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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048475 ID=TCONS_00048475|Name=TCONS_00048475|organism=Clytia hemisphaerica|type=transcript|length=974bp
GCAGATTCTAACTGTGTTTTTCGTTACCGACTTGTCAAGAGAATTCGACC
TAAAAAAATCGCATAAAGAAAGTCAAATACTGGAGAAAGAAAGACTTTTA
GAAACACAATCactaaatgaaaaagaaaagattgatcTAGATTTAGGGAA
TTCAGGATTCGATTCCAAGGAGGAACTAACCCTAATTGAGGATACTTCTG
ATGGTCAGCCCTGTCAACCGACACTAGATCTGGATAATGAGAATCATGAT
GATGTATCTGCACCAATGTTACCAAGGGAACCAGACAAGAGTATCCGAAA
TTCATTATGGACATTATTTACAAGCATAGATGTTGTgctcatttttatat
tttcattttttgttttctttgaattGATAACTTATGATTCTTGGATTCCA
ATGTTATGTACAGAAATTTTACATTGGGGAATTGTAGAGATTAACTTAAT
CTTTCTTGGTAATAGTATTGCTGTTGGTATCATTTATCTTGCGTGTTATT
TCAGACCACCAGCAAAAGAACAGTTCTATACTCTGGCTGTATATTCGTTT
GTAGCTGGTGTTTGTCTGTATGCAATCTTTTTGTATTTCTCCCTTGGTAT
CAAAGTTACTTGGTTAAATATCTTGTTTTGGTTTctttacattttgtttt
ttgCTGTTATGATTGTACTGGAGAGATTGTTCCTGGTGAACACTTTAATA
CAAATGGTACCGTCCGAAATTCAAGCTTTTACTGAAGGTATCCGTTCATC
GTTTTCTCGGACAGGAGCCGCTGTAGGGCTGTTTACTGCAGCTTTTTCTT
TTGGGATTTTGTCTTATGTTTGTGCTGTTTGTATGCTGGTAACTATGGTT
TTGTTGGCACTTCTAATATGGAGAAAGAAACATTTTCAGAATCctaaaat
tattaatttttataaaatagtgtAATTATCAACGTAGTTTTCTTTTCGTA
AAAAGGAACAATCAAActtctttg Run BLAST on NCBI protein sequence of TCONS_00048475-protein >TCONS_00048475-protein ID=TCONS_00048475-protein|Name=TCONS_00048475-protein|organism=Clytia hemisphaerica|type=polypeptide|length=307bp
QILTVFFVTDLSREFDLKKSHKESQILEKERLLETQSLNEKEKIDLDLGN
SGFDSKEELTLIEDTSDGQPCQPTLDLDNENHDDVSAPMLPREPDKSIRN
SLWTLFTSIDVVLIFIFSFFVFFELITYDSWIPMLCTEILHWGIVEINLI
FLGNSIAVGIIYLACYFRPPAKEQFYTLAVYSFVAGVCLYAIFLYFSLGI
KVTWLNILFWFLYILFFAVMIVLERLFLVNTLIQMVPSEIQAFTEGIRSS
FSRTGAAVGLFTAAFSFGILSYVCAVCMLVTMVLLALLIWRKKHFQNPKI
INFYKIV Run BLAST on NCBI transcript from alignment at scaffold_142:592334..593307 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048475 ID=TCONS_00048475|Name=TCONS_00048475|organism=Clytia hemisphaerica|type=transcript|length=974bp|location=Sequence derived from alignment at scaffold_142:592334..593307 (Clytia hemisphaerica)
caaagaagTTTGATTGTTCCTTTTTACGAAAAGAAAACTACGTTGATAAT
TacactattttataaaaattaataattttagGATTCTGAAAATGTTTCTT
TCTCCATATTAGAAGTGCCAACAAAACCATAGTTACCAGCATACAAACAG
CACAAACATAAGACAAAATCCCAAAAGAAAAAGCTGCAGTAAACAGCCCT
ACAGCGGCTCCTGTCCGAGAAAACGATGAACGGATACCTTCAGTAAAAGC
TTGAATTTCGGACGGTACCATTTGTATTAAAGTGTTCACCAGGAACAATC
TCTCCAGTACAATCATAACAGcaaaaaacaaaatgtaaagAAACCAAAAC
AAGATATTTAACCAAGTAACTTTGATACCAAGGGAGAAATACAAAAAGAT
TGCATACAGACAAACACCAGCTACAAACGAATATACAGCCAGAGTATAGA
ACTGTTCTTTTGCTGGTGGTCTGAAATAACACGCAAGATAAATGATACCA
ACAGCAATACTATTACCAAGAAAGATTAAGTTAATCTCTACAATTCCCCA
ATGTAAAATTTCTGTACATAACATTGGAATCCAAGAATCATAAGTTATCa
attcaaagaaaacaaaaaatgaaaatataaaaatgagcACAACATCTATG
CTTGTAAATAATGTCCATAATGAATTTCGGATACTCTTGTCTGGTTCCCT
TGGTAACATTGGTGCAGATACATCATCATGATTCTCATTATCCAGATCTA
GTGTCGGTTGACAGGGCTGACCATCAGAAGTATCCTCAATTAGGGTTAGT
TCCTCCTTGGAATCGAATCCTGAATTCCCTAAATCTAgatcaatcttttc
tttttcatttagtGATTGTGTTTCTAAAAGTCTTTCTTTCTCCAGTATTT
GACTTTCTTTATGCGATTTTTTTAGGTCGAATTCTCTTGACAAGTCGGTA
ACGAAAAACACAGTTAGAATCTGC Coding sequence (CDS) from alignment at scaffold_142:592334..593307 >TCONS_00048475 ID=TCONS_00048475|Name=TCONS_00048475|organism=Clytia hemisphaerica|type=CDS|length=924bp|location=Sequence derived from alignment at scaffold_142:592334..593307 (Clytia hemisphaerica)
TTacactattttataaaaattaataattttagGATTCTGAAAATGTTTCT
TTCTCCATATTAGAAGTGCCAACAAAACCATAGTTACCAGCATACAAACA
GCACAAACATAAGACAAAATCCCAAAAGAAAAAGCTGCAGTAAACAGCCC
TACAGCGGCTCCTGTCCGAGAAAACGATGAACGGATACCTTCAGTAAAAG
CTTGAATTTCGGACGGTACCATTTGTATTAAAGTGTTCACCAGGAACAAT
CTCTCCAGTACAATCATAACAGcaaaaaacaaaatgtaaagAAACCAAAA
CAAGATATTTAACCAAGTAACTTTGATACCAAGGGAGAAATACAAAAAGA
TTGCATACAGACAAACACCAGCTACAAACGAATATACAGCCAGAGTATAG
AACTGTTCTTTTGCTGGTGGTCTGAAATAACACGCAAGATAAATGATACC
AACAGCAATACTATTACCAAGAAAGATTAAGTTAATCTCTACAATTCCCC
AATGTAAAATTTCTGTACATAACATTGGAATCCAAGAATCATAAGTTATC
aattcaaagaaaacaaaaaatgaaaatataaaaatgagcACAACATCTAT
GCTTGTAAATAATGTCCATAATGAATTTCGGATACTCTTGTCTGGTTCCC
TTGGTAACATTGGTGCAGATACATCATCATGATTCTCATTATCCAGATCT
AGTGTCGGTTGACAGGGCTGACCATCAGAAGTATCCTCAATTAGGGTTAG
TTCCTCCTTGGAATCGAATCCTGAATTCCCTAAATCTAgatcaatctttt
ctttttcatttagtGATTGTGTTTCTAAAAGTCTTTCTTTCTCCAGTATT
TGACTTTCTTTATGCGATTTTTTTAGGTCGAATTCTCTTGACAAGTCGGT
AACGAAAAACACAGTTAGAATCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048475-exon-scaffold_142-1491911889:592334..593307 | TCONS_00048475-exon-scaffold_142-1491911889:592334..593307 | Clytia hemisphaerica | exon |
| TCONS_00048475-exon-scaffold_142-1510915933:592334..593307 | TCONS_00048475-exon-scaffold_142-1510915933:592334..593307 | Clytia hemisphaerica | exon |
| TCONS_00048475-exon-scaffold_142-1575043694:592334..593307 | TCONS_00048475-exon-scaffold_142-1575043694:592334..593307 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_142 | supercontig | scaffold_142:592334..593307 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR020846 | MFS_dom |
Blast
The following BLAST results are available for this feature:
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