TCONS_00048418 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048418
Unique NameTCONS_00048418
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length4146

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048418 ID=TCONS_00048418|Name=TCONS_00048418|organism=Clytia hemisphaerica|type=transcript|length=4146bp
GATCCTGTCGCATTGTGTGATTGGAGAAAGATTTTCTTTGTAAGGGATCT
TTTGACCAGAACATGCCAGGGACCTGTTAGTTTTTTATCATAATAAGTGT
CATTTTTGTGACAACAAAAGGTCACATCACATGCCAAGGAATTTAAGATG
CTTATTTATGACCGTCACcgataaataaaaaacatattgTTAAAGTATTT
GAATCCTTAGTCGCTTGGAATCATACCTCCAGAGCTGTTTGAAACTAGTC
TTGTgcttcaaatatatttttcatttttctaaaaatttgctTCTTATTTG
GGGTTGAGCTTGTTGCATCTTCTTGTGTGATTGGCAAATCATTCTCCATT
GTTATGAAAAACTCGAAAGCCACATACGATTACGTCATGGATTTGATCAG
GGAACAATCACATTCAGCGGCTATCGGTTTATCGACTTGTCATGGCTTCA
GGGTCAACACTCGTCAAGAGAGGGAGGACATCTTCTGGTCAGATATCCCA
CAgaattttcacattttgaacAAAGAAGAGCTGAAAAGGTTCCCGCCAGA
AATCAAATCGGGAGTTGGCTACACGTCTGTCTTCATCGAAGCGAAGAAAT
TGATTCCTTATTACATGAAAGAGATTGAGAAGATGGGTGGAAAGTTCACT
CAAAAGGATGTCAAATCGATCAAAGATATTGGTACGAACTATGACGTCAT
CGTCAATTGCACAGGCCTTGGGTCACGTGACTTAGTGGGTGACAAAAAAG
TGTATCCACTAAGAGGACAGATTATGAAgGTTAAAGCGCCGTGGTGTCGT
GAATTTGTAATGTGGCAGGAGAAAGAACATCAAGCCTACATACTACCAAA
TCAAGATTTTGTGGTGTTGGGAGGAACAGCTCATGCGAGCGAAAATCCTG
ACGTTCTTCTGGAACACAAACAATGGATCAAAAGCACCACTACTAAACTC
ATGCCTAGTCTTGCGGACGCTGAGCATGTAGGAGACTGGGTTGGATTCCG
CCCAGCACGTGAAGGAGGCGAAAGATCGGAGATTGAGGATTACGATATTG
GTGATCACAAAACAGTGAAGGTTGTTCATAGTTATGGTCACGGTGGATCT
GGTTTGACCGTCTTTTGGGGATGTGCTGAAGACACAATCAACCTCATATA
CCATTGTCTGCCAACagtgaaaatgtcaaaattgtaATTTCTAAATCTCG
TCATACTAACAGATGACTGAAACTGCTTCCTTCTTTGACATATGAactat
acgttttttataagaacatccaaagtttttgatgccttcggattttctta
actttttcagatttaagtctaaaaatgttccatgtttttacatagtttgt
tcttataaaaaacgtgtacttaagttaatgcattatttttattttattgt
aatGAAGAATctgtaaatattttgataagTTTTGATTGTATATACTTGAT
AAAACCACATTGAATCATGTAGGTTTTTGTCCCTTAATGTTGACCAAGTA
GCATATATCATCGTGTCCTTCAAGTCAATAAGCATTAACACGCTATATAG
GTTTTCATGTTTCCTTAAGTTTCGTGacttccaccattatggaaacagGT
TTTCAAATCTGTAGTGGCGATCACTTCCGCTGATCGAActtttgcttcca
taatggcggatattACGTAACTTGACAAATTAGAAACACATCTAAACATG
GGTCCGGCAAATGCTTTCCTGATTTTGCTGACTTGAAGTTGTTACTGTTT
GTTCCTTTGCTTTTTCTTCATCAGAATGAAAATTCTCCTTGTTTACATTC
TCCTTTTCACCAGTATTGCAGAAGCTGAAACttattgttttgtttaaaac
atATGGTATCCCTTTTTCTTAAAAGACATCAATTGCTTCCATCTCCTCAC
GCAAACTCGTcacgttttcaaatttgaatttgggtatatttatttttagg
aGGTATGTAATCTTCAATCTCTGTTCTCCTATATAATTGCTTTAGCATCA
ATTGTCATACTGGTTCAGTGGTATTGTCTGGTTTAAAGTGGTGGataatg
attttcttttctaatgGTACGTAAACATCATCGCAGTATAACTAATGATG
CGTGCTTCACTGTGCCACTTAATTTCCTTTCACTTTTTATGGAGCGAGAT
TTGAAGCTTGTCTTCTTAAAAGTACATTTGCTGTCTTTGGTGGAGCTTTG
GTTGTGGTAACTGCAATCCGCCTGGCAGACCTCCATGTAGTGGTTCTGAC
CAATggcttctttttgtttttctgatGTTTGGGTTGATGAGGGTCTCGGT
ATGTGCTTTGGAGCTCAATACTCTCTAAAAGAATAGGGTATAAATGACGa
atgaatgaaattttgtttttggccTTTAGTATTCTTGAAATCTTCAGGTA
TGACTTATCACAGTCAATGAACCATCATAATTGATAACTACCAGACTAAA
AGTACCGAAAATGCGATATTGTAATCATGCATTTTAAATCCTGAAGAGCC
TTACCTTTCAGGCTGATATCTTCTTCTGTTGTGGCTGTGAAAAGCGGATT
ATATTTCAAACCCAGTTGTCCTTTGTCTAAGgaagtgaaaaatgaaaata
tggtAAATTATATTCTAGGTTCTACTGAAAGATTTCGTCTCAATGCtgtg
atttttttctatttagtttTACTTGACTCTGGTCTGACTACGAGTTTGTT
TTGGCGGTTTAGGTTTAATGGACGTTATAAACTTAGCGATGAGAATATAA
CTCAAAAGGCTATAGGTTCTATTATACTTTCAATTTGCACAATAACCAGA
ATTTCACGAGGTTCGATGATGGTGGAGCCATATTCTTTCATATGTTGTTC
AATGTGTAACAGTTTACCAGTACTTGTTGCAAAATCTATCCtccctaaaa
ataaaaattaactcATTTTCAATGTGTTACAGTTTACCAGCACTTGTTGC
AAAATATATCCtccctaaaaataaaaattaacttGTTTTCAATGTGCAAC
AGTTTACCAGTACTTGTTGCAAAATCTATCCTccctcaaaataaaaatta
acttGTTTTCAATGTGCAACAGTTTACCAGTACTCGTTGCAAAATCTATC
CTccctcaaaataaaaattaacttGTTTTCAATGTGTTACAGTTTACCAG
TACTTGTTGCAAAATCTATCCtccctaaaaataaaaattaactcATTTTC
AATGTGCAACAGTTTACCAGTACTTGTTGTAAAATCTATCCTccctcaaa
ataaaaattaacttGTTTTCAATGTGTTACAGTTTACCAGTACTTGTTGC
AAAATCTATCCtccctaaaaataaaaattaactcATTTTCAATGTGCAAC
AGTTTACCAGTACTTGTTGCAAAATCTATCCTccctcaaaataaaaatta
acttGTTTTCAATGTGTTACAGTTTACCAGTACTTGTTGCAAAATCTATC
CTccctcaaaataaaaattaactcATTTTCAATGTGTTACAGTTTACCAG
TACTTGTTGCAAAATCTATCCTccctcaaaataaaaattaactcATTTTC
AATGTGTTACAGTTTACCAGTACTCGTTGCAAAATCTATCCTccctcaaa
ataaaaattaactcATTTTCAATGTGTTACAGTTTACCAGTACTCGTTGC
AAAATCTATCCTccctcaaaataaaaattaactcATTTTCAATGTGTTAC
AGTTTACCAGTACTTGTTGCAAAATATATCCTccctcaaaataaaaatta
actcATTTTCAATGTGTTACAGTTTACCAGTACTTGTTGCAAAATCTATC
CTCCctccaaaataaaaattaactcATTTTCAATGTGTTACAGTTTACCA
GTACTTGTTGCAAAATCTATCCTccctcaaaataaaaattaactcATTTT
CAATGTGCAACAGTTTACCAGTACTTGTTGCAAAATCTATCCTccctcaa
aataaaaattaacttGTTTTCAATGTGTTACAGTTTACCAGTACTTGTTG
CAAAATCTATCCTccctcaaaataaaaattaactcATTTTCAATGTGTTA
CAGTTTACCAGTACTCGTTGCAAAATCTATCCTccctcaaaataaaaatt
aactcATTTTCAATGTGTTACAGTTTACCAGTACTCGTTGCAAAAT
Run BLAST on NCBI

transcript from alignment at scaffold_142:921202..931686-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048418 ID=TCONS_00048418|Name=TCONS_00048418|organism=Clytia hemisphaerica|type=transcript|length=10485bp|location=Sequence derived from alignment at scaffold_142:921202..931686- (Clytia hemisphaerica)
GATCCTGTCGCATTGTGTGATTGGAGAAAGATTTTCTTTGTAAGGGATCT
TTTGACCAGAACATGCCAGGGACCTGTTAGTTTTTTATCATAATAAGTGT
CATTTTTGTGACAACAAAAGGTCACATCACATGCCAAGGAATTTAAGATG
CTTATTTATGACCGTCACCGATAAATAAAAAACATATTGTTAAAGTATTT
GAATCCTTAGTCGCTTGGAATCATACCTCCAGAGCTGTTTGAAACTAGTC
TTGTGCTTCAAATATATTTTTCATTTTTCTAAAAATTTGCTTCTTATTTG
GGGTTGAGCTTGTTGCATCTTCTTGTGTGATTGGCAAATCATTCTCCATT
GTTATGTAAGTTTAAGTTTGACACCGTAGTCGAGGATGCGACCTGAAGGC
TCCCTTTTTCTCAGTAGTCTATCTGAGGGTAGGAGAGGGCACTTTTTCTT
TCCCTGAATTTCACCCCTTATCCTTGACCTGTTCTCTTTAGTTGCTGAGC
ATCAAGTAGAGAGGCATCAAGTAGTATTATGTCTATCTTTGGTGTGACCC
GACTAGTGTCCACCTACATTACTCCCTTCTTACTGGGACCCCTTCCCACT
GGAAAAATTGGCTAAAATATAGTCCCTTATGGAAAATTGTCCTCTTATTT
TTGTCCTCACTGAAAGTAATCAAATAAACCAATCCTCACTGTAAAATACT
TTGCAATTTTTCCCATCTCACTGAATTTTCTGACTTGAAAACAAAAGAAT
TCCAATCCCCAGCCATAGAAAGTATGGGAATATCAATCCCCATTGAGTTT
CAGTCCGTTATTTTTACCCCCACTGGCTGAAAAAATCTTACTGGATCAGT
GAGAAGGGGGTGTCGCATCCTTCCACATCGTAGCAGGATGCTTTATTTTT
ATGTCTACCTATTTAATAGTAAAACATACTATTTTCTAGAATCGTGGTTT
TTTCTCAATAGATCTTTTAACATAACACAACGGAAGAATGCTTCTTTCGA
AAGATTGAAATTAATTTTAGAGATAACTAAAATTTTATTATAGTATGCGA
AACGTAATAATGTACGAAGTAAATAATATGTACTCTGCATCACCTGACCC
CGAGAATGTAGTAAACCCCTATATATGTAGGTTTCTCTTTTATTAGCATT
GTAGACCTAGCGATGGTTCAGCTTCATAAAAAGTTGTTTCAGAGCGAACT
GTTACATATTACTTATTATTTCTAGACATTAAATTTTAACTTAAAGTAAT
TTTTTTTAACGGAAATCTGACTCGAAGTTGATTGGATACTACCCGAATTG
AGGCATTTTTTTAACAAATCTTCTCTAAATCGAAATCTATTGGAATTAAG
TTATGATGATAGGGTATTTTCTTACTCCTAATGAACTAAGACAATTGGGA
AAATAGTCTATTTCAAATTTCATTGTCCTATCTTAGATATTTTGACGAAA
ATGTTTGACCTCCATTTTTGTGGAGTCTTCAAAACCCGACATAAAAAGTC
TGTCAAATTATAAAACTTGTTTGTTAGACTTTCATAACATGGAATTAATA
CCTGCTATTATTGATATGTTGACATGTTGAGCTTTTACAAAGAATTAACG
AAAGATTAATTTTACATTATACCCCTGTGTCACAGATCCGCCGGGACCCC
AGCCCCACCAGAAAATTTGCCTAAGTTTGAAACAATAGATTTCGATCCCC
TTGGGACTTTATGATTGAAATTTTTGTCCGCTCTGTGGGAAAAATTTCCA
TCGGGCTGTGAGGTAGAGTTGTTGTAACATTATTTACATATTTAAACCCA
AAATTTTCATACAAAAATTGTACTAAGACTTTCGAGAGCTCAAAATTTCG
TTGAAACGTTCAATGTTTTTTGATATGCAAATCTACATCTTTCAGGTCTG
TTTCAAATTTCACCTACATTCTCGGGGTCAGAGATACTGTACTTTAAAAA
GGCATTCTTCTTTGTATAAACAATTGCCCTATATTTGCTATGGTGAGCAT
TTTAAAATATATTGCTGACACTCGCTTATAATAATGTCCAGCAATATATT
GTGCAGTGTATGTAGCCCTTAACAATTTTAATTTTGTCTCTTGATCATTT
GAAGTACCATTTGTTTTAAAGTGAAGACAGATAACATTTTTTGCTGACGG
TCGCGCAAAAAATCTCACATCTTGTGTTTCAATATTTCTTATATTTCAAT
AAATTCTTTCCAAACTAAAATGAATAATTGAGTGCAATTTTTATCAATAA
ATAAAGAGACATCCATCCTAGATGTAAACAGCGTAAATATTCCTTCTTAC
TAAATTTTCCATTTCTTTTAGTTATAGATATTTTTCTGGTGGAATTCGGA
TAATCCGAAATGGTTGTTCAAATTGCATTTCTCGGCGCCGGTATTATTTC
CACATCTACCGCCTTTCGGCTGTTGAAACAACGCCCTGATTTTGAAGTGA
CGATCATTGCAAAGAGCTTCTCCCCAAACACAACGAGCGATGGAGCTGCT
GGATTTTGGGGACCTTATTTCTCTGGCACTCCTGAAAAGATTGTTTTGTA
AGACTCAGTACTAAAAATAAAAAAACCTCAAAAATTACTCTCATCATGTC
ACTCTTTTTCTTCGACAATGCGCATTTCATGTAGATCTTTTTGTTATATA
GGTTTCTGCTTGTCCTCCATCGAGTTTCTTAGATATATAGGAAGTATATC
TATAGAGGTCTATGAATCAAACGATATGCTATACGGTAAGACAATTTAGA
GAAAATCCTATCTTATGTCAGTTCTATTTTATCAGAGCAAAAGTTCAGTA
TTTTACCTTTCTTTTCAAGTTCTTTGAATCAAACCATGAAAAAAATATTT
TAAAGTTTTTCATTTCATATTTATATCTTTTACAGGAAAAACTCGAAAGC
CACATACGATTACGTCATGGATTTGATCAGGGAACAATCACATTCAGCGG
CTATCGGTTTATCGACTTGTCATGGCTTCAGGGTCAACACTCGTCAAGAG
AGGGAGGTAACAATCAAAACAATCTGAAGCTTTGGTGACGTCATATTCCT
TGACTCCTGGGGTTAAGATTGTCTTACGATTATGAAATTTAAAGATATTA
TTCTTATGATGTAAGAAGGAGACTGGTATCTTATGCTAACAGAATATTAG
AAAAGAATCTCGCAAACTTATCATTCTCGAAATTCTCAAAATTTGTGCTC
GCATGGCCGGGAGGGGAGGGGAAAGGTGTTTTTCTTTTGTTTAAAAATGC
TGTATAGTATTATGTCCGTTAATCTCTACACCTAGACGTCTGTTACCGTT
TTATACTTTCTTTTTCAGGACATCTTCTGGTCAGATATCCCACAGAATTT
TCACATTTTGAACAAAGAAGAGCTGAAAAGGTTCCCGCCAGAAATCAAGT
ATAAATACCTTTCACATCTCTCTTTCCGAAATCAACCATTCATTTGTCTA
CAGTTGACTTTCACCTATTCGAACTCGAATGGGGAATCTTATTTGTTCGA
ATTACGGAGAGGTTCGAATAACTGAGAGGTTCGAATTAACAAGAGTCCAC
TTCGATTGCATTGTGGAAGATCATACAACTGAATATTCTAAATATTCTAA
TTTTTAAAAATGCCAGCAACTCTCTCCAATCCGAACCTGTATTAATCAAG
TCTTTCTGCGATTTGAATCTAGACATTGTTCTCTCAAATGAAATGTCGTA
AAAATACTCTCCGTAATCTGAATTATTCTATATGATTCGAAGGATTGGCC
TAGTAAAGATCGAATAAGAGAGAGAATCAACTATGGTTCCACGAAAGGGC
TAGGCAGGCTGCTGTTTATTATCTTCTGAGAACTATTGATCTGACAATCC
AAATCATTTTTAGATCGGGAGTTGGCTACACGTCTGTCTTCATCGAAGCG
AAGAAATTGATTCCTTATTACATGAAAGAGTAAGTCCCGATATGTTTGAC
AGTATAAATGTTTTGTTGATCCAAACGAGAAAAAATCCCTTAAGAAATTG
TTAGATTCTAGTAGTGGAATCCTGAGAAAGCTTCAACTTGACTCTTTTCT
GTTAGTTTTGCAAAGTTTTTCAATATAATGCAAGATTTACATAATTGAGT
ATTTTGAGTTAAATATATGCTAGTAATGAGGAATATTTTTCTTTTCGAAT
TTTCAGGATTGAGAAGATGGGTGGAAAGTTCACTCAAAAGGATGTCAAAT
CGATCAAAGATGTAGCTTTTTTTCAGAAAACTCTTCACAAAATTTTCTTC
TTCTTTTGTAGACACCTTTCTCTTGCAGTTAAGGGTTGGTAAATTTCCGC
AGCACTTGACCTTTTTTCTTCACAGTTCTCATGCCAATCTAAGCTCTTTT
TCTCTCTATTTGCAGATTGGTACGAACTATGACGTCATCGTCAATTGCAC
AGGCCTTGGGTCACGTGACTTAGTGGGTGACAAAAAAGTGTATCCACTAA
GAGGACAGATTATGAAGGTGATTGTTTTTTTTTCGTTCTCCGTCTCTCTC
GAATATTTTGCTTTGAAAGTAATACAGGTAGAGAAAACATCATCTACCTC
CTACCTCTACCAGCACGGACTTGCATCCGTGAGGCACTCAAGATGAGAAA
AATTGCATTCTAAGGGATTTTGAAAATCTTACTAATTTTGCCTGAAAATG
GCCAAAATATTTCAAGAAAATGCACCGTAAGGGTCGTTTTTTCGCTCAAA
TTTGCTCAAATTTTGCCTGTATGAGTCTGACGTATGGTCGTTTTTGAAAA
GAGTGCCCCCGGGCATTGCATTTGATAAGTCTTTTGTGCAGCCCGTGTCG
TTTAGTCGTTTAGTCGTTTGTTAACGTGTCAACCGGTGCGGCTTATCTTC
CCAACATATATCTGATGTTGGATGTAAAGATATTCCATTTGAAATTTAAT
ATATGAGAAAAATCACAGGTTTCTTTTCTTCTCTCCTTCAGTTATTCACT
CATTAGGTTGTTCATTCATTCATTCATTCATTCATTCATTCATTCATTCA
TTCATTCATTCATTTTACCTTATCTTTCCATGTATCAGGTTAAAGCGCCG
TGGTGTCGTGAATTTGTAATGTGGCAGGAGAAAGAACATCAAGCCTACAT
ACTACCAAAGTGAGCACTGTGTTTAGCTCTCAAATAAGACGATGCTATCG
TCCGTTTAGAGGGTCAGTAAACGCGGGAAAATATATATGCACGGAGTCAG
GGCGTCATGGCGGTTTACGGGGAAAAAAGTGGCGGTAGAGCTTGGAACAA
ATACTGTAAACACCTCCGCCACTGTTTACTCCTCCGGAAATAAACTCGTT
TTCAAAATTATCTTGCTTCCTGAATTATTCCCTTTTTCAGCGATAATGTG
TAGACGATAGGATCGTCTACTCTCAAATATAATACCACGTTTTCCTTACA
AACCCCTTTTATAAAGTAAACATCTTTACAATTTGGCTGCCATCTACTAT
TGCATCGACTAAAGATCCAATTCGGCTACTCAGTTGATTCAAAACTATTT
TTGCTTTCCATGACTTAACAAGCTACAAGATAGAGGAATTCTCCGATGGG
TGTGAGACTTTGTTTTCTAAGAGGGTTTTAAATAAAAGGTACCCCGTGAT
CTCTGAATGACTTTTTTGTTCTTCCAGTCAAGATTTTGTGGTGTTGGGAG
GAACAGCTCATGCGAGCGAAAATCCTGACGTTCTTCTGGAACACAAACAA
TGGATCAAAAGCACCACTACTAAACTCATGCCTAGTCTTGCGGTAAGAAA
TTGTGTTAAATCAATATCCCTACTAGTAGTATGCAGAAATACGTTTCAAC
TCTGAATAAAGCTAGTGTTCCCATTATCAAAAGTTTCTCACTGGTTAATG
CAAAACCTTAACATATTCGAGGGTTTCATTGAGTGATTTTATTCGAAATT
ACTAAACAGTAAGTTAGTCAGTTAGAACAGACCAGATTCTTTGTTTGCCG
ATATAATTCCGTTACCAGGATGTCTTTCATGTTCTGATAAAAATCTACGT
GTACGTTCACCATAATTTCCATTTCCCTCTAGGACGCTGAGCATGTAGGA
GACTGGGTTGGATTCCGCCCAGCACGTGAAGGAGGCGAAAGATCGGAGAT
TGAGGATTACGATATTGGTGATCACAAAACAGTGAAGGTGAGACATCTGT
GTGTGCTATTGGATTTTACAGAAATTGTTACATATTCTAGGGGTGCTCCT
CGAAAAATCTACAGAATCTGAGGATCAGTAATTGATGGCGGAAATCCACG
GGTTTGCCTTCCAGAAATGATCTCATTAACGTTGGACGGGGTAATTATTT
TTCTGAAAAAGTCCTCTCTACCAGCCACAATGTTCTCTGGTCCCCGGGGG
GGGGGGCACTCAAGGTAAATGACCTACCAGACGTTCGGCCCTTAAGGGTA
GGTTTTTCATAGTTCAGCTAGTGCACTGTAAGGGTAGGAAANNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNAAAAGTGCACTGTAAGGGTATGATTTTTCATGGAA
ATTCACTGCACTGTAAGGGTCCGATTTTAGAAGCCAAATTTTGGGCCGAA
CGTATGGTCGTTTTCAGAGCGAGTGCCCCCCCCGGGCTCTGGTCATATGT
GATCTAAATTTGCAGATAATGTTATAAGGTTAAAACAGCGAGTCTTTTCA
TATTCGCTACGCAGCAATTAATTGATCAATTCTAAACAAAAACTATCAAG
TTAAAGATTGTTCAAGGACGTTAAAAATTATATCAATTCTGAATATTTTC
TTTGAACAGGTTGTTCATAGTTATGGTCACGGTGGATCTGGTTTGACCGT
CTTTTGGGGATGTGCTGAAGACACAATCAACCTCATATACCATTGTCTGC
CAACAGTGAAAATGTCAAAATTGTAATTTCTAAATCTCGTCATACTAACA
GATGACTGAAACTGCTTCCTTCTTTGACATATGAACTATACGTTTTTTAT
AAGAACATCCAAAGTTTTTGATGCCTTCGGATTTTCTTAACTTTTTCAGA
TTTAAGTCTAAAAATGTTCCATGTTTTTACATAGTTTGTTCTTATAAAAA
ACGTGTACTTAAGTTAATGCATTATTTTTATTTTATTGTAATGAAGAATC
TGTAAATATTTTGATAAGTTTTGATTGTATATACTTGATAAAACCACATT
GAATCATGTAGGTTTTTGTCCCTTAATGTTGACCAAGTAGCATATATCAT
CGTGTCCTTCAAGTCAATAAGCATTAACACGCTATATAGGTTTTCATGTT
TCCTTAAGTTTCGTGACTTCCACCATTATGGAAACAGGTTTTCAAATCTG
TAGTGGCGATCACTTCCGCTGATCGAACTTTTGCTTCCATAATGGCGGAT
ATTACGTAACTTGACAAATTAGAAACACATCTAAACATGGGTCCGGCAAA
TGCTTTCCTGATTTTGCTGACTTGAAGTTGTTACTGTTTGTTCCTTTGCT
TTTTCTTCATCAGAATGAAAATTCTCCTTGTTTACATTCTCCTTTTCACC
AGTATTGCAGAAGCTGAAACTTATTGTTTTGTTTAAAACATATGGTATCC
CTTTTTCTTAAAAGACATCAATTGCTTCCATCTCCTCACGCAAACTCGTC
ACGTTTTCAAATTTGAATTTGGGTATATTTATTTTTAGGAGGTATGTAAT
CTTCAATCTCTGTTCTCCTATATAATTGCTTTAGCATCAATTGTCATACT
GGTTCAGTGGTATTGTCTGGTTTAAAGTGGTGGATAATGATTTTCTTTTC
TAATGGTACGTAAACATCATCGCAGTATAACTAATGATGCGTGCTTCACT
GTGCCACTTAATTTCCTTTCACTTTTTATGGAGCGAGATTTGAAGCTTGT
CTTCTTAAAAGTACATTTGCTGTCTTTGGTGGAGCTTTGGTTGTGGTAAC
TGCAATCCGCCTGGCAGACCTCCATGTAGTGGTTCTGACCAATGGCTTCT
TTTTGTTTTTCTGATGTTTGGGTTGATGAGGGTCTCGGTATGTGCTTTGG
AGCTCAATACTCTCTAAAAGAATAGGGTATAAATGACGAATGAATGAAAT
TTTGTTTTTGGCCTTTAGTATTCTTGAAATCTTCAGGTATGACTTATCAC
AGTCAATGAACCATCATAATTGATAACTACCAGACTAAAAGTACCGAAAA
TGCGATATTGTAATCATGCATTTTAAATCCTGAAGAGCCTTACCTTTCAG
GCTGATATCTTCTTCTGTTGTGGCTGTGAAAAGCGGATTATATTTCAAAC
CCAGTTGTCCTTTGTCTAAGGAAGTGAAAAATGAAAATATGGTAAATTAT
ATTCTAGGTTCTACTGAAAGATTTCGTCTCAATGCTGTGATTTTTTTCTA
TTTAGTTTTACTTGACTCTGGTCTGACTACGAGTTTGTTTTGGCGGTTTA
GGTTTAATGGACGTTATAAACTTAGCGATGAGAATATAACTCAAAAGGCT
ATAGGTTCTATTATACTTTCAATTTGCACAATAACCAGAATTTCACGAGG
TTCGATGATGGTGGAGCCATATTCTTTCATATGTTGTTCAATGTGTAACA
GTTTACCAGTACTTGTTGCAAAATCTATCCTCCCTAAAAATAAAAATTAA
CTCATTTTCAATGTGTTACAGTTTACCAGCACTTGTTGCAAAATATATCC
TCCCTAAAAATAAAAATTAACTTGTTTTCAATGTGCAACAGTTTACCAGT
ACTTGTTGCAAAATCTATCCTCCCTCAAAATAAAAATTAACTTGTTTTCA
ATGTGCAACAGTTTACCAGTACTCGTTGCAAAATCTATCCTCCCTCAAAA
TAAAAATTAACTTGTTTTCAATGTGTTACAGTTTACCAGTACTTGTTGCA
AAATCTATCCTCCCTAAAAATAAAAATTAACTCATTTTCAATGTGCAACA
GTTTACCAGTACTTGTTGTAAAATCTATCCTCCCTCAAAATAAAAATTAA
CTTGTTTTCAATGTGTTACAGTTTACCAGTACTTGTTGCAAAATCTATCC
TCCCTAAAAATAAAAATTAACTCATTTTCAATGTGCAACAGTTTACCAGT
ACTTGTTGCAAAATCTATCCTCCCTCAAAATAAAAATTAACTTGTTTTCA
ATGTGTTACAGTTTACCAGTACTTGTTGCAAAATCTATCCTCCCTCAAAA
TAAAAATTAACTCATTTTCAATGTGTTACAGTTTACCAGTACTTGTTGCA
AAATCTATCCTCCCTCAAAATAAAAATTAACTCATTTTCAATGTGTTACA
GTTTACCAGTACTCGTTGCAAAATCTATCCTCCCTCAAAATAAAAATTAA
CTCATTTTCAATGTGTTACAGTTTACCAGTACTCGTTGCAAAATCTATCC
TCCCTCAAAATAAAAATTAACTCATTTTCAATGTGTTACAGTTTACCAGT
ACTTGTTGCAAAATATATCCTCCCTCAAAATAAAAATTAACTCATTTTCA
ATGTGTTACAGTTTACCAGTACTTGTTGCAAAATCTATCCTCCCTCCAAA
ATAAAAATTAACTCATTTTCAATGTGTTACAGTTTACCAGTACTTGTTGC
AAAATCTATCCTCCCTCAAAATAAAAATTAACTCATTTTCAATGTGCAAC
AGTTTACCAGTACTTGTTGCAAAATCTATCCTCCCTCAAAATAAAAATTA
ACTTGTTTTCAATGTGTTACAGTTTACCAGTACTTGTTGCAAAATCTATC
CTCCCTCAAAATAAAAATTAACTCATTTTCAATGTGTTACAGTTTACCAG
TACTCGTTGCAAAATCTATCCTCCCTCAAAATAAAAATTAACTCATTTTC
AATGTGTTACAGTTTACCAGTACTCGTTGCAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030799XLOC_030799Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048418-exon-scaffold_142-1575043694:931332..931686TCONS_00048418-exon-scaffold_142-1575043694:931332..931686Clytia hemisphaericaexon
TCONS_00048418-exon-scaffold_142-1575043694:928681..928801TCONS_00048418-exon-scaffold_142-1575043694:928681..928801Clytia hemisphaericaexon
TCONS_00048418-exon-scaffold_142-1575043694:928289..928368TCONS_00048418-exon-scaffold_142-1575043694:928289..928368Clytia hemisphaericaexon
TCONS_00048418-exon-scaffold_142-1575043694:927758..927823TCONS_00048418-exon-scaffold_142-1575043694:927758..927823Clytia hemisphaericaexon
TCONS_00048418-exon-scaffold_142-1575043694:927476..927530TCONS_00048418-exon-scaffold_142-1575043694:927476..927530Clytia hemisphaericaexon
TCONS_00048418-exon-scaffold_142-1575043694:927220..927321TCONS_00048418-exon-scaffold_142-1575043694:927220..927321Clytia hemisphaericaexon
TCONS_00048418-exon-scaffold_142-1575043694:926578..926648TCONS_00048418-exon-scaffold_142-1575043694:926578..926648Clytia hemisphaericaexon
TCONS_00048418-exon-scaffold_142-1575043694:925945..926059TCONS_00048418-exon-scaffold_142-1575043694:925945..926059Clytia hemisphaericaexon
TCONS_00048418-exon-scaffold_142-1575043694:925550..925654TCONS_00048418-exon-scaffold_142-1575043694:925550..925654Clytia hemisphaericaexon
TCONS_00048418-exon-scaffold_142-1575043694:921202..924277TCONS_00048418-exon-scaffold_142-1575043694:921202..924277Clytia hemisphaericaexon
TCONS_00048418-exon-scaffold_142-1510915933:931332..931686TCONS_00048418-exon-scaffold_142-1510915933:931332..931686Clytia hemisphaericaexon
TCONS_00048418-exon-scaffold_142-1510915933:928681..928801TCONS_00048418-exon-scaffold_142-1510915933:928681..928801Clytia hemisphaericaexon
TCONS_00048418-exon-scaffold_142-1510915933:928289..928368TCONS_00048418-exon-scaffold_142-1510915933:928289..928368Clytia hemisphaericaexon
TCONS_00048418-exon-scaffold_142-1510915933:927758..927823TCONS_00048418-exon-scaffold_142-1510915933:927758..927823Clytia hemisphaericaexon
TCONS_00048418-exon-scaffold_142-1510915933:927476..927530TCONS_00048418-exon-scaffold_142-1510915933:927476..927530Clytia hemisphaericaexon
TCONS_00048418-exon-scaffold_142-1510915933:927220..927321TCONS_00048418-exon-scaffold_142-1510915933:927220..927321Clytia hemisphaericaexon
TCONS_00048418-exon-scaffold_142-1510915933:926578..926648TCONS_00048418-exon-scaffold_142-1510915933:926578..926648Clytia hemisphaericaexon
TCONS_00048418-exon-scaffold_142-1510915933:925945..926059TCONS_00048418-exon-scaffold_142-1510915933:925945..926059Clytia hemisphaericaexon
TCONS_00048418-exon-scaffold_142-1510915933:925550..925654TCONS_00048418-exon-scaffold_142-1510915933:925550..925654Clytia hemisphaericaexon
TCONS_00048418-exon-scaffold_142-1510915933:921202..924277TCONS_00048418-exon-scaffold_142-1510915933:921202..924277Clytia hemisphaericaexon
TCONS_00048418-exon-scaffold_142-1491911889:931332..931686TCONS_00048418-exon-scaffold_142-1491911889:931332..931686Clytia hemisphaericaexon
TCONS_00048418-exon-scaffold_142-1491911889:928681..928801TCONS_00048418-exon-scaffold_142-1491911889:928681..928801Clytia hemisphaericaexon
TCONS_00048418-exon-scaffold_142-1491911889:928289..928368TCONS_00048418-exon-scaffold_142-1491911889:928289..928368Clytia hemisphaericaexon
TCONS_00048418-exon-scaffold_142-1491911889:927758..927823TCONS_00048418-exon-scaffold_142-1491911889:927758..927823Clytia hemisphaericaexon
TCONS_00048418-exon-scaffold_142-1491911889:927476..927530TCONS_00048418-exon-scaffold_142-1491911889:927476..927530Clytia hemisphaericaexon
TCONS_00048418-exon-scaffold_142-1491911889:927220..927321TCONS_00048418-exon-scaffold_142-1491911889:927220..927321Clytia hemisphaericaexon
TCONS_00048418-exon-scaffold_142-1491911889:926578..926648TCONS_00048418-exon-scaffold_142-1491911889:926578..926648Clytia hemisphaericaexon
TCONS_00048418-exon-scaffold_142-1491911889:925945..926059TCONS_00048418-exon-scaffold_142-1491911889:925945..926059Clytia hemisphaericaexon
TCONS_00048418-exon-scaffold_142-1491911889:925550..925654TCONS_00048418-exon-scaffold_142-1491911889:925550..925654Clytia hemisphaericaexon
TCONS_00048418-exon-scaffold_142-1491911889:921202..924277TCONS_00048418-exon-scaffold_142-1491911889:921202..924277Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_142supercontigscaffold_142:921202..931686 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0.0432829	0	0	0	0	0	0	0	0	0	0.289852	0	0	0	0	0	0	0	0	0	0	0
Blast
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BLAST of TCONS_00048418 vs. Swiss-Prot (Human)
Match: OXDD (D-aspartate oxidase OS=Homo sapiens GN=DDO PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.357e-37
Identity = 85/273 (31.14%), Postives = 148/273 (54.21%), Query Frame = 3 
Query:  366 KATYDYVMDLIREQSHSAAIGLSTCHGFRVNTRQEREDI-FWSDIPQNFHILNKEELKRFPPEIKSGVGYTSVFIEAKKLIPYYMKEIEKMGGKFTQKDVKSIKDIGTNYDVIVNCTGLGSRDLVGDKKVYPLRGQIMKVKAPWCREFVMWQEKEHQAYILPNQDFVVLGGTAHASE---NPDVLLEHKQWIKSTTTKLMPSLADAEHVGDWVGFRPAREGGERSEIEDYDIGDHKTVKVVHSYGHGGSGLTVFWGCAEDTINLIYHCLPTVK 1172
            + T++++   I   + +   G+    G+++      E++ FW+D+   F  + + ELK+FP +   G  +T++  E    +P+  K I+  GG    + ++ + ++  ++D++VNC+GLGSR L GD K++P+RGQ+++V+APW   F+  ++     YI P    V LGGT    +   +PD   E+ + I S    L PSL  A ++ + VG RP R  G R + E     D + + VVH YGHG  G++V WG A +   L+  C+  ++
Sbjct:   69 RETFNHLFA-IANSAEAGDAGVHLVSGWQIFQSTPTEEVPFWADVVLGFRKMTEAELKKFP-QYVFGQAFTTLKCECPAYLPWLEKRIKGSGGWTLTRRIEDLWELHPSFDIVVNCSGLGSRQLAGDSKIFPVRGQVLQVQAPWVEHFI--RDGSGLTYIYPGTSHVTLGGTRQKGDWNLSPDA--ENSREILSRCCALEPSLHGACNIREKVGLRPYRP-GVRLQTE-LLARDGQRLPVVHHYGHGSGGISVHWGTALEAARLVSECVHALR 333
The following BLAST results are available for this feature:
BLAST of TCONS_00048418 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
OXDD1.357e-3731.14D-aspartate oxidase OS=Homo sapiens GN=DDO PE=2 SV... [more]
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