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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048424 ID=TCONS_00048424|Name=TCONS_00048424|organism=Clytia hemisphaerica|type=transcript|length=3100bpRun BLAST on NCBI protein sequence of TCONS_00048424-protein >TCONS_00048424-protein ID=TCONS_00048424-protein|Name=TCONS_00048424-protein|organism=Clytia hemisphaerica|type=polypeptide|length=679bp MDKLKLRRFVSGEYGICCDKLFDTLVKDPRFNTGLTYNDYENMPLHEYRLRun BLAST on NCBI transcript from alignment at scaffold_142:935260..947654- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00048424 ID=TCONS_00048424|Name=TCONS_00048424|organism=Clytia hemisphaerica|type=transcript|length=12395bp|location=Sequence derived from alignment at scaffold_142:935260..947654- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_142:935260..947654- >TCONS_00048424 ID=TCONS_00048424|Name=TCONS_00048424|organism=Clytia hemisphaerica|type=CDS|length=34680bp|location=Sequence derived from alignment at scaffold_142:935260..947654- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00048424 vs. Swiss-Prot (Human)
Match: ACOX3 (Peroxisomal acyl-coenzyme A oxidase 3 OS=Homo sapiens GN=ACOX3 PE=1 SV=2) HSP 1 Score: 573.933 bits (1478), Expect = 0.000e+0 Identity = 307/679 (45.21%), Postives = 414/679 (60.97%), Query Frame = 2
Query: 68 KLRRFVSGEYGICCDK-LFDTLVKDPRFNTGLTYNDYENMPLHEYRLIQNKRARALAEYQFIEIENVIDNPVSPAAYCDAASFIEWSAAMKYFLNRSLFSMTIYTSTTNPEPLEIAGKADRMEILGAFALTELAHGSNTKGMKTTAHYDPKTQEFILHTPDIEATKCWSGNLGQSATHALVYAQLYTPDGVCHGLHSFLVQVRN-KERLPMPGITVGDMGHKLGLNGMDNGYLKLNKVRIPRTNLMNKQGDVTPEGKYVSPFKTKNARFGAVLGTLSGGRVGITGLATCNLIMAVTIALRYSVCRKQFGPVEGGPEIPVIEYQMQQWRLIPYLAGAYVWHSFAVWFNTRFFEITVRRYTGVQLPPDEAAAE---GREVHGLSCASKPVASWLARDGIQEAREACGGHGYLAVNRIGDLRNTNDPNCTYEGDNNCILMQTSNYLLSIY-KDICKGKKINSPLGSLNFLSNLETIAQSKGNIQSPKNISKQDVE-GALQWLVVYFLKNSNKRLIERNGVDPDEFTARNNSQVFFCRSLAIAFIQNFAMERFGNDKAFSPDCPAEFAEALQNMYMLYGLWIIEKNLGTFYQGGYFSGDKAGHAIKEAILDYCLRLKKDVLPLVDALAPPDWVLNSPIGHSNLKPLENLHDAMVT-PQSQERAPWWRELS--DPVDAGSKSDL 2074
+L F GE + K +F L DP F + ++ L +YR + R + + EY F+ +E++ +P+ A + S A KY L+ +F +Y+S + L K RMEI G FALTEL+HGSNTK ++TTAHYDP T+EFI+H+PD EA K W GN+G++ATHA+V+A+L P CHGLH F+VQ+R+ K LPMPG+ VGD+G KLG NG+DNG+ +KVR+PR +L+N+ GDVTPEG YVSPFK RFGA LG+LS GRV I LA NL +AV IALR+S R+QFGP E EIPV+EY MQQWRL+PYLA Y F+ E+ +G D +A + GRE+H L+ ASKP+ASW + GIQE REACGGHGYLA+NR+G LR+ NDPNCTYEGDNN +L QTSNYLL + + G SPL S++FL I K + S + V A +WLV Y L+ + ++L + +F ARN QV R LA+AF++ ++RF ++ P P L + LY LW + ++ Y+GGYFSG++AG ++ A+L C +LK D + LVD +APPD+VL+SPIG ++ + +NL A++ + ERA WW E S PV KS L
Sbjct: 34 ELALFTEGEGMLRFKKTIFSALENDPLF----ARSPGADLSLEKYRELNFLRCKRIFEYDFLSVEDMFKSPLKVPALIQCLGMYDSSLAAKYLLHSLVFGSAVYSSGSERH-LTYIQKIFRMEIFGCFALTELSHGSNTKAIRTTAHYDPATEEFIIHSPDFEAAKFWVGNMGKTATHAVVFAKLCVPGDQCHGLHPFIVQIRDPKTLLPMPGVMVGDIGKKLGQNGLDNGFAMFHKVRVPRQSLLNRMGDVTPEGTYVSPFKDVRQRFGASLGSLSSGRVSIVSLAILNLKLAVAIALRFSATRRQFGPTE-EEEIPVLEYPMQQWRLLPYLAAVYALDHFSKSLFLDLVELQRGLASG-----DRSARQAELGREIHALASASKPLASWTTQQGIQECREACGGHGYLAMNRLGVLRDDNDPNCTYEGDNNILLQQTSNYLLGLLAHQVHDGACFRSPLKSVDFLDAYPGILDQKFEVSSVADCLDSAVALAAYKWLVCYLLRETYQKLNQEKRSGSSDFEARNKCQVSHGRPLALAFVELTVVQRF-HEHVHQPSVPPSLRAVLGRLSALYALWSLSRHAALLYRGGYFSGEQAGEVLESAVLALCSQLKDDAVALVDVIAPPDFVLDSPIGRADGELYKNLWGAVLQESKVLERASWWPEFSVNKPVIGSLKSKL 700 The following BLAST results are available for this feature:
BLAST of TCONS_00048424 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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