TCONS_00048505 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048505
Unique NameTCONS_00048505
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length697

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048505 ID=TCONS_00048505|Name=TCONS_00048505|organism=Clytia hemisphaerica|type=transcript|length=697bp
ACAATCGGAAGGTCTCGACCACTGAAAATTTGCACCACCAAGAGAGCAAC
AAAGACAAAGACACAACCATGCCTTCATCAATGGAAGAAATTCGAGATCC
ATTTTTCTGGAAAGCCGTATTCGCCGAGTTTTTCGCAACTGCACTTTTCG
TTATGAATGTTACGACCGTCGCAACATTGTCAGCCGGATTCCAAACCGAG
AAAATTATCGTTATTTCCCTCGCTATCGCTATCGTTGGTTCAGCTATCAC
ATACGGGCTCATCCCTGAAGAGCAGCATGGTGCATTGGGTGCCCTCCAAC
CTTCACCAGGTGTCACTCAAGCACAGGCGTTCTTCGTTGAGATGTTACTG
ACTGTTTTGTTGTGTTTGACCGTCTTCTCTTCCACCTCAACTGATCATGG
ACGAAAAGATTTTGGATTCTCAAATGCATTTGCTATTGGAATGTCAGTGA
CTGTCTCTCATTTGCTTGGGGTACCAATGACAGGATCAGGCATCAATCCA
GCACGTGCTCTTGGACCTTCGGTTGTCACTGCTACTTTCCATGAATCGCA
CTGGCTGTATTGGATTGGACCGCTAGTTGGAGGTGTTTTCTCCGGCCTTT
TCTACAGATTCGTGTTATCTGTCGAACCACCAAGTCAAGAAACCAAAGAC
ATCAACCTCAAAACTGTTTCTGCCGCATAAGGAGCCATATAGGATGT
Run BLAST on NCBI

transcript from alignment at scaffold_143:337912..347482+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048505 ID=TCONS_00048505|Name=TCONS_00048505|organism=Clytia hemisphaerica|type=transcript|length=9571bp|location=Sequence derived from alignment at scaffold_143:337912..347482+ (Clytia hemisphaerica)
ACAATCGGAAGGTCTCGACCACTGAAAATTTGTaagttttattttcactt
ttttttaactATAAGCTTTCTTTCATACAATAGATGGCCCAGGAAAAGAA
CTCAATCAGTGATATATCAACTTTGGCTATACGcgttttttataacaaca
aactACTGTATgtaaagaacataaggcttcgatggccaaattattaagaa
catgtaagaacattttaaggctttgtagaccgaacactcaatttcttagg
aaaatggacaaaaatgctcacaaaatggtgataCTATGCTGATATGagcg
aaaaaatgtttttcttttcctctttctgaccaatcttgctccacatacgt
gtcaatctaatgtgaaaaagcttgtgaattaaaattgatgagtaagcaaa
cgatatcactcttatttgaaaacaaaacatttgTAATTGAACAGTAAAGT
TGCTTGTAATTTTACTATGTAATTACTCAGTCAGTGACTTTTAAACATGA
CGAAGCATCATCCGCAAAtgtaattttctcaaattttaattttctcaaAC
GTTACCCGAGTAACAAGATATTTTGATGTCTCTAACCTGTCTATACATTG
GAAAAAAATGCGGTCTTCGTCATGAAATTTTAATGGAAAGCTttgtaaat
tttaaattaaacTCTAGAACAACCAAAAGAAATTATCACAATAAGACTAA
GTAAAGTCAAGGATAAAGTCATTTCTCGTAGGCTTCAAGCTGgttttttt
ctttcgaaaattgatttttgacaatcagaaaattttttattcgtACTATT
TTTTacagttttaaaaatattttcttcaagttACTCTTCTACGAAATTGG
ATGCTGAATCTGCTAAGACTTAAAATGAAGAGGATTGAAGAAACTTGAAA
AGTTGAATATCGAAATACAGACATGCTTGttagaaaacagaaaatatctT
CTGTTAGAGTACTGTAAGTAATAGTTCTTAGTGCTTTAATACTGGATGGT
CCAGTTGCAAGGGGGTGTGCTCGGTTTAAAACAACCTTGAGTGTGTTCAA
AAATTAGTCTCAAGATTGAACACTTACAGTATACAAAGAATTTTTCGTAG
AGTTAgtgcaaatttgggctaaaGATCCTCCACTGTGCTTGACCTccttg
aaaaatagaaaaatagggGATTGAAATGGAGGGAGATTAACTCAGATTTC
AGATTTAGTTTTGAAAATGTCATTCGGTTATTCCAGAGGAATAGTTATTC
CACAACTCCTGCATCTATAGGGGCGGTTCAATCTCCAATCGTGGAAGACA
TTTTCTCGGTATGGCCCCATTTATTCCGTTATCggcttgataaaaaaaaa
ttagtactATATGACtttatttgtcaatttttcgaGATTGTTCTGAAATA
ATCTGCAGGTTTTGGTTGGGTCGATAGTTTTCCCGACAATTTGTGTTGTT
AATTCACGCAATGCACGATCAAGTGAAttcagggtcggatacaggaggta
ggctatattattcatggagagtaattagtttccatataaggtaatacgat
aataaagtgcactctgctccattggttatagcctNttccatataaggtaa
tacgataataaagtgcactctcctccattggttatagcctccctctgtat
ccgagcctggaATTCGTTTCTAAAAGATGCATTGTAAGAATGCATGACAA
AGCAATGAAACAAATCAAGGGCGTAATTgttcgaaaaattttcaaaaaca
ataaatcAAAAGTCAGCAGCAAAATATAttcgctttttataagaatctgt
AATGTTGACAAGACTATTCTGAGACTTTTCTTAGAGTAGCGTAAGTTATT
TTAGGTTTTCATTAATTTAGCCCTTAACTCGCTCAAAATTTAACCTCAga
cattttcaagcaattttgaACCTCGATgtattcttattttaaaaaattgt
cCTTATGAAGAATGTAATGTGATCAATCGAAAAACGCCACAAGAAGGCTG
CGAGTTTATTAGTTTCCGTTTGCCAAAATTCGGCATTTGTGAAATGTTCA
CTTACCGTATCTTAagtgatacacgttttttataagaataaactatataa
gaacataaggcttcgatggccaaaatgttaagaacatggttaagaacatt
tcaaggctttgttGACTCTGAAACActgaatttcttaggaaaatagacaa
aaatactcaaaaatggtgaaaataagaacatcaagaacatttttaggctt
aaaactcaaaaagttaagaacatctcttcaaaaattttggatgttcttat
aaaaaaacgtgtaacccaTTACAAAATGAATTTGCATTATTTTGCGAAAG
ACATCACCCCAGTTTAGTAGTATTTAGCGGTTTTTGTCAATTAAAAAGTA
ATTCTAATTTGCTTTAATTGTTATCATTAAAACAATACACCGGTGCGGAG
AGGATAATATTTTAGGAATATTCCATCTATGGAAACAAATACCCTCCATC
GCGATTTTTAAAACTCCCTCAAATCCGCTACTGATTATAAATATCACAAA
AAGTAttgtgaaatttttgaaaggtgATCATGCTAAAATATATCTAAGTG
ATGTTAAGTCATACttaacaattatttttgaaaattttgaaattttataa
atataGTACAAAATTGCATCACTAGAGTACAGTAGAGCCCTTTACTTTAC
CCTGGAATTTCTTTCGTAAACTTTCTTTATGATACCGTCGCTATGGGTAA
GATCCCACTTTCCGGTCTAAGATTCCATTGACTTTTCCGGAAAATTTCCG
TAATATGTCTCGAGACCGGTATTAGATTAGGACGGGTTTTTTTCTTAAGG
GACGGAAAATATTGTGTTAACTTTGGAAACTACCTTAAACCGGAGTGCTA
GTGTAGGTAGTGGAATCGTGTCTTACCAAAAACGACAGAAATGTAAAATA
TAGATATTTTTACTTGGGATGGACAGAACATATGGGACCTCAGACTATGA
TATTTAGGGCCCTTCGAGTGAATTTCTGCTACCCTTTCCCCAGgataaaa
aataatctttatcCTAAAGAATATAAAACTAAAATAATATCCGCtattta
ttcagttttaaagtttgaaatttcatgaaaatgacACTTGGCATTTTATA
TAACTAAACCAAGCAAACTCAattgaaatgtttgaaaatattttatcaag
TACTGATTCAACTGAATTCACTTTAGCCTACTTTTTCATATTGTTCATTT
GAAAAAACTGCTACGtactgaaaaattatgaaacttATAAAAACGATCAA
ATACTTTAAACTTCTCACtgaaaagaattttcttcgaaataAATTTATGG
TTATCTGTCCTACATTTGATTGAAAACATTATCTGGCAAGGAGTTTCAGc
tgaataatttttcttaatattttttaatgtatGTCTCGTGTCTTCGTGTC
TTGCTTAGCTTGCCATATTCAACCAATGCTTCAGTCCTAACAAATAATGT
ATCATTGAAACNTGTATGGCTCGTGCCATATTCAACCAATGCTTCAGTCC
TAACAAATAATgtatcgttgaaaagataattcagagctTGACTGTATCAT
TTTATGTCATATCGAAAACTACGTCCTCTGGTTTAAAAGGTCGTTCGTCT
AAGTGAAAAACAGTAAAACGGGGCCTTGAATTTTCATCGGCATATTATAT
GTTGAAATCGGTTGCGAATCGCGAACCAAACAAGAATCGATGTACAATGG
ATTACCGATATGCATCAATGCTCTCCTACAGAATGGCTTAAAGTTAAAGT
GGTTTGACGTATTCCCAGTAACGAAATATAAGAATACTAATGGAACCTCA
TCATTCTGAAAGAATTGAGGATTCCCAGCTGCAAGGACGAATAATCGCAA
TGTAGGGATGGCGTTGATGATATCGTGCACCCATCAAGCATCGTAAGCAA
AAATAATTAACCAATTAACCCACGCAAGCAAAATCATTATTATAGAGCTC
TTTATAAGCTATTATGGGCGTATCAAAAGGTATAAAATTCGTCAACGACa
attttaatttgtaatttttcaatttcaagcttaCAAATTTTATGTACGCA
TTAATATCACTTCCAATGTATTATACATTTTTGTATTGAACTTATGGCAC
GCAGTTAACCGAATGAGGTTTTCTTTTCAACTACACGTTTTAGAACAtag
aggctgaaattcgtcgaaatattgagaacatcgtaagaacatgcccagcc
tcagtttggagaAAAATGACGAGAAACTACAATTTtctcctcttttcaag
cagttttaaccgaacttagggctggattttctaaaatcgagagtcaaata
ttgtccaaattttacattttaccaattttaagtgctctttattttgcatt
atattgtcgatttagagtagtctgaaaaattaagaacgcatctaagaaca
ttttaggctgaagattgctaaaaaaataagcacatccaggctcagccaaa
ttttaggtgttctaataaaaaaacgtgttgtTGTCGGAGGTCTTTCCGTT
TAAAAATAGTAGAATTGCCTTTTTCCTTGAAATAGGAAAAATAAAGAGTG
TCCAATCAAGTCCATGCCAAATTCCGCGTAACCACTCTCAATTTATTCGT
CTAAATTGGGTTGGAATTGCAACCTTCTGTGCCAAAAGACTTGACCTGTA
TGTGTAAGGAATATATACAGTAACaggttttgaaaatgaagtctGCATTT
AATTATCCCGTTATAATTCTCGATTGAGTACTTGCAATCGAGGCCAAAAT
TGTTGACTAGGTTGCAGTTTTTAAATGATTTGTCTCGAAGCAATGAAACC
TTTGGATCATCAATGAATTTGATAGGAACCAAGAATTAAGGAACTCAAAT
ATCATAGTTTCTTCATAGTTTTATACAGGTTTTACCGATAGGATTACCAT
TACCATGGTAACGCAGAAACAACACTTTAAGCACCATTTCTAATCTGTAA
CACCCTTAAGTGAATCCTGCCCAAAGACTCTAAACTATTTTGTTTATCTC
GTGAACGAGTTTTCAATTACGCAAAACGACATCCGCATTTGCCGACGACT
GGCGACAAATTTTCGTTCAGCAACGAGTATTACGTCATAAACGAAGATTA
CTCGTTGTTgccatcagattttgaaatcCGATACAACACAACTATGTGGA
AATCTAGATTATGACATAAGACAAAATACATAGTACAATATAAGGTTATA
AGAATATTGACTTGAATACACCATACATAGTTAAAcatcaaaacttaaaa
ttttcacaaatattCCAAATAAAATATAGTAGCGCTTTTTATATTCTGAA
GTGATTATCATTTTTCCAATCTTCAATCTTTGGGTGTTGAAATTTTCCAC
TTCAATCTTTTCTTaagtaaactttttttcttataagaaaaaaatgttta
aagtcatgtgatttccaaatttttcgTTTTCAATATTCATCATAATTCCT
TTGTCTTTCCTACAGTTACAAAAGAGTAAGGTCATGATGCCATGCTgttt
ttttagccaatcagagtCGATCAATCTATCCAGTCAGCCAATCAAAAAtc
ttgattctaaaaaaaaaaggaaattgttaaggaacttgtATCAGCAAATG
ACTATGCTTTGTACCTGTCGCTAGCCTTTAATTGTTTTACACATTTAATG
AGTTTCCTAACCGATTAAAAAGAGATCCAGGCTAAATAAATTCTTTAAGT
GTGTTTTGCGTTCGCATTATAAATTGAGGTGAAAAAGTCTTAGTTCTTCA
GTTGAGCGTTTGTAAGCAGGATAGCATTAACCATAAAGAATCTCAGATTT
TGCAAGGAGGCTACAAAGCGACGTTTTTTGGAAATACTTGGAAGATTTCA
ACGTTAGAATTCAAACCAAATCGCTTCAATCTATATTTACAGGCACCACC
AAGAGAGCAACAAAGACAAAGACACAACCATGCCTTCATCAATGGAAGAA
ATTCGAGATCCATTTTTCTGGAAAGCCGTATTCGCCGAGTTTTTCGCAAC
TGCACTTTTCGTTATGAATGTTACGACCGTCGCAACATTGTCAGCCGGAT
TCCAAACCGAGAAAATTATCGTTATTTCCCTCGCTATCGGTATGTCAGTG
TCGATTCTGGCGCAGATTTTCGGACCAGTCTGTGGTGCCCATTTAAATCC
AGCTGTTACTGTTGCACTGTTTGCCAAAGGAGCAATTACCTTCGCAAGAA
CTTGCTTTTATTTCATAATCCAACTGATAGGAGGTGAGATTGATTAAATT
ATTAAAACTTTGAGATTgaaccggtctgtaaaataccaaagtTTGAATGA
TGTAAGAAAAATACTAAGTCCCTTCAAAAAAGGTCTTCTATATAGGTATC
ACGTGATTTATGAGCAAAATAgtagaaaattgaaaacaatgtTGTGACCC
TATAACTGAATGCTAGAGTCGAATTTCATGCGTAGGATTTGAAGGCACTT
ATTTCCTACATAAGTTGCTCAGACCACATGgttttcatgcaaaaagaaag
tatgctagattcaatccgtaaTCCAAAAGGCGGCGTAAATCTCCTATAGA
TTTTCTATGAAAACTGGATtgaattccactttttcatgcTTGGAAGAGGT
TGAGCCTCTAGCCTTCAACTTAAAACTCAACGATGACGCAAAGTTTTCCC
AGATGACGATAATGTCCACTTTTTTACACCAACtaggaaattttcatttc
aatttttcataccaTTTGATAAACAAAGTTTCTCCTTTGATTTCTTAGCT
ATCGTTGGTTCAGCTATCACATACGGGCTCATCCCTGAAGAGCAGCATGG
AGCATTGGGTGCCCTCCAACNTTGGTTCAGCTATCACATACGGGCTCATC
CCTGAAGAGCAGCATGGTGCATTGGGTGCCCTCCAACCTTCACCAGGTGT
CACTCAAGCACAGGCGTTCTTCGTTGAGATGTTACTGACTGTTTTGTTGT
GTTTGACCGTCTTCTCTTCCACCTCAACTGATCATGGACGAAAAGATTTT
GGATTCTCAAATGCATTTGCTATTGGAATGTCAGTGACTGTCTCTCATTT
GCTTGGGGTAAGTTTTATTTTGAGGACATTTTGATGCCAAGGGATCGTGC
ATTTTTACAGTTCAATGAAGGCGACTGACTTAGGGAAAATACTCAGTGCT
CAGTTGAAAAACCCTGTTGACTGGTGCAATACCCTAATTGAGATATAAAA
TATATCCTCAAAATGCTTCGTAACCAACACGCATGTGAAAATTTTCCAAG
CTCAcctaaactaaaaaaaataaagtacaaACTGTATACCGTAGCTTGTT
CAATTACCTCAAAGGTAGATATCCTGTGCGTGTGCGGTCCACGCCAATCC
ATTTAGTTGTGATCCTAGGATAAGATATTctgatttcagaaaaatttaat
ctAATGCTAAGAATAACACCATCATGGGATTTGGCAACTGAATCTAAGAA
TGccaatttttagagcattttagggtaattgccaattacccctcAGTAAC
ACTGAaagctttcacaaaaatgccaaaacttTAATCTTAGATAATTCAAA
TGGAAAATTGTGGGGAGATAGTCTCATAGGAGTGATTTTGGATCACTCTC
CATTTGTATGCTCAAAAATAGTGTTACTTAGTGAACCATTTTAATATTCA
ACTTATGCTCACGAATGCCTAGCTTAAAATTTTAAGAGGCTcgttaaaaa
aaagttaaagttaaaTATGTTGGacctttattttttgaagaaaaggtGAC
CGGTAACTGTATAATTAAATTGTACTTAATTGTTTTTAAGTACATGATTT
GTAGGGCCCACGCCATGGGTGGGAGGGATGGAGGGGAAGctctctttttt
tcaaataaaaatctattttaaaatatCACAATTCACACTTTTAACATTCA
TTTTTAACATTCATTTCTAAGCAAAATCAGTTTGAAATAGGGCCATTTTA
AGCTTTATTAGGAGATAAGACCGAAATTTTAGCCTAAAGCAGCTTTTTTC
GGAAGTCTTTCGAGGGTAATTTCACTCATGCGTCAGCACATACCCAAGCT
CCATCTTTTTCGCCTAAGCACGTTCGGCAAATATTTCATATAAAGCTGGA
agtcaaattttttaattaaaaatatattttctaaaCGGGTTTTTGATTAC
TGCTAATAACGTTTTAACAGCGGAAGAAAAAACTGCAAAGATTCTTTCCT
GAAAAACTCAATCTTCCTTTCCTAAATGAAAGTTCCTGAAAAGAAATTGT
AACAACTTCTCTGAAAATGAGACAAGAAATAAGGATATTTTGAAAGAGTA
ATTAACGACTTAATGAGTGCATACCGCTTCTAATTACTCCGAGATGATTC
AGCTAATTTGTGAAGTGATGGGATAGCTTCCTGGTCTAtaattggttcaa
tgtatcTTGATCTCAATAAGACCATGATGCGAACTGctaattgaaaatgt
tttgtaaaaacaaaacaacaacagcGCTTTTTGGACTCAACCTCCTGATG
AAAAAAAACGAATCCGACAAGACTTTGGCAGGGTTAAACTCCAAGGAGTC
TTCCAAAAGATTCAGGGTCCCATATCGACCAACATGTCAATCATTGGTGA
CTTCCTCGTAACTCTGCCTTCGGTAGCACGTCCCACCCTACGTTGAAAAT
ATAACAGTTACTTATTTTTCTATCATAAAGTAAGCCTTCTAACCAACGTG
TATAGAGAACAAAGAAACGATACTACCTaatctaatacaccttttcgacc
gtagccgccaattaccgTGCGGGCATTTTTCTTGTCCATTTTACCACCCT
TAAGctgtcccagtctttttttcgcacctatagacaataggaaaaagtgt
aaaaaaggatttgaTCGAATTTAGGGCGCGATAATttaataataaagtgg
cacgcgcctgaccaaCTACGCGAATACAGTCGAAAATAAGATGTACAGTC
GATTCTTTCGTGCTTTATTCTTAATAGAGCAAAATATTCTCAAAGTTGGT
TTGTTTCTTTTCCAACAGGTACCAATGACAGGATCAGGCATCAATCCAGC
ACGTGCTCTTGGACCTTCGGTTGTCACTGCTACTTTCCATGAATCGCACT
GGGTAAGTTGTTGTAAAGGAATTGTTTATTgatcaaatttcatttgtctg
tTCTCAGAAACCATTCGAACTTAACTTCGATAGAATTAAATTATCTACtg
taagggaactaattttgatgagcagcaaaaatcctgaaagtttttaattt
ttaattttggtgggaactaattttggcgaaatttGTCTAAATTTGCGGAA
TtctccaaaattagttcctttaAGGTAGCAACAAAATTTAGAGTTCAAAA
TGTCATTATTGTTTCCTTTCAATCTCAGCTGTATTGGATTGGACCGCTAG
TTGGAGGTGTTTTCTCCGGCCTTTTCTACAGATTCGTGTTATCTGTCGAA
CCACCAAGTCAAGAAACCAAAGACATCAACCTCAAAACTGTTTCTGCCGC
ATAAGGAGCCATATAGGATGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030851XLOC_030851Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048505-exon-scaffold_143-1491911889:337912..337942TCONS_00048505-exon-scaffold_143-1491911889:337912..337942Clytia hemisphaericaexon
TCONS_00048505-exon-scaffold_143-1510915933:337912..337942TCONS_00048505-exon-scaffold_143-1510915933:337912..337942Clytia hemisphaericaexon
TCONS_00048505-exon-scaffold_143-1575043694:337912..337942TCONS_00048505-exon-scaffold_143-1575043694:337912..337942Clytia hemisphaericaexon
TCONS_00048505-exon-scaffold_143-1491911889:343854..344050TCONS_00048505-exon-scaffold_143-1491911889:343854..344050Clytia hemisphaericaexon
TCONS_00048505-exon-scaffold_143-1510915933:343854..344050TCONS_00048505-exon-scaffold_143-1510915933:343854..344050Clytia hemisphaericaexon
TCONS_00048505-exon-scaffold_143-1575043694:343854..344050TCONS_00048505-exon-scaffold_143-1575043694:343854..344050Clytia hemisphaericaexon
TCONS_00048505-exon-scaffold_143-1491911889:344710..344731TCONS_00048505-exon-scaffold_143-1491911889:344710..344731Clytia hemisphaericaexon
TCONS_00048505-exon-scaffold_143-1510915933:344710..344731TCONS_00048505-exon-scaffold_143-1510915933:344710..344731Clytia hemisphaericaexon
TCONS_00048505-exon-scaffold_143-1575043694:344710..344731TCONS_00048505-exon-scaffold_143-1575043694:344710..344731Clytia hemisphaericaexon
TCONS_00048505-exon-scaffold_143-1491911889:344799..345018TCONS_00048505-exon-scaffold_143-1491911889:344799..345018Clytia hemisphaericaexon
TCONS_00048505-exon-scaffold_143-1510915933:344799..345018TCONS_00048505-exon-scaffold_143-1510915933:344799..345018Clytia hemisphaericaexon
TCONS_00048505-exon-scaffold_143-1575043694:344799..345018TCONS_00048505-exon-scaffold_143-1575043694:344799..345018Clytia hemisphaericaexon
TCONS_00048505-exon-scaffold_143-1491911889:346980..347063TCONS_00048505-exon-scaffold_143-1491911889:346980..347063Clytia hemisphaericaexon
TCONS_00048505-exon-scaffold_143-1510915933:346980..347063TCONS_00048505-exon-scaffold_143-1510915933:346980..347063Clytia hemisphaericaexon
TCONS_00048505-exon-scaffold_143-1575043694:346980..347063TCONS_00048505-exon-scaffold_143-1575043694:346980..347063Clytia hemisphaericaexon
TCONS_00048505-exon-scaffold_143-1491911889:347340..347482TCONS_00048505-exon-scaffold_143-1491911889:347340..347482Clytia hemisphaericaexon
TCONS_00048505-exon-scaffold_143-1510915933:347340..347482TCONS_00048505-exon-scaffold_143-1510915933:347340..347482Clytia hemisphaericaexon
TCONS_00048505-exon-scaffold_143-1575043694:347340..347482TCONS_00048505-exon-scaffold_143-1575043694:347340..347482Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_143supercontigscaffold_143:337912..347482 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.472628	0.0685958	0	0	0.746156	0	0	0.523507	0	0	0.889407	0.275166	0	0	0.359707	0	1.05129	0.309128	0	0	0.0857134	0	0.471541	0	0	0.0609195	0.319164	9.10223e-05	0
Blast
[Close]
BLAST of TCONS_00048505 vs. Swiss-Prot (Human)
Match: AQP1 (Aquaporin-1 OS=Homo sapiens GN=AQP1 PE=1 SV=3)

HSP 1 Score: 111.309 bits (277), Expect = 7.522e-29
Identity = 76/243 (31.28%), Postives = 109/243 (44.86%), Query Frame = 3 
Query:   84 EEIRDPFFWKAVFAEFFATALFVM----------------------NVT-------TVATLSAG-------------------------FQTEKIIVISLAIAIVGSAITYGLIPEEQHGALGALQPSPGVTQAQAFFVEMLLTVLLCLTVFSSTSTDHGRKDFGFSNAFAIGMSVTVSHLLGVPMTGSGINPARALGPSVVTATFHESHWLYWIGPLVGGVFSGLFYRFVLSVEPPSQETKD 650
             E +   FW+AV AEF AT LFV                       NV        ++ATL+                           F+    I+     AIV +AI  G+       +LG    + GV   Q   +E++ T+ L L V ++T  D  R+D G S   AIG+SV + HLL +  TG GINPAR+ G +V+T  F  +HW++W+GP +GG  + L Y F+L+  P S +  D
Sbjct:    3 SEFKKKLFWRAVVAEFLATTLFVFISIGSALGFKYPVGNNQTAVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISIFRALMYIIAQCVGAIVATAILSGITSSLTGNSLGRNDLADGVNSGQGLGIEIIGTLQLVLCVLATT--DRRRRDLGGSAPLAIGLSVALGHLLAIDYTGCGINPARSFGSAVITHNF-SNHWIFWVGPFIGGALAVLIYDFILA--PRSSDLTD 240
The following BLAST results are available for this feature:
BLAST of TCONS_00048505 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
AQP17.522e-2931.28Aquaporin-1 OS=Homo sapiens GN=AQP1 PE=1 SV=3[more]
back to top