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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048510 ID=TCONS_00048510|Name=TCONS_00048510|organism=Clytia hemisphaerica|type=transcript|length=2036bp
CAGACGCTACAACAATCTTGGGTTGGAAGTTGTCCAATAATAGTACAAAT
TAATACTAGTGTGTGACTGATTGTAAGAGCCAGGATTTTACTGTGTTCTT
AGCCCAATTCATAAGATTATATATCAGTGAGAAAtagcaagcaaaaaaaa
accaGTGATAATAAGGACAAGGTCGAAGGGGTCAAAGTACATTCCAACCA
TTGgacaaattaaattttcaactGAGGTCACAAACTGAATTTTTAATTGT
TTGCTTTTCTTTCAGTCAGCAAAGATAATAAAGAAaatctgtttgtttgt
ttatgttCTGGTCTACGTCAATTTGAGTTGGTTGAAACAAATTGAATGGA
GATGGTAAAAACCAAAGATTCACCCCCGTCAAACAAAAAgCATGTCTTCT
CTGAAAGACTTATCGACAAAATCCGTGAAAGAAGCGATTCATTATTTCTC
AGTCCCAGTCCCCGGTTAAGTCGAAAGCGTGGTAGCAGTGCAGGGCCATC
AATAATCGAACCTCAAGGACATCAAAGAATTGTGGTTTTAGGACCGAGCA
GTGTTGGAAAATCAACCATTTGTGCAACATACGCCGGTGTAGATTATGAT
TTAAGTGCTTTACGATACAGCAAGAAGAATGAGATTTACAACAGCGGTGT
ATTTATACAAAGCGAGACGGCAAACCATGTTAAACAATACAATATTGAAA
TATCAGTTCCAAAAGGGACACGGTGGGACGGTACGGTGAATGGATATAAA
GAACTTTTATTAGAATCTGATGGATATTTGTTAGTGTATTCTAAAGAGAA
TAGACAGAGTTATATGAAATTAGTAGAACTTGTGTCCGATATACAAAAAC
TACGGAAATGTTGTATTCCGCCTATTGTTGTGGTTGGTAATAAAGACGAT
TTGGATTTCAGTAATACGTTAGGTATACACGATTCAGAACATCATGTTTT
AGGAAGCTTTCCGCATTTCAACGTGTCCGCATTGGAAAATGACGGACTTC
AGGAAGCTTTTAAATGTTTAGTACAAATGGTGgcacagcaaaaaatcttg
acGCTAACGTGACATTGGTGACGTAAAATTGACGATGAACCGAAAGAGAG
ATGACAACGCTTGAACAGATAAAATAACACTCAGTTAATACAATGGATCC
CGCGAGATGCAGAAAATTTATACATAATTCTCTCCGTTCCAAGTGGAGAT
TTCGAATGACTTTGTTTAGAAGGCACTATTATCATAGTTCAACCTTTTTG
ACAAATGACTTCAAAATCATATGAGAAGTCATGGTATGAACGCCCTGGGA
TCACAGACATGATTCAAAACATTCTTAAAGCATGCGACGTTCTTTTAAAT
TTGAACCAAATACCCTTATATGGAAGACTTACTAAAGGCGGAGGAAGACA
CTATTTAATATGacgagaaaattgaaaatttgtaaattgatatTTAAAAC
GGttctttttatttatgtttaaagttttttatatttgttttaATTACATA
TCTTTTGACTGACTTAATATGACTTTATAGCATGATGTATATACAAAGAG
AATTcgacaaatcaagaaaaaatggCATAGTTGTATCATTTTATGTATTT
AGATCGAATCCAGTCCAATCCAAAAGCAAGGTTGTTTTTTACCGTCCATG
TGAAAATAATAGATTCAGCTGAGCTCAAATATCCATTTTAGAAAATAACA
CCGATGTTTCAATCCTTATACCGTAAATGTACGAATTCTGCGAATTGTGA
ACCTTTAAAAAATGTCTCTCATTTTTAATACGTAATATGGGGTAAAAAGG
TCATACGGATAACCAATATTGTAGTAGCCTCGATTCTACTATTAGTCTTT
TATACAAGCAAGAAAGCCCCCTGGTTGCAAGTTTCGTAGCAAAAGCGACA
AACAAAACTGAAATTCGATACCAGTATGATCCATTGTTACTCTGCCTCTG
CCACGATAGGGTCACGAGCGCATTGGAAAGCCGAAACAAAAGCTCCCAGT
TGAATCTTTTCCGATGTGCCAGCAGCTAAACGGAAC Run BLAST on NCBI protein sequence of TCONS_00048510-protein >TCONS_00048510-protein ID=TCONS_00048510-protein|Name=TCONS_00048510-protein|organism=Clytia hemisphaerica|type=polypeptide|length=238bp
MEMVKTKDSPPSNKKHVFSERLIDKIRERSDSLFLSPSPRLSRKRGSSAG
PSIIEPQGHQRIVVLGPSSVGKSTICATYAGVDYDLSALRYSKKNEIYNS
GVFIQSETANHVKQYNIEISVPKGTRWDGTVNGYKELLLESDGYLLVYSK
ENRQSYMKLVELVSDIQKLRKCCIPPIVVVGNKDDLDFSNTLGIHDSEHH
VLGSFPHFNVSALENDGLQEAFKCLVQMVAQQKILTLT Run BLAST on NCBI transcript from alignment at scaffold_143:374775..378736+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048510 ID=TCONS_00048510|Name=TCONS_00048510|organism=Clytia hemisphaerica|type=transcript|length=3962bp|location=Sequence derived from alignment at scaffold_143:374775..378736+ (Clytia hemisphaerica)
CAGACGCTACAACAATCTTGGGTTGGAAGTTGTCCAATAATAGTACAAAT
TAATACTAGTGTGTGACTGATTGTAAGAGCCAGGATTTTACTGTGTTCTT
AGCCCAATTCATAAGATTATATATCAGTGAGAAAtagcaagcaaaaaaaa
accaGTGATAATAAGGACAAGGTCGAAGGGGTCAAAGTACATTCCAACCA
TTGgacaaattaaattttcaactGAGGTCACAAACTGAATTTTTAATTGT
TTGCTTTTCTTTCAGTCAGCAAAGATAATAAAGAAaatctgtttgtttgt
ttatgttCTGGTCTACGTCAATTTGAGTTGGTTGAAACAAATTGAATGGA
GATGGTAAAAACCAAAGATTCACCCCCGTCAAACAAAAAGTAAGACAAAT
TAACTTTTTTCATTTAATCAAACCACTATGCTTTACAACAGATGTCTGAA
TACATAATGGTGTAAAAACCACTTTGGTCCAATAACTTCATTAATGTCAT
TCACTGTCATTTTTGACTGGATACACAGAATACCTAAGGTTTCTCAGTAA
GAATGAAAGTAATAGATCTTTTAGAGCACATTAAGTATAGTCTCATACCA
CTGTATCTGGTATCATTTTTACCGACAATAGGTGAAGTTAATACTCAGCC
CTGGAtggaaaaaaacataaacaatgtAAGGTCGGCTCAGAAAAATTAAG
CCTTAATAAATTTGTTTATGGGATCTGTTTTTTCTGTTTCCATGGTTTAG
GTTTTAAACACACACCTATATACAGAACATACTGTTCTGACCTTCTTCGT
GAACAGAAAAAACTACTTAAAAgcggaaatgaattttaatctttaaacta
tttttAACACGAAAATGAAACATGAATGATGTGTTACACAATTTTAATTG
TTGGTCAGCTCATGATGTTTTCAAAGTTGAATAAGCTTGTTGAATCATCG
CTAAGTTCATTGTTGAACCATGAGCACGTATCAAGGCCCTGATCACGAAA
ATTCGAAGGCTAGTAATCAGAAAAGTTCAGAGATTTAAACGAGTGTACGT
TCTAGATGTTACTCAGTTGAATCTCATTCAAACAAACTTCAAAGGGACCA
AAATATATTCTTCGATTAAGAGGAAAGATTTTAATTAGTTGAAAGATGAG
AATAACAGGgacattaatttttaagaatttctaaATTGAAGGGACCACCA
GCTTCACTCTAAATAAAGAACGGCTTGATCAATAACGATACCAAAATAGC
CAGAAATGACTGTACTTGCGGTGGCAGTGTCTTACTCATTGCTCTTACTA
TATCTCTATTCAAACTACCATTCTAGAACGAAAATCCACATTCTTTTATC
ATCACTGAAAACTAGAAAAACTCGTTCGTGCACCACGAGACTTAGCGATA
TTTGGCAACTCAAATGCATAGCATAGCAAAAACTCTGTCAAATTTAAATG
ATGCAAAAAAGGCATACCAGGTCAATGATGGCGATCAATTTCATGCACAG
TACGCgaaaataaattgatttaaGTACAAAGTGCCTTTTCAAAATTAATC
CCTAACAATAACAAATTAAGTTCAGAAAGTTATTTCTTCAATTTAAATCA
CCCTTAGATATCACTTCATATGCCAAAAAAGGACAATACAATGAATATGC
CTGACACGTCTCTTTTTGTTAGGAAAAATCTtcattgaaataaaaacatt
gcagCTTAGTTGCTTCctctaaatgaaaaataaataaaccgTTCCAAAAA
CACGAATTCAACTCTCCAAGTAGGCAGCTACTCAAAATTTGGACTTTCAA
GACTATTCTGTGAGAACCAATCGACCATATATTTCACATCACGTACatgg
tttcttataaaagacctttcatcaaaaattggaaaaattcaaCTTAAAGT
ATATTTGCATAAGGATTTATTGTTGCAAGACCAaggagaaaaagtttttt
gaaatcacATTGTTTTACTTAATCCCCTACTCATGTATAAGATTGATACC
TTTCCACATGTCAGTATAAAAAGGGAAACAAATTCTGATGAAAGTTAATA
AACGAATACATGTGAACATTATAAAGACGAGGGCAAAGAGAAATGGGATT
TACAAAGAAACTATTAAGGTAAGATGAAAGATGAAAACAAGAAATTGAAG
CAATCATAAGGATAGTTGTTCGAGTTCTAAATTTCAAGGTTCCAAAGGGG
AAGATCATTTAGCCGTTATATGTTAGTGGGCGTAAAAACCAGACAACAAG
AAAATTGTATCTGAAGTTCTTAGTCTATGAAGATTTTAaccctttttctt
ttcatttatttttaggCATGTCTTCTCTGAAAGACTTATCGACAAAATCC
GTGAAAGAAGCGATTCATTATTTCTCAGTCCCAGTCCCCGGTTAAGTCGA
AAGCGTGGTAGCAGTGCAGGGCCATCAATAATCGAACCTCAAGGACATCA
AAGAATTGTGGTTTTAGGACCGAGCAGTGTTGGAAAATCAACCATTTGTG
CAACATACGCCGGTGTAGATTATGATTTAAGTGCTTTACGATACAGCAAG
AAGAATGAGATTTACAACAGCGGTGTATTTATACAAAGCGAGACGGCAAA
CCATGTTAAACAATACAATATTGAAATATCAGTTCCAAAAGGGACACGGT
GGGACGGTACGGTGAATGGATATAAAGAACTTTTATTAGAATCTGATGGA
TATTTGTTAGTGTATTCTAAAGAGAATAGACAGAGTTATATGAAATTAGT
AGAACTTGTGTCCGATATACAAAAACTACGGAAATGTTGTATTCCGCCTA
TTGTTGTGGTTGGTAATAAAGACGATTTGGATTTCAGTAATACGTTAGGT
ATACACGATTCAGAACATCATGTTTTAGGAAGCTTTCCGCATTTCAACGT
GTCCGCATTGGAAAATGACGGACTTCAGGAAGCTTTTAAATGTTTAGTAC
AAATGGTGgcacagcaaaaaatcttgacGCTAACGTGACATTGGTGACGT
AAAATTGACGATGAACCGAAAGAGAGATGACAACGCTTGAACAGATAAAA
TAACACTCAGTTAATACAATGGATCCCGCGAGATGCAGAAAATTTATACA
TAATTCTCTCCGTTCCAAGTGGAGATTTCGAATGACTTTGTTTAGAAGGC
ACTATTATCATAGTTCAACCTTTTTGACAAATGACTTCAAAATCATATGA
GAAGTCATGGTATGAACGCCCTGGGATCACAGACATGATTCAAAACATTC
TTAAAGCATGCGACGTTCTTTTAAATTTGAACCAAATACCCTTATATGGA
AGACTTACTAAAGGCGGAGGAAGACACTATTTAATATGacgagaaaattg
aaaatttgtaaattgatatTTAAAACGGttctttttatttatgtttaaag
ttttttatatttgttttaATTACATATCTTTTGACTGACTTAATATGACT
TTATAGCATGATGTATATACAAAGAGAATTcgacaaatcaagaaaaaatg
gCATAGTTGTATCATTTTATGTATTTAGATCGAATCCAGTCCAATCCAAA
AGCAAGGTTGTTTTTTACCGTCCATGTGAAAATAATAGATTCAGCTGAGC
TCAAATATCCATTTTAGAAAATAACACCGATGTTTCAATCCTTATACCGT
AAATGTACGAATTCTGCGAATTGTGAACCTTTAAAAAATGTCTCTCATTT
TTAATACGTAATATGGGGTAAAAAGGTCATACGGATAACCAATATTGTAG
TAGCCTCGATTCTACTATTAGTCTTTTATACAAGCAAGAAAGCCCCCTGG
TTGCAAGTTTCGTAGCAAAAGCGACAAACAAAACTGAAATTCGATACCAG
TATGATCCATTGTTACTCTGCCTCTGCCACGATAGGGTCACGAGCGCATT
GGAAAGCCGAAACAAAAGCTCCCAGTTGAATCTTTTCCGATGTGCCAGCA
GCTAAACGGAAC Coding sequence (CDS) from alignment at scaffold_143:374775..378736+ >TCONS_00048510 ID=TCONS_00048510|Name=TCONS_00048510|organism=Clytia hemisphaerica|type=CDS|length=1434bp|location=Sequence derived from alignment at scaffold_143:374775..378736+ (Clytia hemisphaerica)
ATGGAGATGGTAAAAACCAAAGATTCACCCCCGTCAAACAAAAAgCATGT
CTTCTCTGAAAGACTTATCGACAAAATCCGTGAAAGAAGCGATTCATTAT
TTCTCAGTCCCAGTCCCCGGTTAAGTCGAAAGCGTGGTAGCAGTGCAGGG
CCATCAATAATCGAACCTCAAGGACATCAAAGAATTGTGGTTTTAGGACC
GAGCAGTGTTGGAAAATCAACCATTTGTGCAACATACGCCGGTGTAGATT
ATGATTTAAGTGCTTTACGATACAGCAAGAAGAATGAGATTTACAACAGC
GGTGTATTTATACAAAGCGAGACGGCAAACCATGTTAAACAATACAATAT
TGAAATATCAGTTCCAAAAGGGACACGGTGGGACGGTACGGTGAATGGAT
ATAAAGAACTTTTATTAGAATCTGATGGATATTTGTTAGTGTATTCTAAA
GAGAATAGACAGAGTTATATGAAATTAGTAGAACTTGTGTCCGATATACA
AAAACTACGGAAATGTTGTATTCCGCCTATTGTTGTGGTTGGTAATAAAG
ACGATTTGGATTTCAGTAATACGTTAGGTATACACGATTCAGAACATCAT
GTTTTAGGAAGCTTTCCGCATTTCAACGTGTCCGCATTGGAAAATGACGG
ACTTCAGGAAGCTTTTAAATGTTTAGTACAAATGGTGgcacagcaaaaaa
tcttgacGCTAACGTGAATGGAGATGGTAAAAACCAAAGATTCACCCCCG
TCAAACAAAAAgCATGTCTTCTCTGAAAGACTTATCGACAAAATCCGTGA
AAGAAGCGATTCATTATTTCTCAGTCCCAGTCCCCGGTTAAGTCGAAAGC
GTGGTAGCAGTGCAGGGCCATCAATAATCGAACCTCAAGGACATCAAAGA
ATTGTGGTTTTAGGACCGAGCAGTGTTGGAAAATCAACCATTTGTGCAAC
ATACGCCGGTGTAGATTATGATTTAAGTGCTTTACGATACAGCAAGAAGA
ATGAGATTTACAACAGCGGTGTATTTATACAAAGCGAGACGGCAAACCAT
GTTAAACAATACAATATTGAAATATCAGTTCCAAAAGGGACACGGTGGGA
CGGTACGGTGAATGGATATAAAGAACTTTTATTAGAATCTGATGGATATT
TGTTAGTGTATTCTAAAGAGAATAGACAGAGTTATATGAAATTAGTAGAA
CTTGTGTCCGATATACAAAAACTACGGAAATGTTGTATTCCGCCTATTGT
TGTGGTTGGTAATAAAGACGATTTGGATTTCAGTAATACGTTAGGTATAC
ACGATTCAGAACATCATGTTTTAGGAAGCTTTCCGCATTTCAACGTGTCC
GCATTGGAAAATGACGGACTTCAGGAAGCTTTTAAATGTTTAGTACAAAT
GGTGgcacagcaaaaaatcttgacGCTAACGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048510-exon-scaffold_143-1491911889:374775..375163 | TCONS_00048510-exon-scaffold_143-1491911889:374775..375163 | Clytia hemisphaerica | exon |
| TCONS_00048510-exon-scaffold_143-1510915933:374775..375163 | TCONS_00048510-exon-scaffold_143-1510915933:374775..375163 | Clytia hemisphaerica | exon |
| TCONS_00048510-exon-scaffold_143-1575043694:374775..375163 | TCONS_00048510-exon-scaffold_143-1575043694:374775..375163 | Clytia hemisphaerica | exon |
| TCONS_00048510-exon-scaffold_143-1491911889:377090..378736 | TCONS_00048510-exon-scaffold_143-1491911889:377090..378736 | Clytia hemisphaerica | exon |
| TCONS_00048510-exon-scaffold_143-1510915933:377090..378736 | TCONS_00048510-exon-scaffold_143-1510915933:377090..378736 | Clytia hemisphaerica | exon |
| TCONS_00048510-exon-scaffold_143-1575043694:377090..378736 | TCONS_00048510-exon-scaffold_143-1575043694:377090..378736 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_143 | supercontig | scaffold_143:374775..378736 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005525 | GTP binding |
| GO:0003924 | GTPase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003924 |
GTPase activity |
| molecular_function |
GO:0005525 |
GTP binding |
Blast
The following BLAST results are available for this feature:
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