGAGAATGACAGTGATGGTCAAAGAAGGATTTGC
TCATCCAATAATCATTTTCACCATCAAAGAGGTGGTCAGCTTTTTATTTA
GGACAGGGATGATCTATAAAGCGCACTCAATCACTGAGAAGAATGCTACA
GACAAAAGACAAACAACGACAATTTCTGTGAATAATAAACCTGCTCCAAA
TTTGAAAGCAAAAAAAATTGCTTTCCGTCAAGATGAGTTCGTAATGTGGT
AGAATATTTTGGCTTGCAGAACAAACATACGGACAGATCTACTATAGACT
CGTATGGGGATACCTTTTTTACCCAGGGGGGGGGGTACTTA

Coding sequence (CDS) from alignment at scaffold_142:901197..903237-

>TCONS_00048415 ID=TCONS_00048415|Name=TCONS_00048415|organism=Clytia hemisphaerica|type=CDS|length=2844bp|location=Sequence derived from alignment at scaffold_142:901197..903237- (Clytia hemisphaerica)
ACCATAGAGGACCACGACCGATTTACATTTTATGTTTTGTTGATGACCTT
CCCAATGCTCATATTCACTGCAACTATTTATCCATATCCTAAACATAACA
AAGATGCGAGACACTATGGAGATAACAGAGAAAATCAAAACAGGAGGAAG
ACGAACCGAAATAATGAGATGATGCGCCAGCAAAACAACCATGGACACTA
TCATTGTGCTTATCATGCTACGTTTGACACCCTGGACTACGCTGACCTCG
TGTTTGGGACAGTTGGATGTTTTCTGAACTACAGCTCAGGCTGGTTGGCA
GCCTATTATGCAATTCTCGGAATTTCGCCATTTTTAACGGCTTTTAGTTA
CGGATTGGAGCAAAGGATGATAGGAAATCTGTCGGGGATGCATAAAGATC
TTATACTGACAATTCTTAGACTTTTGATCAATGACGTTGGGTTTTTTGTT
CTGAGAATGACAGTGATGGTCAAAGAAGGATTTGCTCATCCAATAATCAT
TTTCACCATCAAAGAGGTGGTCAGCTTTTTATTTAGGACAGGGATGATCT
ATAAAGCGCACTCAATCACTGAGAAGAATGCTACAGACAAAAGACAAACA
ACGACAATTTCTGTGAATAATAAACCTGCTCCAAATTTGAAAGCAAAAAA
AATTGCTTTCCGTCAAGATGAGTTCGTAATGTGGTAGAAGAAAACTGAGC
AACGTGAATCTATCCAACTTGGCGTTTATTTGTGCAATTGCCGGTCAATA
TGGAATTACAATACATTGTGCTCATGTCAATGCTTCTAAAAAGACGTCTG
ACAGCAATTGCAAGAGCTGTATGATGTTGATCAACCTCAACGAAGCTGGA
TACGAGCTGAAAGATCCTAAATATATGATCGGCGTCTTTTTGTCGGCGAT
CGGTGGGATCATTTTGGTGGCTTCATCTCCAATCATTTATAAAGAAGGAC
CATAGAGGACCACGACCGATTTACATTTTATGTTTTGTTGATGACCTTCC
CAATGCTCATATTCACTGCAACTATTTATCCATATCCTAAACATAACAAA
GATGCGAGACACTATGGAGATAACAGAGAAAATCAAAACAGGAGGAAGAC
GAACCGAAATAATGAGATGATGCGCCAGCAAAACAACCATGGACACTATC
ATTGTGCTTATCATGCTACGTTTGACACCCTGGACTACGCTGACCTCGTG
TTTGGGACAGTTGGATGTTTTCTGAACTACAGCTCAGGCTGGTTGGCAGC
CTATTATGCAATTCTCGGAATTTCGCCATTTTTAACGGCTTTTAGTTACG
GATTGGAGCAAAGGATGATAGGAAATCTGTCGGGGATGCATAAAGATCTT
ATACTGACAATTCTTAGACTTTTGATCAATGACGTTGGGTTTTTTGTTCT
GAGAATGACAGTGATGGTCAAAGAAGGATTTGCTCATCCAATAATCATTT
TCACCATCAAAGAGGTGGTCAGCTTTTTATTTAGGACAGGGATGATCTAT
AAAGCGCACTCAATCACTGAGAAGAATGCTACAGACAAAAGACAAACAAC
GACAATTTCTGTGAATAATAAACCTGCTCCAAATTTGAAAGCAAAAAAAA
TTGCTTTCCGTCAAGATGAGTTCGTAATGTGGTAGAAGAAAACTGAGCAA
CGTGAATCTATCCAACTTGGCGTTTATTTGTGCAATTGCCGGTCAATATG
GAATTACAATACATTGTGCTCATGTCAATGCTTCTAAAAAGACGTCTGAC
AGCAATTGCAAGAGCTGTATGATGTTGATCAACCTCAACGAAGCTGGATA
CGAGCTGAAAGATCCTAAATATATGATCGGCGTCTTTTTGTCGGCGATCG
GTGGGATCATTTTGGTGGCTTCATCTCCAATCATTTATAAAGAAGGACCA
TAGAGGACCACGACCGATTTACATTTTATGTTTTGTTGATGACCTTCCCA
ATGCTCATATTCACTGCAACTATTTATCCATATCCTAAACATAACAAAGA
TGCGAGACACTATGGAGATAACAGAGAAAATCAAAACAGGAGGAAGACGA
ACCGAAATAATGAGATGATGCGCCAGCAAAACAACCATGGACACTATCAT
TGTGCTTATCATGCTACGTTTGACACCCTGGACTACGCTGACCTCGTGTT
TGGGACAGTTGGATGTTTTCTGAACTACAGCTCAGGCTGGTTGGCAGCCT
ATTATGCAATTCTCGGAATTTCGCCATTTTTAACGGCTTTTAGTTACGGA
TTGGAGCAAAGGATGATAGGAAATCTGTCGGGGATGCATAAAGATCTTAT
ACTGACAATTCTTAGACTTTTGATCAATGACGTTGGGTTTTTTGTTCTGA
GAATGACAGTGATGGTCAAAGAAGGATTTGCTCATCCAATAATCATTTTC
ACCATCAAAGAGGTGGTCAGCTTTTTATTTAGGACAGGGATGATCTATAA
AGCGCACTCAATCACTGAGAAGAATGCTACAGACAAAAGACAAACAACGA
CAATTTCTGTGAATAATAAACCTGCTCCAAATTTGAAAGCAAAAAAAATT
GCTTTCCGTCAAGATGAGTTCGTAATGTGGTAGAAGAAAACTGAGCAACG
TGAATCTATCCAACTTGGCGTTTATTTGTGCAATTGCCGGTCAATATGGA
ATTACAATACATTGTGCTCATGTCAATGCTTCTAAAAAGACGTCTGACAG
CAATTGCAAGAGCTGTATGATGTTGATCAACCTCAACGAAGCTGGATACG
AGCTGAAAGATCCTAAATATATGATCGGCGTCTTTTTGTCGGCGATCGGT
GGGATCATTTTGGTGGCTTCATCTCCAATCATTTATAAAGAAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030797XLOC_030797Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048415-proteinTCONS_00048415-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048415-exon-scaffold_142-1575043694:902840..903237TCONS_00048415-exon-scaffold_142-1575043694:902840..903237Clytia hemisphaericaexon
TCONS_00048415-exon-scaffold_142-1575043694:902198..902333TCONS_00048415-exon-scaffold_142-1575043694:902198..902333Clytia hemisphaericaexon
TCONS_00048415-exon-scaffold_142-1575043694:901197..901972TCONS_00048415-exon-scaffold_142-1575043694:901197..901972Clytia hemisphaericaexon
TCONS_00048415-exon-scaffold_142-1510915933:902840..903237TCONS_00048415-exon-scaffold_142-1510915933:902840..903237Clytia hemisphaericaexon
TCONS_00048415-exon-scaffold_142-1510915933:902198..902333TCONS_00048415-exon-scaffold_142-1510915933:902198..902333Clytia hemisphaericaexon
TCONS_00048415-exon-scaffold_142-1510915933:901197..901972TCONS_00048415-exon-scaffold_142-1510915933:901197..901972Clytia hemisphaericaexon
TCONS_00048415-exon-scaffold_142-1491911889:902840..903237TCONS_00048415-exon-scaffold_142-1491911889:902840..903237Clytia hemisphaericaexon
TCONS_00048415-exon-scaffold_142-1491911889:902198..902333TCONS_00048415-exon-scaffold_142-1491911889:902198..902333Clytia hemisphaericaexon
TCONS_00048415-exon-scaffold_142-1491911889:901197..901972TCONS_00048415-exon-scaffold_142-1491911889:901197..901972Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_142supercontigscaffold_142:901197..903237 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.96453	2.48239	1.09454	0.713893	0.0434548	0.0686771	0	0.0387844	0.0271539	0	0	0	0.0428613	0.0667678	0.109784	0.0589077	1.30625	1.78515	0.068508	0	2.80397	2.05152	2.6232	3.39256	1.21088	2.19224	0.132553	0.0471548	1.14449	1.494
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048415 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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