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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048420 ID=TCONS_00048420|Name=TCONS_00048420|organism=Clytia hemisphaerica|type=transcript|length=4358bpRun BLAST on NCBI protein sequence of TCONS_00048420-protein >TCONS_00048420-protein ID=TCONS_00048420-protein|Name=TCONS_00048420-protein|organism=Clytia hemisphaerica|type=polypeptide|length=339bp MVVQIAFLGAGIISTSTAFRLLKQRPDFEVTIIAKSFSPNTTSDGAAGFWRun BLAST on NCBI transcript from alignment at scaffold_142:921202..934175- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00048420 ID=TCONS_00048420|Name=TCONS_00048420|organism=Clytia hemisphaerica|type=transcript|length=12974bp|location=Sequence derived from alignment at scaffold_142:921202..934175- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_142:921202..934175- >TCONS_00048420 ID=TCONS_00048420|Name=TCONS_00048420|organism=Clytia hemisphaerica|type=CDS|length=10200bp|location=Sequence derived from alignment at scaffold_142:921202..934175- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00048420 vs. Swiss-Prot (Human)
Match: OXDD (D-aspartate oxidase OS=Homo sapiens GN=DDO PE=2 SV=1) HSP 1 Score: 184.111 bits (466), Expect = 3.396e-50 Identity = 111/337 (32.94%), Postives = 185/337 (54.90%), Query Frame = 2
Query: 389 QIAFLGAGIISTSTAFRLLKQRPDFEVTIIAKSFSPNTTSDGAAGFWGPY-FSGTPEKIVLKNSKATYDYVMDLIREQSHSAAIGLSTCHGFRVNTRQEREDI-FWSDIPQNFHILNKEELKRFPPEIKSGVGYTSVFIEAKKLIPYYMKEIEKMGGKFTQKDVKSIKDIGTNYDVIVNCTGLGSRDLVGDKKVYPLRGQIMKVKAPWCREFVMWQEKEHQAYILPNQDFVVLGGTAHASE---NPDVLLEHKQWIKSTTTKLMPSLADAEHVGDWVGFRPAREGGERSEIEDYDIGDHKTVKVVHSYGHGGSGLTVFWGCAEDTINLIYHCLPTVK 1384
+IA +GAG++ STA + K P VTII+ F+P+TTSD AAG P+ + TP + + T++++ I + + G+ G+++ E++ FW+D+ F + + ELK+FP + G +T++ E +P+ K I+ GG + ++ + ++ ++D++VNC+GLGSR L GD K++P+RGQ+++V+APW F+ ++ YI P V LGGT + +PD E+ + I S L PSL A ++ + VG RP R G R + E D + + VVH YGHG G++V WG A + L+ C+ ++
Sbjct: 5 RIAVVGAGVVGLSTAVCISKLVPRCSVTIISDKFTPDTTSDVAAGMLIPHTYPDTPIHTQKQWFRETFNHLFA-IANSAEAGDAGVHLVSGWQIFQSTPTEEVPFWADVVLGFRKMTEAELKKFPQYV-FGQAFTTLKCECPAYLPWLEKRIKGSGGWTLTRRIEDLWELHPSFDIVVNCSGLGSRQLAGDSKIFPVRGQVLQVQAPWVEHFI--RDGSGLTYIYPGTSHVTLGGTRQKGDWNLSPDA--ENSREILSRCCALEPSLHGACNIREKVGLRPYRP-GVRLQTE-LLARDGQRLPVVHHYGHGSGGISVHWGTALEAARLVSECVHALR 333 The following BLAST results are available for this feature:
BLAST of TCONS_00048420 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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