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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048493 ID=TCONS_00048493|Name=TCONS_00048493|organism=Clytia hemisphaerica|type=transcript|length=1138bp
acaGTTTTATAGAATCTTAAGAAATGACGTTTAagtattttcaatgaaaa
cttattaaggataaaaaatttacaattttttcataattGTTTGGATTAAA
TTAATAAGCCAGCAAAATTATTGCAACATCAATCATCGTCAACATTTTGT
ATAAACATCTACCGAAATAAGCATCCCAGTTAAATTGATATAAACTTTTC
TCGCAAACATTTTATTTCTTAGTACCAACTGATGTAAAGCCAAGTATTGG
ATTAACCTCAATTCCAGGATATATCAAAAACAACATAACCACTTAATTGA
TATCAACTTTCTctctcaaaaattttgaaatttcagtaaTCTGTGATATA
AAGCCAATAAGCATTCCATCAGTTCCAGTACATATCAAGAACCACAAAAC
CACTTTACCAAATAAAGAATCTCCACAAATCcttcaatttcttttatttt
tggcaTGATAAACAAGTCCCTTCATATTAGAAGGATCATCATCTGGTACC
GGAGGAGAATATTGCATTTTACGGGCACCATAACCCCCTGGTGACATCCT
AACGCTGGCAGGTGGTGGAGACCTCCGGCCACTAATAGGTGACCTCCTTC
CAGTAACAGGAGACAGTCTTCCTCCATTAGAGGGTGAGATTCTACCATTT
ACAGGTGGTGACCTTCTACCACTAACTGGGGATAACCTTCCAGTTGGGGA
GCGTCTACTCTGTgttggttctttgtttttaccATCGAGAAAATGTGCAA
CAAGTCCATATAATATCGGTAGTTGTTTTGATTTACGACTTTCATTAATA
TTCAGTTCAGCAGCTAAGAATTCACGGTCAATAGGGTCTTTCGGTTGACC
CGACTCAGCCATCAAAACTGTACTTGTATATTTGTATTGGTTAAACTCTA
AATAATCTCTTATCAGTTCATTTATAAACatgttttcatttgaaagaACA
GGTTTGGGCTCAGTTTGATCATCCAAAGCACTAAACACTTCAGCTCTGAT
CCGTGCTCGTATTTGGTTTAATGCACCTCTGTTATCCAAAGTCTCTTTTA
ACACATTCTTGAGATCATCTATTGATGCCATGGCCACTGTCGTtaagatt
ttctattttttttcatagtaCCTTTCTACATTTTCTAA Run BLAST on NCBI transcript from alignment at scaffold_143:56725..57978+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048493 ID=TCONS_00048493|Name=TCONS_00048493|organism=Clytia hemisphaerica|type=transcript|length=1254bp|location=Sequence derived from alignment at scaffold_143:56725..57978+ (Clytia hemisphaerica)
acaGTTTTATAGAATCTTAAGAAATGACGTTTAagtattttcaatgaaaa
cttattaaggataaaaaatttacaattttttcataattGTTTGGATTAAA
TTAATAAGCCAGCAAAATTATTGCAACATCAATCATCGTCAACATTTTGT
ATAAACATCTACCGAAATAAGCATCCCAGTTAAATTGATATAAACTTTTC
TCGCAAACATTTTATTTCTTAGTACCAACTGATGTAAAGCCAAGTATTGG
ATTAACCTCAATTCCAGGATATATCAAAAACAACATAACCACTTAATTGA
TATCAACTTTCTctcgcaaaaattttgaaatttcagtacCCTGTGTTGTG
ATATAAAGCCAATAAACATTCCATCAATTCCAGTACATATCAAAAACAAC
ATAACCACTTAATTGATATCAACTTTCTctctcaaaaattttgaaatttc
agtaaTCTGTGATATAAAGCCAATAAGCATTCCATCAGTTCCAGTACATA
TCAAGAACCACAAAACCACTTTACCAAATAAAGAATCTCCACAAATCctt
caatttcttttatttttggcaTGATAAACAAGTCCCTTCATATTAGAAGG
ATCATCATCTGGTACCGGAGGAGAATATTGCATTTTACGGGCACCATAAC
CCCCTGGTGACATCCTAACGCTGGCAGGTGGTGGAGACCTCCGGCCACTA
ATAGGTGACCTCCTTCCAGTAACAGGAGACAGTCTTCCTCCATTAGAGGG
TGAGATTCTACCATTTACAGGTGGTGACCTTCTACCACTAACTGGGGATA
ACCTTCCAGTTGGGGAGCGTCTACTCTGTgttggttctttgtttttaccA
TCGAGAAAATGTGCAACAAGTCCATATAATATCGGTAGTTGTTTTGATTT
ACGACTTTCATTAATATTCAGTTCAGCAGCTAAGAATTCACGGTCAATAG
GGTCTTTCGGTTGACCCGACTCAGCCATCAAAACTGTACTTGTATATTTG
TATTGGTTAAACTCTAAATAATCTCTTATCAGTTCATTTATAAACatgtt
ttcatttgaaagaACAGGTTTGGGCTCAGTTTGATCATCCAAAGCACTAA
ACACTTCAGCTCTGATCCGTGCTCGTATTTGGTTTAATGCACCTCTGTTA
TCCAAAGTCTCTTTTAACACATTCTTGAGATCATCTATTGATGCCATGGC
CACTGTCGTtaagattttctattttttttcatagtaCCTTTCTACATTTT
CTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048493-exon-scaffold_143-1491911889:56725..56994 | TCONS_00048493-exon-scaffold_143-1491911889:56725..56994 | Clytia hemisphaerica | exon |
| TCONS_00048493-exon-scaffold_143-1510915933:56725..56994 | TCONS_00048493-exon-scaffold_143-1510915933:56725..56994 | Clytia hemisphaerica | exon |
| TCONS_00048493-exon-scaffold_143-1575043694:56725..56994 | TCONS_00048493-exon-scaffold_143-1575043694:56725..56994 | Clytia hemisphaerica | exon |
| TCONS_00048493-exon-scaffold_143-1491911889:57111..57978 | TCONS_00048493-exon-scaffold_143-1491911889:57111..57978 | Clytia hemisphaerica | exon |
| TCONS_00048493-exon-scaffold_143-1510915933:57111..57978 | TCONS_00048493-exon-scaffold_143-1510915933:57111..57978 | Clytia hemisphaerica | exon |
| TCONS_00048493-exon-scaffold_143-1575043694:57111..57978 | TCONS_00048493-exon-scaffold_143-1575043694:57111..57978 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_143 | supercontig | scaffold_143:56725..57978 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005815 | microtubule organizing center |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0034453 | microtubule anchoring |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0034453 |
microtubule anchoring |
| cellular_component |
GO:0005815 |
microtubule organizing center |
| molecular_function |
GO:0005515 |
protein binding |
Blast
BLAST of TCONS_00048493 vs. Swiss-Prot (Human)
Match: FOPNL (LisH domain-containing protein FOPNL OS=Homo sapiens GN=FOPNL PE=1 SV=1) HSP 1 Score: 157.532 bits (397), Expect = 1.267e-45 Identity = 72/117 (61.54%), Postives = 95/117 (81.20%), Query Frame = -1
Query: 731 MASIDDLKNVLKETLDNRGALNQIRARIRAEVFSALDDQTEPKPVLSNENMFINELIRDYLEFNQYKYTSTVLMAESGQPKDPIDREFLAAELNINESRKSKQLPILYGLVAHFLDG 1081
MA++ +LK VLK+TL+ +G L ++ARIRAEVF+ALDD EP+P LS+EN+ INELIR+YLEFN+YKYT++VL+AESGQP P+DR+FL ELN E K +P+LYG++AHFL G
Sbjct: 1 MATVAELKAVLKDTLEKKGVLGHLKARIRAEVFNALDDDREPRPSLSHENLLINELIREYLEFNKYKYTASVLIAESGQPVVPLDRQFLIHELNAFEESKDNTIPLLYGILAHFLRG 117
The following BLAST results are available for this feature:
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