TCONS_00048474 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048474
Unique NameTCONS_00048474
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length582

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048474 ID=TCONS_00048474|Name=TCONS_00048474|organism=Clytia hemisphaerica|type=transcript|length=582bp
CCGACTCGATTGTTGTATTTAGAATTTGAAGACTGGACTTGGAATCTTGT
GTATAATGTATATTGGTTTTGAGGGCGCCAATACGGCCCAGTGGAGCTGA
ATTATTTTTGAACGTACAGTTTACAATTTTGTATGTAATATAGTGTGAAT
TGTACGCCATTAAAGCGGCCGCGCGGTATGCTTGCGTGTATTGTTCTTCG
ATGTAACAGTCCCTGAACTCGGAATTTCGGATCGTCAACGACATTGCCTT
GATGAGTGCTGCTCCAAACAAGGCACTTTTAAATATACAATTGTCTATGG
TGACACTTTTAGCTTCGGTTATGTCTAGCATAAAATGACTCATATCGATA
TCAACTTGCTTTGAGTAAGATCCTTGGAAGTGACAATTCTCCAAGTGAAT
ATTCGAATCTGTCAAGTGCCATTCGGGTACTCCTTGGATAATTAAAGCTG
AATGTTGAAATCGATTTCGAATGAATTTGAACTTGCCTTTAGAGAAGTAC
ATTGTAAAAACTGTATCCTTGAAGTTTGTGTCAATGATTCTCATCGTGGC
GAGTTGGTAAAAGTTTAAAGTGTAATTGATAA
Run BLAST on NCBI

protein sequence of TCONS_00048474-protein

>TCONS_00048474-protein ID=TCONS_00048474-protein|Name=TCONS_00048474-protein|organism=Clytia hemisphaerica|type=polypeptide|length=193bp
INYTLNFYQLATMRIIDTNFKDTVFTMYFSKGKFKFIRNRFQHSALIIQG
VPEWHLTDSNIHLENCHFQGSYSKQVDIDMSHFMLDITEAKSVTIDNCIF
KSALFGAALIKAMSLTIRNSEFRDCYIEEQYTQAYRAAALMAYNSHYITY
KIVNCTFKNNSAPLGRIGALKTNIHYTQDSKSSLQILNTTIES
Run BLAST on NCBI

transcript from alignment at scaffold_142:558654..559235

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048474 ID=TCONS_00048474|Name=TCONS_00048474|organism=Clytia hemisphaerica|type=transcript|length=582bp|location=Sequence derived from alignment at scaffold_142:558654..559235 (Clytia hemisphaerica)
TTATCAATTACACTTTAAACTTTTACCAACTCGCCACGATGAGAATCATT
GACACAAACTTCAAGGATACAGTTTTTACAATGTACTTCTCTAAAGGCAA
GTTCAAATTCATTCGAAATCGATTTCAACATTCAGCTTTAATTATCCAAG
GAGTACCCGAATGGCACTTGACAGATTCGAATATTCACTTGGAGAATTGT
CACTTCCAAGGATCTTACTCAAAGCAAGTTGATATCGATATGAGTCATTT
TATGCTAGACATAACCGAAGCTAAAAGTGTCACCATAGACAATTGTATAT
TTAAAAGTGCCTTGTTTGGAGCAGCACTCATCAAGGCAATGTCGTTGACG
ATCCGAAATTCCGAGTTCAGGGACTGTTACATCGAAGAACAATACACGCA
AGCATACCGCGCGGCCGCTTTAATGGCGTACAATTCACACTATATTACAT
ACAAAATTGTAAACTGTACGTTCAAAAATAATTCAGCTCCACTGGGCCGT
ATTGGCGCCCTCAAAACCAATATACATTATACACAAGATTCCAAGTCCAG
TCTTCAAATTCTAAATACAACAATCGAGTCGG

Coding sequence (CDS) from alignment at scaffold_142:558654..559235

>TCONS_00048474 ID=TCONS_00048474|Name=TCONS_00048474|organism=Clytia hemisphaerica|type=CDS|length=579bp|location=Sequence derived from alignment at scaffold_142:558654..559235 (Clytia hemisphaerica)
ATCAATTACACTTTAAACTTTTACCAACTCGCCACGATGAGAATCATTGA
CACAAACTTCAAGGATACAGTTTTTACAATGTACTTCTCTAAAGGCAAGT
TCAAATTCATTCGAAATCGATTTCAACATTCAGCTTTAATTATCCAAGGA
GTACCCGAATGGCACTTGACAGATTCGAATATTCACTTGGAGAATTGTCA
CTTCCAAGGATCTTACTCAAAGCAAGTTGATATCGATATGAGTCATTTTA
TGCTAGACATAACCGAAGCTAAAAGTGTCACCATAGACAATTGTATATTT
AAAAGTGCCTTGTTTGGAGCAGCACTCATCAAGGCAATGTCGTTGACGAT
CCGAAATTCCGAGTTCAGGGACTGTTACATCGAAGAACAATACACGCAAG
CATACCGCGCGGCCGCTTTAATGGCGTACAATTCACACTATATTACATAC
AAAATTGTAAACTGTACGTTCAAAAATAATTCAGCTCCACTGGGCCGTAT
TGGCGCCCTCAAAACCAATATACATTATACACAAGATTCCAAGTCCAGTC
TTCAAATTCTAAATACAACAATCGAGTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030828XLOC_030828Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048474-proteinTCONS_00048474-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048474-exon-scaffold_142-1491911889:558654..559235TCONS_00048474-exon-scaffold_142-1491911889:558654..559235Clytia hemisphaericaexon
TCONS_00048474-exon-scaffold_142-1510915933:558654..559235TCONS_00048474-exon-scaffold_142-1510915933:558654..559235Clytia hemisphaericaexon
TCONS_00048474-exon-scaffold_142-1575043694:558654..559235TCONS_00048474-exon-scaffold_142-1575043694:558654..559235Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_142supercontigscaffold_142:558654..559235 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.380458	0.278255	0.646162	0.421446	0	0	0.489139	0.572408	0	0	0.385455	0.190037	0.506062	0.131388	0	0.0579602	0.357011	0.365925	0.404436	0.529016	0.0919622	0	0	0.0991482	0	0	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR012334Pectin_lyas_fold
IPR011050Pectin_lyase_fold/virulence
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048474 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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