TCONS_00048532 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048532
Unique NameTCONS_00048532
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1655

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048532 ID=TCONS_00048532|Name=TCONS_00048532|organism=Clytia hemisphaerica|type=transcript|length=1655bp
gcaaaataaaaaatgtcgtCACTTTCAAGAACCACAAATTCAGATTCAAG
AATCTATGTTGGTAATTTACCACAATTTGTGCGTCAAAGAGACTTGGAGG
ACCATTTTGATCGATATGGTAAGGTGAGGGGTATTGATATACACAGCAGA
TTTGATCCCGCTTTCGCCTTCATTGAATTTGAAGATTCTCGGGATGCTGA
TGATGCAGTATATGGAGAAGATGGCAAAAGGTTTGACGGAAACAGAATAA
AAGTTCAATTTCCAAGAGGAACTCCAAGAGATTCATCTGGCAGAGGAAGA
GGTAGTTCCCGTGGAGGTCGAGGTCCACCTGGAGGAAGCCGTGGAGGTCG
GGGTGGTAGAGGTCCACCCTCTAGAACTGATCATCGTATCATTGTATCTG
GATTACCAAAATCAGGCAGTTGGCAAGATTTAAAAGATCACATGCGAGAA
GCTGGTGAAGTTGTTTATGCTGATGTTTATAAGGATGGCACTGCGGTCTG
TGAATTCAAAAGTTCTAGCGATATGAAATGGGCTCTCAAGAACTTAGACG
ACACAAAATTTAAATCACATGAGCTGGGAACCTCTCTCAGTTACACAACC
ACATCCATCTCATTGATGTTGGGATAATAAAACATAAACCAGACAGGATA
CAAAGGAGAAAATTTCCACAGGATCATTCCCTAAGACCTACAAGGAGCAA
GCCAAATAAACAAACCACAACCCAGATGGTCATAAAAGGAAAACCCCTTG
TCCCTCCATGAGCAAATCTGTAAAAGGCACACACCATGTGAAAagccaga
aaaaaggaaaaccttAATGCTAGATGTGAGGTCAACTATCAATCCAAGGA
AATCCCAGAAGGCAAAAAAGAAAACCCTTAATCAAAAAGGAGCAAATACT
TCCAAAAACCGAAAGGATTTAGCTGTAAATAAGGAAGACCTATTCCAAAA
ACATCAGGAGTTGGATACTGTACATAAATAAATAGGATTAGTTTAAGATA
AATCCACAGGAGGATAAAGCCATATTTCATTTCTTGaacGAAACTTCATA
CATTCGCATAAAACAAGACAAATCACGATCTTCAAAATCTCGAACTAGAA
GCAGATCTCCAAGAAGAAGCCGCTCACCAAGGAGAAGATCTAGATCACGC
TCAAGATCAAAGTCACCGAAGAAAAGTAGCAGAAGCCCAAGCCGTAGCAA
AAGCCGTAGCAAGAGCAGAAGTAGAAGTCGATCACCACAAAAAAGCAAAA
GCAGAAGTCTTAGTGTAAGCCGTAGCCGTAGCAGGAGTCGCAGTCGCAGC
AGAAGTAAAAGCCAATGAGAATTGTCTTGTGAGGCACTAACGATTTTAAA
ACATGCAAATAGCTGTCTATcatatgtttaaaaaaagcgAAACTTCATAT
TTCTAGGATTTTTTTATCaggaaactttttttaaaccaaATTGTAAAGCA
CTTACATgaactttttttttgcatttacttgtaacaaaaatttactgctt
tttatttaagttttcatttttatcattgtaatattttgctttttactgtg
gtaattttttttatattatgctACTATAGCTAGTAGTTTTTAAGATTACT
TTGTGACTAGATGGAATTAGACTTTGGCAtatgtataaaaatttgaaata
caaaC
Run BLAST on NCBI

transcript from alignment at scaffold_143:84471..87463-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048532 ID=TCONS_00048532|Name=TCONS_00048532|organism=Clytia hemisphaerica|type=transcript|length=2993bp|location=Sequence derived from alignment at scaffold_143:84471..87463- (Clytia hemisphaerica)
GCAAAATAAAAAATGTCGTCACTTTCAAGAACCACAAATTCAGATTCAAG
AATCTATGTTGGTAATTTACCACAATTTGTGCGTCAAAGAGACTTGGAGG
ACCATTTTGATCGATATGGTAAGGTGAGGGGTATTGATATACACAGCAGA
TTTGATCCCGCTTTCGCCTTCATTGAATTTGAAGATTCTCGGTAAGTATA
TTGCTCTCTCAAGGCTTACAAGAAATACTTGCATTATTTCATTTACCTCA
ATGTGCATTTTTTCCATGAGCTTTCGCTTTGGTTTTTGCAATCTGTTTTT
TAAACTACTTTCATGCAATACATTGGGCTAATTATTACATGGATATACTG
GGATATAGGCTTACATAGCATCAAGCTGCCTGTCATTAAAGAAGATTAAT
TGTGACATAAAGAAGCTCTATTTGCATAGAAAATCTAGGGGATTAAATAA
TATTGGCTGGGTAGTTCAACTCAATGAGGACACTATACTTTGTTGAAGAT
GTTACCCTTTTCGAAGGAATATAACAACCTTATTGCAAAGCTCAAAAACT
GATCATCTTTTATTTCAAAATTGAGATGCTCTTTTTCTTAGAAAACATTT
GGAATTTATCCTTTTTTGCTAAATTTATTTATTCTGAATATTTTTTATTC
AGGGATGCTGATGATGCAGTATATGGAGAAGATGGCAAAAGGTTTGACGG
AAACAGAATAAAAGTTCAATTTCCAAGAGGAACTCCAAGAGATTCATCTG
GCAGAGGAAGAGGTAGTTCCCGTGGAGGTCGAGGTCCACCTGGAGGAAGC
CGTGGAGGTCGGGGTGGTAGAGGTCCACCCTCTAGAACTGATCATCGTAT
CATTGTATCTGGATTACCAAAATCAGGCAGTTGGCAAGATTTAAAAGATC
ACATGCGAGAAGCTGGTGAAGTTGTTTATGCTGATGTTTATAAGGATGGC
ACTGCGGTCTGTGAATTCAAAAGTTCTAGCGATATGAAATGGGCTCTCAA
GAACTTAGACGACACAAAATTTAAATCACATGAGGTATTTACACATTGAT
TGTATCAGCTCATTTTCTTTTTGGTTCTTACATTAGTTTCCATTCCATTC
TCATAAAAGAAGTATTTACTACCTAGGCTTTAAATTCCTCCTCATTTAAT
TTACTTACCTTTTATAAACACTTTAGAAAATCCATTATAGTAAATTCATG
TTTATCAAACCAAACCATGTGAAGATGATGAACAATATAAATTAGGCTGA
CATATTCTGTAATAGATGATACAATCAAGCTAGACTATTATTATTTTCCA
AATTAAAACAGAAAACTTTTTTATTTTGTTACTAGCTGGGAACCTCTCTC
AGTTACACAACCACATCCATCTCATTGATGTTGGGATAATAAAACATAAA
CCAGACAGGATACAAAGGAGAAAATTTCCACAGGATCATTCCCTAAGACC
TACAAGGAGCAAGCCAAATAAACAAACCACAACCCAGATGGTCATAAAAG
GAAAACCCCTTGTCCCTCCATGAGCAAATCTGTAAAAGGCACACACCATG
TGAAAAGCCAGAAAAAAGGAAAACCTTAATGCTAGATGTGAGGTCAACTA
TCAATCCAAGGAAATCCCAGAAGGCAAAAAAGAAAACCCTTAATCAAAAA
GGAGCAAATACTTCCAAAAACCGAAAGGATTTAGCTGTAAATAAGGAAGA
CCTATTCCAAAAACATCAGGAGTTGGATACTGTACATAAATAAATAGGAT
TAGTTTAAGATAAATCCACAGGAGGATAAAGCCATATTTCATTTCTTGGT
AAAACTGTTTTATATATTTTTAACATTGATTTTTTAAATTTAGAAAATAT
GATCTTCTTAAGTCTTAAGATTCTATATTGATTAAACTCAAATTAAAATC
TTCTTTTTTTTAAAACACATAGTTGCTATACTACCTTTTTTTAAATCAAT
GATTTTGAAATTAAAATTCTGTAGTTAATTTACTATGAAGAATTTGTAGC
CTTTAGGAACTTTTAGCAATTTAACGTTGTTTATTTCATTTTCAGAACGA
AACTTCATACATTCGCATAAAACAAGACAAATCACGATCTTCAAAATCTC
GAACTAGAAGCAGATCTCCAAGAAGGTAAAAATAATTTAGTAATATAGTG
TTTTCAAAGTTTTCAAAGTTGTTTTCTTCTCATAGACAGCCAAAAAAGGC
AAATTCATTTATCGAAAGTCTCACGCTCAGTCAGCTAATAATAAAATGTC
TACATCATTGAAGCTTACAATATAAATTTGAAAATATTCCTTTTTCTATA
AATAGGTTGGGAAATAATTAGTTTATCTAGCAAGGTCAGTGAAAACTTGT
TGGTGTTGACACAATGTCGGTGTTAAAGTATTAATTAAAAAAGTAAGTAA
CTTTAAAAAGTTAATCTCTTTTGAAAATGTAATAAAGATGATTATTCTTT
TTAGAAGCCGCTCACCAAGGAGAAGATCTAGATCACGCTCAAGATCAAAG
TCACCGAAGAAAAGTAGCAGAAGCCCAAGCCGTAGCAAAAGCCGTAGCAA
GAGCAGAAGTAGAAGTCGATCACCACAAAAAAGCAAAAGCAGAAGTCTTA
GTGTAAGCCGTAGCCGTAGCAGGAGTCGCAGTCGCAGCAGAAGTAAAAGC
CAATGAGAATTGTCTTGTGAGGCACTAACGATTTTAAAACATGCAAATAG
CTGTCTATCATATGTTTAAAAAAAGCGAAACTTCATATTTCTAGGATTTT
TTTATCAGGAAACTTTTTTTAAACCAAATTGTAAAGCACTTACATGAACT
TTTTTTTTGCATTTACTTGTAACAAAAATTTACTGCTTTTTATTTAAGTT
TTCATTTTTATCATTGTAATATTTTGCTTTTTACTGTGGTAATTTTTTTT
ATATTATGCTACTATAGCTAGTAGTTTTTAAGATTACTTTGTGACTAGAT
GGAATTAGACTTTGGCATATGTATAAAAATTTGAAATACAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030861XLOC_030861Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048532-exon-scaffold_143-1575043694:87273..87463TCONS_00048532-exon-scaffold_143-1575043694:87273..87463Clytia hemisphaericaexon
TCONS_00048532-exon-scaffold_143-1575043694:86430..86811TCONS_00048532-exon-scaffold_143-1575043694:86430..86811Clytia hemisphaericaexon
TCONS_00048532-exon-scaffold_143-1575043694:85666..86128TCONS_00048532-exon-scaffold_143-1575043694:85666..86128Clytia hemisphaericaexon
TCONS_00048532-exon-scaffold_143-1575043694:85339..85418TCONS_00048532-exon-scaffold_143-1575043694:85339..85418Clytia hemisphaericaexon
TCONS_00048532-exon-scaffold_143-1575043694:84471..85009TCONS_00048532-exon-scaffold_143-1575043694:84471..85009Clytia hemisphaericaexon
TCONS_00048532-exon-scaffold_143-1510915933:87273..87463TCONS_00048532-exon-scaffold_143-1510915933:87273..87463Clytia hemisphaericaexon
TCONS_00048532-exon-scaffold_143-1510915933:86430..86811TCONS_00048532-exon-scaffold_143-1510915933:86430..86811Clytia hemisphaericaexon
TCONS_00048532-exon-scaffold_143-1510915933:85666..86128TCONS_00048532-exon-scaffold_143-1510915933:85666..86128Clytia hemisphaericaexon
TCONS_00048532-exon-scaffold_143-1510915933:85339..85418TCONS_00048532-exon-scaffold_143-1510915933:85339..85418Clytia hemisphaericaexon
TCONS_00048532-exon-scaffold_143-1510915933:84471..85009TCONS_00048532-exon-scaffold_143-1510915933:84471..85009Clytia hemisphaericaexon
TCONS_00048532-exon-scaffold_143-1491911889:87273..87463TCONS_00048532-exon-scaffold_143-1491911889:87273..87463Clytia hemisphaericaexon
TCONS_00048532-exon-scaffold_143-1491911889:86430..86811TCONS_00048532-exon-scaffold_143-1491911889:86430..86811Clytia hemisphaericaexon
TCONS_00048532-exon-scaffold_143-1491911889:85666..86128TCONS_00048532-exon-scaffold_143-1491911889:85666..86128Clytia hemisphaericaexon
TCONS_00048532-exon-scaffold_143-1491911889:85339..85418TCONS_00048532-exon-scaffold_143-1491911889:85339..85418Clytia hemisphaericaexon
TCONS_00048532-exon-scaffold_143-1491911889:84471..85009TCONS_00048532-exon-scaffold_143-1491911889:84471..85009Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_143supercontigscaffold_143:84471..87463 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.107e-06	1.45663e-06	0.302943	0	0.00112764	0.00368036	0.0122579	0.0984842	0	2.04709e-08	0	0	0	1.5969e-07	7.82997e-05	1.77003e-08	9.75006e-07	0.00022675	0.0129748	0	1.67804e-05	0.000233684	0	3.75422	0.0547941	0.00320514	0	0.000885933	6.32527e-10	0.0020596
Blast
[Close]
BLAST of TCONS_00048532 vs. Swiss-Prot (Human)
Match: SRSF1 (Serine/arginine-rich splicing factor 1 OS=Homo sapiens GN=SRSF1 PE=1 SV=2)

HSP 1 Score: 168.318 bits (425), Expect = 1.550e-47
Identity = 96/180 (53.33%), Postives = 120/180 (66.67%), Query Frame = 1 
Query:   37 NSDSRIYVGNLPQFVRQRDLEDHFDRYGKVRGIDIHSR-FDPAFAFIEFEDSRDADDAVYGEDGKRFDGNRIKVQFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHRIIVSGLPKSGSWQDLKDHMREAGEVVYADVYKDGTAVCEFKSSSDMKWALKNLDDTKFKSHE 573
            N+D RIYVGNLP  +R +D+ED F +YG +R ID+ +R   P FAF+EFED RDA+DAVYG DG  +DG R++V+FPR       G G G   G      G    R          +R++VSGLP SGSWQDLKDHMREAG+V YADVY+DGT V EF    DM +A++ LD+TKF+SHE
Sbjct:   13 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSE--------NRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHE 184
The following BLAST results are available for this feature:
BLAST of TCONS_00048532 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SRSF11.550e-4753.33Serine/arginine-rich splicing factor 1 OS=Homo sap... [more]
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