TCONS_00048473 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048473
Unique NameTCONS_00048473
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length671

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048473 ID=TCONS_00048473|Name=TCONS_00048473|organism=Clytia hemisphaerica|type=transcript|length=671bp
GTGAGGAGTAAATTTCATGAAAACGGCAAAAATTCGTGAAAATTGCAAAA
GtctctctttttttaatttaaccGCGCCTATTAAAGAAACGATCAAAGAT
AAAGACTGAGCCTTTATAAAGGACTAAAACGATCATACAAAGAATGGGTA
AACATATAATAACCGCTTCACAAACAAGCAATATTTCACCAAGGTTGTAA
TAAAGTTTGTCTTGAAGCAAATCCGCATTGTTAGTCACTGCCCAAAACat
gttgaaaaatgtcaataatagcaaaactaaaattgacacgatttgaataa
aattcaaattctcCTCCCTAAACGGCTTTTGCACAAAATCATGAAcagca
aaaataaagaaaagcaaACCCACTGGATACAATTTAACGATCGGTGACGA
AATAAATGTTGTCATGACGATCAATAAAAAACGGCGTAAAATCAAAACAG
GTTCCCAGATGAGATGAGATTCTTggtttttcaaattcaatttgaaaGGT
CCGTTTAACACACCCaatatttgatctttttcatcgaGAGTGGCTTGGTC
GAAAACGAAATGGTACTGGGTGAACGCCAGAGGGCGGATGACCATGAAAT
AAAGTGATAGGGGCGGTAAAGTAAGGATGAGAAGAAACTCGTTGGGCGAG
ATACGATATGATCGAAGGGCG
Run BLAST on NCBI

protein sequence of TCONS_00048473-protein

>TCONS_00048473-protein ID=TCONS_00048473-protein|Name=TCONS_00048473-protein|organism=Clytia hemisphaerica|type=polypeptide|length=200bp
ALRSYRISPNEFLLILTLPPLSLYFMVIRPLAFTQYHFVFDQATLDEKDQ
ILGVLNGPFKLNLKNQESHLIWEPVLILRRFLLIVMTTFISSPIVKLYPV
GLLFFIFAVHDFVQKPFREENLNFIQIVSILVLLLLTFFNMFWAVTNNAD
LLQDKLYYNLGEILLVCEAVIICLPILCMIVLVLYKGSVFIFDRFFNRRG
Run BLAST on NCBI

transcript from alignment at scaffold_142:554475..555145

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048473 ID=TCONS_00048473|Name=TCONS_00048473|organism=Clytia hemisphaerica|type=transcript|length=671bp|location=Sequence derived from alignment at scaffold_142:554475..555145 (Clytia hemisphaerica)
CGCCCTTCGATCATATCGTATCTCGCCCAACGAGTTTCTTCTCATCCTTA
CTTTACCGCCCCTATCACTTTATTTCATGGTCATCCGCCCTCTGGCGTTC
ACCCAGTACCATTTCGTTTTCGACCAAGCCACTCtcgatgaaaaagatca
aatattGGGTGTGTTAAACGGACCtttcaaattgaatttgaaaaaccAAG
AATCTCATCTCATCTGGGAACCTGTTTTGATTTTACGCCGTTTTTTATTG
ATCGTCATGACAACATTTATTTCGTCACCGATCGTTAAATTGTATCCAGT
GGGTttgcttttctttatttttgctgTTCATGATTTTGTGCAAAAGCCGT
TTAGGGAGgagaatttgaattttattcaaatcgtgtcaattttagttttg
ctattattgacatttttcaacatGTTTTGGGCAGTGACTAACAATGCGGA
TTTGCTTCAAGACAAACTTTATTACAACCTTGGTGAAATATTGCTTGTTT
GTGAAGCGGTTATTATATGTTTACCCATTCTTTGTATGATCGTTTTAGTC
CTTTATAAAGGCTCAGTCTTTATCTTTGATCGTTTCTTTAATAGGCGCgg
ttaaattaaaaaaagagagaCTTTTGCAATTTTCACGAATTTTTGCCGTT
TTCATGAAATTTACTCCTCAC

Coding sequence (CDS) from alignment at scaffold_142:554475..555145

>TCONS_00048473 ID=TCONS_00048473|Name=TCONS_00048473|organism=Clytia hemisphaerica|type=CDS|length=603bp|location=Sequence derived from alignment at scaffold_142:554475..555145 (Clytia hemisphaerica)
GCCCTTCGATCATATCGTATCTCGCCCAACGAGTTTCTTCTCATCCTTAC
TTTACCGCCCCTATCACTTTATTTCATGGTCATCCGCCCTCTGGCGTTCA
CCCAGTACCATTTCGTTTTCGACCAAGCCACTCtcgatgaaaaagatcaa
atattGGGTGTGTTAAACGGACCtttcaaattgaatttgaaaaaccAAGA
ATCTCATCTCATCTGGGAACCTGTTTTGATTTTACGCCGTTTTTTATTGA
TCGTCATGACAACATTTATTTCGTCACCGATCGTTAAATTGTATCCAGTG
GGTttgcttttctttatttttgctgTTCATGATTTTGTGCAAAAGCCGTT
TAGGGAGgagaatttgaattttattcaaatcgtgtcaattttagttttgc
tattattgacatttttcaacatGTTTTGGGCAGTGACTAACAATGCGGAT
TTGCTTCAAGACAAACTTTATTACAACCTTGGTGAAATATTGCTTGTTTG
TGAAGCGGTTATTATATGTTTACCCATTCTTTGTATGATCGTTTTAGTCC
TTTATAAAGGCTCAGTCTTTATCTTTGATCGTTTCTTTAATAGGCGCggt
taa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030827XLOC_030827Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048473-proteinTCONS_00048473-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048473-exon-scaffold_142-1491911889:554475..555145TCONS_00048473-exon-scaffold_142-1491911889:554475..555145Clytia hemisphaericaexon
TCONS_00048473-exon-scaffold_142-1510915933:554475..555145TCONS_00048473-exon-scaffold_142-1510915933:554475..555145Clytia hemisphaericaexon
TCONS_00048473-exon-scaffold_142-1575043694:554475..555145TCONS_00048473-exon-scaffold_142-1575043694:554475..555145Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_142supercontigscaffold_142:554475..555145 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.517292	0.655801	0.81645	0.818524	0.347421	0.723002	0.376667	0.142623	0.497545	0.652815	1.16227	0.267733	3.49278	2.14373	3.36826	3.69934	1.92282	1.6643	7.7803	5.4906	2.83956	2.7842	2.89517	3.62624	0.783429	1.49993	0.142103	0	4.18853	2.66392
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048473 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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