|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048533 ID=TCONS_00048533|Name=TCONS_00048533|organism=Clytia hemisphaerica|type=transcript|length=1191bp
tagcaaaataaaaaatgtcgtCACTTTCAAGAACCACAAATTCAGATTCA
AGAATCTATGTTGGTAATTTACCACAATTTGTGCGTCAAAGAGACTTGGA
GGACCATTTTGATCGATATGGTAAGGTGAGGGGTATTGATATACACAGCA
GATTTGATCCCGCTTTCGCCTTCATTGAATTTGAAGATTCTCGGGATGCT
GATGATGCAGTATATGGAGAAGATGGCAAAAGGTTTGACGGAAACAGAAT
AAAAGTTCAATTTCCAAGAGGAACTCCAAGAGATTCATCTGGCAGAGGAA
GAGGTAGTTCCCGTGGAGGTCGAGGTCCACCTGGAGGAAGCCGTGGAGGT
CGGGGTGGTAGAGGTCCACCCTCTAGAACTGATCATCGTATCATTGTATC
TGGATTACCAAAATCAGGCAGTTGGCAAGATTTAAAAGATCACATGCGAG
AAGCTGGTGAAGTTGTTTATGCTGATGTTTATAAGGATGGCACTGCGGTC
TGTGAATTCAAAAGTTCTAGCGATATGAAATGGGCTCTCAAGAACTTAGA
CGACACAAAATTTAAATCACATGAGaacGAAACTTCATACATTCGCATAA
AACAAGACAAATCACGATCTTCAAAATCTCGAACTAGAAGCAGATCTCCA
AGAAGCCGCTCACCAAGGAGAAGATCTAGATCACGCTCAAGATCAAAGTC
ACCGAAGAAAAGTAGCAGAAGCCCAAGCCGTAGCAAAAGCCGTAGCAAGA
GCAGAAGTAGAAGTCGATCACCACAAAAAAGCAAAAGCAGAAGTCTTAGT
GTAAGCCGTAGCCGTAGCAGGAGTCGCAGTCGCAGCAGAAGTAAAAGCCA
ATGAGAATTGTCTTGTGAGGCACTAACGATTTTAAAACATGCAAATAGCT
GTCTATcatatgtttaaaaaaagcgAAACTTCATATTTCTAGGATTTTTT
TATCaggaaactttttttaaaccaaATTGTAAAGCACTTACATgaacttt
ttttttgcatttacttgtaacaaaaatttactgctttttatttaagtttt
catttttatcattgtaatattttgctttttactgtggtaattttttttat
attatgctACTATAGCTAGTAGTTTTTAAGATTACTTTGTGACTAGATGG
AATTAGACTTTGGCAtatgtataaaaatttgaaatacaaaC Run BLAST on NCBI transcript from alignment at scaffold_143:84471..87465- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048533 ID=TCONS_00048533|Name=TCONS_00048533|organism=Clytia hemisphaerica|type=transcript|length=2995bp|location=Sequence derived from alignment at scaffold_143:84471..87465- (Clytia hemisphaerica)
TAGCAAAATAAAAAATGTCGTCACTTTCAAGAACCACAAATTCAGATTCA
AGAATCTATGTTGGTAATTTACCACAATTTGTGCGTCAAAGAGACTTGGA
GGACCATTTTGATCGATATGGTAAGGTGAGGGGTATTGATATACACAGCA
GATTTGATCCCGCTTTCGCCTTCATTGAATTTGAAGATTCTCGGTAAGTA
TATTGCTCTCTCAAGGCTTACAAGAAATACTTGCATTATTTCATTTACCT
CAATGTGCATTTTTTCCATGAGCTTTCGCTTTGGTTTTTGCAATCTGTTT
TTTAAACTACTTTCATGCAATACATTGGGCTAATTATTACATGGATATAC
TGGGATATAGGCTTACATAGCATCAAGCTGCCTGTCATTAAAGAAGATTA
ATTGTGACATAAAGAAGCTCTATTTGCATAGAAAATCTAGGGGATTAAAT
AATATTGGCTGGGTAGTTCAACTCAATGAGGACACTATACTTTGTTGAAG
ATGTTACCCTTTTCGAAGGAATATAACAACCTTATTGCAAAGCTCAAAAA
CTGATCATCTTTTATTTCAAAATTGAGATGCTCTTTTTCTTAGAAAACAT
TTGGAATTTATCCTTTTTTGCTAAATTTATTTATTCTGAATATTTTTTAT
TCAGGGATGCTGATGATGCAGTATATGGAGAAGATGGCAAAAGGTTTGAC
GGAAACAGAATAAAAGTTCAATTTCCAAGAGGAACTCCAAGAGATTCATC
TGGCAGAGGAAGAGGTAGTTCCCGTGGAGGTCGAGGTCCACCTGGAGGAA
GCCGTGGAGGTCGGGGTGGTAGAGGTCCACCCTCTAGAACTGATCATCGT
ATCATTGTATCTGGATTACCAAAATCAGGCAGTTGGCAAGATTTAAAAGA
TCACATGCGAGAAGCTGGTGAAGTTGTTTATGCTGATGTTTATAAGGATG
GCACTGCGGTCTGTGAATTCAAAAGTTCTAGCGATATGAAATGGGCTCTC
AAGAACTTAGACGACACAAAATTTAAATCACATGAGGTATTTACACATTG
ATTGTATCAGCTCATTTTCTTTTTGGTTCTTACATTAGTTTCCATTCCAT
TCTCATAAAAGAAGTATTTACTACCTAGGCTTTAAATTCCTCCTCATTTA
ATTTACTTACCTTTTATAAACACTTTAGAAAATCCATTATAGTAAATTCA
TGTTTATCAAACCAAACCATGTGAAGATGATGAACAATATAAATTAGGCT
GACATATTCTGTAATAGATGATACAATCAAGCTAGACTATTATTATTTTC
CAAATTAAAACAGAAAACTTTTTTATTTTGTTACTAGCTGGGAACCTCTC
TCAGTTACACAACCACATCCATCTCATTGATGTTGGGATAATAAAACATA
AACCAGACAGGATACAAAGGAGAAAATTTCCACAGGATCATTCCCTAAGA
CCTACAAGGAGCAAGCCAAATAAACAAACCACAACCCAGATGGTCATAAA
AGGAAAACCCCTTGTCCCTCCATGAGCAAATCTGTAAAAGGCACACACCA
TGTGAAAAGCCAGAAAAAAGGAAAACCTTAATGCTAGATGTGAGGTCAAC
TATCAATCCAAGGAAATCCCAGAAGGCAAAAAAGAAAACCCTTAATCAAA
AAGGAGCAAATACTTCCAAAAACCGAAAGGATTTAGCTGTAAATAAGGAA
GACCTATTCCAAAAACATCAGGAGTTGGATACTGTACATAAATAAATAGG
ATTAGTTTAAGATAAATCCACAGGAGGATAAAGCCATATTTCATTTCTTG
GTAAAACTGTTTTATATATTTTTAACATTGATTTTTTAAATTTAGAAAAT
ATGATCTTCTTAAGTCTTAAGATTCTATATTGATTAAACTCAAATTAAAA
TCTTCTTTTTTTTAAAACACATAGTTGCTATACTACCTTTTTTTAAATCA
ATGATTTTGAAATTAAAATTCTGTAGTTAATTTACTATGAAGAATTTGTA
GCCTTTAGGAACTTTTAGCAATTTAACGTTGTTTATTTCATTTTCAGAAC
GAAACTTCATACATTCGCATAAAACAAGACAAATCACGATCTTCAAAATC
TCGAACTAGAAGCAGATCTCCAAGAAGGTAAAAATAATTTAGTAATATAG
TGTTTTCAAAGTTTTCAAAGTTGTTTTCTTCTCATAGACAGCCAAAAAAG
GCAAATTCATTTATCGAAAGTCTCACGCTCAGTCAGCTAATAATAAAATG
TCTACATCATTGAAGCTTACAATATAAATTTGAAAATATTCCTTTTTCTA
TAAATAGGTTGGGAAATAATTAGTTTATCTAGCAAGGTCAGTGAAAACTT
GTTGGTGTTGACACAATGTCGGTGTTAAAGTATTAATTAAAAAAGTAAGT
AACTTTAAAAAGTTAATCTCTTTTGAAAATGTAATAAAGATGATTATTCT
TTTTAGAAGCCGCTCACCAAGGAGAAGATCTAGATCACGCTCAAGATCAA
AGTCACCGAAGAAAAGTAGCAGAAGCCCAAGCCGTAGCAAAAGCCGTAGC
AAGAGCAGAAGTAGAAGTCGATCACCACAAAAAAGCAAAAGCAGAAGTCT
TAGTGTAAGCCGTAGCCGTAGCAGGAGTCGCAGTCGCAGCAGAAGTAAAA
GCCAATGAGAATTGTCTTGTGAGGCACTAACGATTTTAAAACATGCAAAT
AGCTGTCTATCATATGTTTAAAAAAAGCGAAACTTCATATTTCTAGGATT
TTTTTATCAGGAAACTTTTTTTAAACCAAATTGTAAAGCACTTACATGAA
CTTTTTTTTTGCATTTACTTGTAACAAAAATTTACTGCTTTTTATTTAAG
TTTTCATTTTTATCATTGTAATATTTTGCTTTTTACTGTGGTAATTTTTT
TTATATTATGCTACTATAGCTAGTAGTTTTTAAGATTACTTTGTGACTAG
ATGGAATTAGACTTTGGCATATGTATAAAAATTTGAAATACAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048533-exon-scaffold_143-1575043694:87273..87465 | TCONS_00048533-exon-scaffold_143-1575043694:87273..87465 | Clytia hemisphaerica | exon |
| TCONS_00048533-exon-scaffold_143-1575043694:86430..86811 | TCONS_00048533-exon-scaffold_143-1575043694:86430..86811 | Clytia hemisphaerica | exon |
| TCONS_00048533-exon-scaffold_143-1575043694:85339..85418 | TCONS_00048533-exon-scaffold_143-1575043694:85339..85418 | Clytia hemisphaerica | exon |
| TCONS_00048533-exon-scaffold_143-1575043694:84471..85006 | TCONS_00048533-exon-scaffold_143-1575043694:84471..85006 | Clytia hemisphaerica | exon |
| TCONS_00048533-exon-scaffold_143-1510915933:87273..87465 | TCONS_00048533-exon-scaffold_143-1510915933:87273..87465 | Clytia hemisphaerica | exon |
| TCONS_00048533-exon-scaffold_143-1510915933:86430..86811 | TCONS_00048533-exon-scaffold_143-1510915933:86430..86811 | Clytia hemisphaerica | exon |
| TCONS_00048533-exon-scaffold_143-1510915933:85339..85418 | TCONS_00048533-exon-scaffold_143-1510915933:85339..85418 | Clytia hemisphaerica | exon |
| TCONS_00048533-exon-scaffold_143-1510915933:84471..85006 | TCONS_00048533-exon-scaffold_143-1510915933:84471..85006 | Clytia hemisphaerica | exon |
| TCONS_00048533-exon-scaffold_143-1491911889:87273..87465 | TCONS_00048533-exon-scaffold_143-1491911889:87273..87465 | Clytia hemisphaerica | exon |
| TCONS_00048533-exon-scaffold_143-1491911889:86430..86811 | TCONS_00048533-exon-scaffold_143-1491911889:86430..86811 | Clytia hemisphaerica | exon |
| TCONS_00048533-exon-scaffold_143-1491911889:85339..85418 | TCONS_00048533-exon-scaffold_143-1491911889:85339..85418 | Clytia hemisphaerica | exon |
| TCONS_00048533-exon-scaffold_143-1491911889:84471..85006 | TCONS_00048533-exon-scaffold_143-1491911889:84471..85006 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_143 | supercontig | scaffold_143:84471..87465 - |
Blast
BLAST of TCONS_00048533 vs. Swiss-Prot (Human)
Match: SRSF1 (Serine/arginine-rich splicing factor 1 OS=Homo sapiens GN=SRSF1 PE=1 SV=2) HSP 1 Score: 183.726 bits (465), Expect = 1.556e-54 Identity = 103/191 (53.93%), Postives = 129/191 (67.54%), Query Frame = 3
Query: 39 NSDSRIYVGNLPQFVRQRDLEDHFDRYGKVRGIDIHSR-FDPAFAFIEFEDSRDADDAVYGEDGKRFDGNRIKVQFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHRIIVSGLPKSGSWQDLKDHMREAGEVVYADVYKDGTAVCEFKSSSDMKWALKNLDDTKFKSHENETSYIRIKQD 608
N+D RIYVGNLP +R +D+ED F +YG +R ID+ +R P FAF+EFED RDA+DAVYG DG +DG R++V+FPR G G G G G R +R++VSGLP SGSWQDLKDHMREAG+V YADVY+DGT V EF DM +A++ LD+TKF+SHE ET+YIR+K D
Sbjct: 13 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSE--------NRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD 195
The following BLAST results are available for this feature:
|
