TCONS_00048476 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048476
Unique NameTCONS_00048476
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length465

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048476 ID=TCONS_00048476|Name=TCONS_00048476|organism=Clytia hemisphaerica|type=transcript|length=465bp
TATGAAggaaaaaatactcacaaaatggtgaaaataagaacatgttaaga
acattttgaggcttaaaatccaaaaagttaagaacattcgaaggcttcaa
atattttggatgttcctataaaaaaacgtgtatatttcGGGACACCCATA
TGTTATGATTTGAAATGCAGCTTCAATTACGTAATATGTTCAATTTTCTT
GTAAGTTTTGAAATCAAATGAGGAAGTAAGAATTTGACACCCTCTGAAAA
CAAGGCAACCCCACCGTCTAATATCGAGTAAAAATTTATACCataacaca
aaaaaaacaaatcaaggGCCATCAAGAGCTATCTATTTTGGCGGAATGTC
GACATTGCTTAGTAAGCGCTTTTCAAAATTcgagatttatttattttctt
gatACAAGTTATTAAAACTtcctccaaaagatttttttaatgaagaaaAC
TATTTTCACCAGTGT
Run BLAST on NCBI

transcript from alignment at scaffold_142:680060..680524

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048476 ID=TCONS_00048476|Name=TCONS_00048476|organism=Clytia hemisphaerica|type=transcript|length=465bp|location=Sequence derived from alignment at scaffold_142:680060..680524 (Clytia hemisphaerica)
ACACTGGTGAAAATAGTtttcttcattaaaaaaatcttttggaggaAGTT
TTAATAACTTGTatcaagaaaataaataaatctcgAATTTTGAAAAGCGC
TTACTAAGCAATGTCGACATTCCGCCAAAATAGATAGCTCTTGATGGCcc
ttgatttgttttttttgtgttatGGTATAAATTTTTACTCGATATTAGAC
GGTGGGGTTGCCTTGTTTTCAGAGGGTGTCAAATTCTTACTTCCTCATTT
GATTTCAAAACTTACAAGAAAATTGAACATATTACGTAATTGAAGCTGCA
TTTCAAATCATAACATATGGGTGTCCCgaaatatacacgtttttttatag
gaacatccaaaatatttgaagccttcgaatgttcttaactttttggattt
taagcctcaaaatgttcttaacatgttcttattttcaccattttgtgagt
attttttccTTCATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030830XLOC_030830Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048476-exon-scaffold_142-1491911889:680060..680524TCONS_00048476-exon-scaffold_142-1491911889:680060..680524Clytia hemisphaericaexon
TCONS_00048476-exon-scaffold_142-1510915933:680060..680524TCONS_00048476-exon-scaffold_142-1510915933:680060..680524Clytia hemisphaericaexon
TCONS_00048476-exon-scaffold_142-1575043694:680060..680524TCONS_00048476-exon-scaffold_142-1575043694:680060..680524Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_142supercontigscaffold_142:680060..680524 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.16354	0.353696	0	0	0.379877	0.693005	0.118107	0	0	0.370158	0.0940224	0.0966348	0.417237	0.0860187	0	0.109955	0.148814	0.157564	0.417765	0	0	0	0	0	6.04403	4.15964	0.160819	0.646767
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048476 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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